Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_A05_e33_01.seq
         (1560 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    23   9.4  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    23   9.4  
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    23   9.4  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    23   9.4  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    23   9.4  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    23   9.4  

>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 9.4
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +2

Query: 71  RHEXXRRTSIKPFSKEPNNVTNLNSYRYN 157
           R E  R    K  S   NN  + N+Y+YN
Sbjct: 69  RTERERSREPKIISSLSNNTIHNNNYKYN 97


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 9.4
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +2

Query: 71  RHEXXRRTSIKPFSKEPNNVTNLNSYRYN 157
           R E  R    K  S   NN  + N+Y+YN
Sbjct: 69  RAERERSREPKIISSLSNNTIHNNNYKYN 97


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 9.4
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +2

Query: 71  RHEXXRRTSIKPFSKEPNNVTNLNSYRYN 157
           R E  R    K  S   NN  + N+Y+YN
Sbjct: 70  RTERERSREPKIISSLSNNTIHNNNYKYN 98


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 9.4
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +2

Query: 71  RHEXXRRTSIKPFSKEPNNVTNLNSYRYN 157
           R E  R    K  S   NN  + N+Y+YN
Sbjct: 70  RTERERSREPKIISSLSNNTIHNNNYKYN 98


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 9.4
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +2

Query: 71  RHEXXRRTSIKPFSKEPNNVTNLNSYRYN 157
           R E  R    K  S   NN  + N+Y+YN
Sbjct: 70  RTERERSREPKIISSLSNNTIHNNNYKYN 98


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 9.4
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +2

Query: 71  RHEXXRRTSIKPFSKEPNNVTNLNSYRYN 157
           R E  R    K  S   NN  + N+Y+YN
Sbjct: 70  RTERERSREPKIISSLSNNTIHNNNYKYN 98


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 305,135
Number of Sequences: 438
Number of extensions: 6042
Number of successful extensions: 20
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 54788250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)