Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_A05_e33_01.seq
         (1560 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g29410.1 68417.m04200 60S ribosomal protein L28 (RPL28C) unkn...    64   2e-10
At2g19730.1 68415.m02305 60S ribosomal protein L28 (RPL28A)            63   4e-10

>At4g29410.1 68417.m04200 60S ribosomal protein L28 (RPL28C) unknown
           protein chromosome II BAC F6F22 - Arabidopsis
           thaliana,PID:g3687251
          Length = 143

 Score = 64.5 bits (150), Expect = 2e-10
 Identities = 40/102 (39%), Positives = 59/102 (57%), Gaps = 4/102 (3%)
 Frame = +2

Query: 107 FSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDRKGFTIVYKKAKATNKPV----KNIIRR 274
           FSKE NN+ N+NSY+++GL +KK V +      +G  +   K K  NKP     K+I+++
Sbjct: 33  FSKESNNLVNINSYKHSGLANKKTVTIQAAGKDQGVVLGTTKTKRQNKPKLSVNKSILKK 92

Query: 275 PFKAGARRSLFKAKRLLKANHYRTDLTKATLRRASAILRSQR 400
            F   +R S   A +++  N+YR DL KA L R SAI +  R
Sbjct: 93  EF---SRMSKVVANQVVD-NYYRPDLKKAALARLSAISKGLR 130


>At2g19730.1 68415.m02305 60S ribosomal protein L28 (RPL28A)
          Length = 143

 Score = 63.3 bits (147), Expect = 4e-10
 Identities = 37/105 (35%), Positives = 53/105 (50%)
 Frame = +2

Query: 86  RRTSIKPFSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDRKGFTIVYKKAKATNKPVKNI 265
           R  S   FSKE NN+TN++SY+++GL +KK V +      +   +   K K  NKP  ++
Sbjct: 26  RGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQAADKDQAVVLATTKTKKQNKPKLSV 85

Query: 266 IRRPFKAGARRSLFKAKRLLKANHYRTDLTKATLRRASAILRSQR 400
            +   K    R        +  N+YR DL KA L R SAI +  R
Sbjct: 86  NKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALARLSAISKGLR 130


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,277,682
Number of Sequences: 28952
Number of extensions: 412136
Number of successful extensions: 710
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4192787520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)