Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030623sawa_A04_e25_02.seq
(1469 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47198| Best HMM Match : Tubulin (HMM E-Value=0) 168 8e-42
SB_39308| Best HMM Match : Tubulin (HMM E-Value=0) 168 8e-42
SB_17879| Best HMM Match : Tubulin (HMM E-Value=0) 168 8e-42
SB_17651| Best HMM Match : Tubulin_C (HMM E-Value=4.7e-28) 147 2e-35
SB_44780| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-34) 146 3e-35
SB_25311| Best HMM Match : Tubulin (HMM E-Value=0) 93 4e-27
SB_17880| Best HMM Match : Tubulin_C (HMM E-Value=0) 110 3e-24
SB_22191| Best HMM Match : No HMM Matches (HMM E-Value=.) 70 5e-12
SB_42897| Best HMM Match : No HMM Matches (HMM E-Value=.) 69 7e-12
SB_47795| Best HMM Match : Tubulin_C (HMM E-Value=0.24) 69 9e-12
SB_2674| Best HMM Match : Tubulin (HMM E-Value=0) 68 2e-11
SB_22193| Best HMM Match : No HMM Matches (HMM E-Value=.) 67 4e-11
SB_22192| Best HMM Match : No HMM Matches (HMM E-Value=.) 67 4e-11
SB_2003| Best HMM Match : Tubulin (HMM E-Value=0) 67 4e-11
SB_37573| Best HMM Match : No HMM Matches (HMM E-Value=.) 66 5e-11
SB_19437| Best HMM Match : Tubulin (HMM E-Value=0) 66 5e-11
SB_51156| Best HMM Match : Tubulin_C (HMM E-Value=0) 66 5e-11
SB_23895| Best HMM Match : Tubulin_C (HMM E-Value=0) 66 5e-11
SB_22190| Best HMM Match : No HMM Matches (HMM E-Value=.) 65 2e-10
SB_51150| Best HMM Match : Tubulin_C (HMM E-Value=0) 64 2e-10
SB_48961| Best HMM Match : Tubulin (HMM E-Value=0) 64 2e-10
SB_5512| Best HMM Match : Tubulin (HMM E-Value=0) 56 7e-08
SB_57880| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 4e-06
SB_40336| Best HMM Match : Tubulin_C (HMM E-Value=1.3e-32) 45 2e-04
SB_37070| Best HMM Match : Vicilin_N (HMM E-Value=4.8) 33 0.58
SB_48462| Best HMM Match : zf-C2H2 (HMM E-Value=1.1e-18) 32 1.3
SB_47086| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 1.3
SB_45838| Best HMM Match : Sigma70_r1_1 (HMM E-Value=2.6) 31 1.8
SB_56573| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 5.4
SB_46547| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 5.4
SB_6714| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.1
>SB_47198| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 446
Score = 168 bits (409), Expect = 8e-42
Identities = 76/88 (86%), Positives = 85/88 (96%)
Frame = +2
Query: 80 DIPPKGLKMSSTFIGNTTAIQELFKRISEQFSAMFRRKAFLHWYTGEGMDEMEFNEAESN 259
DIPP+GLKMS+TFIGN+TAIQELFKRISEQF+AMFRRKAFLHWYTGEGMDEMEF EAESN
Sbjct: 355 DIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESN 414
Query: 260 VNDLVSEYQQYQDATAEDDTEFDQEDME 343
+NDLVSEYQQYQDATAE++ EFD+E+ E
Sbjct: 415 MNDLVSEYQQYQDATAEEEGEFDEEEEE 442
>SB_39308| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 391
Score = 168 bits (409), Expect = 8e-42
Identities = 76/88 (86%), Positives = 85/88 (96%)
Frame = +2
Query: 80 DIPPKGLKMSSTFIGNTTAIQELFKRISEQFSAMFRRKAFLHWYTGEGMDEMEFNEAESN 259
DIPP+GLKMS+TFIGN+TAIQELFKRISEQF+AMFRRKAFLHWYTGEGMDEMEF EAESN
Sbjct: 300 DIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESN 359
Query: 260 VNDLVSEYQQYQDATAEDDTEFDQEDME 343
+NDLVSEYQQYQDATAE++ EFD+E+ E
Sbjct: 360 MNDLVSEYQQYQDATAEEEGEFDEEEEE 387
>SB_17879| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 446
Score = 168 bits (409), Expect = 8e-42
Identities = 76/88 (86%), Positives = 85/88 (96%)
Frame = +2
Query: 80 DIPPKGLKMSSTFIGNTTAIQELFKRISEQFSAMFRRKAFLHWYTGEGMDEMEFNEAESN 259
DIPP+GLKMS+TFIGN+TAIQELFKRISEQF+AMFRRKAFLHWYTGEGMDEMEF EAESN
Sbjct: 355 DIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESN 414
Query: 260 VNDLVSEYQQYQDATAEDDTEFDQEDME 343
+NDLVSEYQQYQDATAE++ EFD+E+ E
Sbjct: 415 MNDLVSEYQQYQDATAEEEGEFDEEEEE 442
>SB_17651| Best HMM Match : Tubulin_C (HMM E-Value=4.7e-28)
Length = 271
Score = 147 bits (356), Expect = 2e-35
Identities = 64/90 (71%), Positives = 79/90 (87%)
Frame = +2
Query: 80 DIPPKGLKMSSTFIGNTTAIQELFKRISEQFSAMFRRKAFLHWYTGEGMDEMEFNEAESN 259
DI PKGLKM++TF+GN TAIQELFKR+ EQF+AMFRRKAFLHWYTGEGMDEMEF EAESN
Sbjct: 182 DIAPKGLKMAATFVGNNTAIQELFKRVGEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESN 241
Query: 260 VNDLVSEYQQYQDATAEDDTEFDQEDMEEL 349
++DL++EYQQYQ+A A+ + E E++ E+
Sbjct: 242 MHDLIAEYQQYQEAEADIEGEVSDEELPEV 271
>SB_44780| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-34)
Length = 747
Score = 146 bits (355), Expect = 3e-35
Identities = 64/89 (71%), Positives = 78/89 (87%)
Frame = +2
Query: 80 DIPPKGLKMSSTFIGNTTAIQELFKRISEQFSAMFRRKAFLHWYTGEGMDEMEFNEAESN 259
DI PKGLKM++TF+GN TAIQELFKR+ EQF+AMFRRKAFLHWYTGEGMDEMEF EAESN
Sbjct: 120 DIAPKGLKMAATFVGNNTAIQELFKRVGEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESN 179
Query: 260 VNDLVSEYQQYQDATAEDDTEFDQEDMEE 346
++DL++EYQQYQ+A A+ + E E++ E
Sbjct: 180 MHDLIAEYQQYQEAEADIEGEVSDEELPE 208
>SB_25311| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 629
Score = 92.7 bits (220), Expect(2) = 4e-27
Identities = 39/60 (65%), Positives = 50/60 (83%)
Frame = +2
Query: 80 DIPPKGLKMSSTFIGNTTAIQELFKRISEQFSAMFRRKAFLHWYTGEGMDEMEFNEAESN 259
D+PP GLK ++TF+ N+TAIQE F+R +EQF+AMFRR+AFLHWYT EGMD +EF E + N
Sbjct: 174 DVPPVGLKNAATFLYNSTAIQEAFRRFTEQFAAMFRRRAFLHWYTTEGMDPLEFTEIKRN 233
Score = 48.4 bits (110), Expect(2) = 4e-27
Identities = 21/38 (55%), Positives = 30/38 (78%), Gaps = 2/38 (5%)
Frame = +2
Query: 248 AESNVNDLVSEYQQYQDATAEDD--TEFDQEDMEELAQ 355
A+SN+NDL+SEYQQY+DA ++DD T D+E+ EE +
Sbjct: 259 ADSNLNDLISEYQQYEDAKSDDDVITASDEEEAEEFVE 296
>SB_17880| Best HMM Match : Tubulin_C (HMM E-Value=0)
Length = 375
Score = 110 bits (264), Expect = 3e-24
Identities = 51/97 (52%), Positives = 69/97 (71%)
Frame = +2
Query: 80 DIPPKGLKMSSTFIGNTTAIQELFKRISEQFSAMFRRKAFLHWYTGEGMDEMEFNEAESN 259
D+PP +KMS++ I + TAIQELFKRI + MFRR+AFLHWYT EGMD +F EA+++
Sbjct: 260 DVPPHDMKMSASCISSNTAIQELFKRIRLHYKLMFRRRAFLHWYTEEGMDSQQFEEADND 319
Query: 260 VNDLVSEYQQYQDATAEDDTEFDQEDMEELAQDEHHD 370
+ DL+S YQQ +D AED FD ED++ + +E D
Sbjct: 320 ILDLISTYQQCEDMKAEDC--FDDEDIKLIEFEEFED 354
>SB_22191| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 865
Score = 69.7 bits (163), Expect = 5e-12
Identities = 28/71 (39%), Positives = 47/71 (66%)
Frame = +2
Query: 119 IGNTTAIQELFKRISEQFSAMFRRKAFLHWYTGEGMDEMEFNEAESNVNDLVSEYQQYQD 298
+ NTTAI E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 794 LSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVAV 853
Query: 299 ATAEDDTEFDQ 331
+ E+D E ++
Sbjct: 854 ESVEEDEEEEE 864
Score = 64.5 bits (150), Expect = 2e-10
Identities = 25/57 (43%), Positives = 40/57 (70%)
Frame = +2
Query: 119 IGNTTAIQELFKRISEQFSAMFRRKAFLHWYTGEGMDEMEFNEAESNVNDLVSEYQQ 289
+ NTTAI E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 363 LSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 419
>SB_42897| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 602
Score = 69.3 bits (162), Expect = 7e-12
Identities = 29/73 (39%), Positives = 49/73 (67%)
Frame = +2
Query: 119 IGNTTAIQELFKRISEQFSAMFRRKAFLHWYTGEGMDEMEFNEAESNVNDLVSEYQQYQD 298
+ NTTAI E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 530 LSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV-G 588
Query: 299 ATAEDDTEFDQED 337
A + DD+ D+++
Sbjct: 589 ADSPDDSVVDEDE 601
>SB_47795| Best HMM Match : Tubulin_C (HMM E-Value=0.24)
Length = 149
Score = 68.9 bits (161), Expect = 9e-12
Identities = 28/80 (35%), Positives = 52/80 (65%)
Frame = +2
Query: 98 LKMSSTFIGNTTAIQELFKRISEQFSAMFRRKAFLHWYTGEGMDEMEFNEAESNVNDLVS 277
++ S + NTTAI + + R++ +F M+ ++AF+HWY GEGM+E EF+EA ++ L
Sbjct: 69 VQRSVCMLSNTTAIADAWARLNHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 128
Query: 278 EYQQYQDATAEDDTEFDQED 337
+Y++ + ++D E + E+
Sbjct: 129 DYEEVGVDSVDNDGETEAEE 148
>SB_2674| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 1036
Score = 68.1 bits (159), Expect = 2e-11
Identities = 28/73 (38%), Positives = 48/73 (65%)
Frame = +2
Query: 119 IGNTTAIQELFKRISEQFSAMFRRKAFLHWYTGEGMDEMEFNEAESNVNDLVSEYQQYQD 298
+ NTTAI E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 963 LSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGV 1022
Query: 299 ATAEDDTEFDQED 337
+ E++ E + E+
Sbjct: 1023 DSVEEEGEEEGEE 1035
>SB_22193| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1231
Score = 66.9 bits (156), Expect = 4e-11
Identities = 28/73 (38%), Positives = 47/73 (64%)
Frame = +2
Query: 119 IGNTTAIQELFKRISEQFSAMFRRKAFLHWYTGEGMDEMEFNEAESNVNDLVSEYQQYQD 298
+ NTTAI E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 1158 LSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGV 1217
Query: 299 ATAEDDTEFDQED 337
+ E + E + E+
Sbjct: 1218 DSVEGEGEEEGEE 1230
Score = 64.5 bits (150), Expect = 2e-10
Identities = 25/57 (43%), Positives = 40/57 (70%)
Frame = +2
Query: 119 IGNTTAIQELFKRISEQFSAMFRRKAFLHWYTGEGMDEMEFNEAESNVNDLVSEYQQ 289
+ NTTAI E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 749 LSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 805
>SB_22192| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 452
Score = 66.9 bits (156), Expect = 4e-11
Identities = 29/74 (39%), Positives = 48/74 (64%), Gaps = 1/74 (1%)
Frame = +2
Query: 119 IGNTTAIQELFKRISEQFSAMFRRKAFLHWYTGEGMDEMEFNEAESNVNDLVSEYQQY-Q 295
+ NTTAI E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 378 LSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGV 437
Query: 296 DATAEDDTEFDQED 337
D+ E + E + E+
Sbjct: 438 DSVEEGEEEEEGEE 451
>SB_2003| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 451
Score = 66.9 bits (156), Expect = 4e-11
Identities = 28/73 (38%), Positives = 47/73 (64%)
Frame = +2
Query: 119 IGNTTAIQELFKRISEQFSAMFRRKAFLHWYTGEGMDEMEFNEAESNVNDLVSEYQQYQD 298
+ NTTAI E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 378 LSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGV 437
Query: 299 ATAEDDTEFDQED 337
+ E + E + E+
Sbjct: 438 DSVEGEGEEEGEE 450
>SB_37573| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 66.5 bits (155), Expect = 5e-11
Identities = 30/76 (39%), Positives = 49/76 (64%)
Frame = +2
Query: 119 IGNTTAIQELFKRISEQFSAMFRRKAFLHWYTGEGMDEMEFNEAESNVNDLVSEYQQYQD 298
+ NTTAI E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 315 LSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGV 374
Query: 299 ATAEDDTEFDQEDMEE 346
+ E + E +E+ EE
Sbjct: 375 DSVEGEGE--EEEGEE 388
>SB_19437| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 885
Score = 66.5 bits (155), Expect = 5e-11
Identities = 30/76 (39%), Positives = 49/76 (64%)
Frame = +2
Query: 119 IGNTTAIQELFKRISEQFSAMFRRKAFLHWYTGEGMDEMEFNEAESNVNDLVSEYQQYQD 298
+ NTTAI E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 811 LSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGV 870
Query: 299 ATAEDDTEFDQEDMEE 346
+ E + E +E+ EE
Sbjct: 871 DSVEGEGE--EEEGEE 884
Score = 64.1 bits (149), Expect = 3e-10
Identities = 24/57 (42%), Positives = 40/57 (70%)
Frame = +2
Query: 119 IGNTTAIQELFKRISEQFSAMFRRKAFLHWYTGEGMDEMEFNEAESNVNDLVSEYQQ 289
+ NTTA+ E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 378 LSNTTAVAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434
>SB_51156| Best HMM Match : Tubulin_C (HMM E-Value=0)
Length = 377
Score = 66.5 bits (155), Expect = 5e-11
Identities = 30/76 (39%), Positives = 49/76 (64%)
Frame = +2
Query: 119 IGNTTAIQELFKRISEQFSAMFRRKAFLHWYTGEGMDEMEFNEAESNVNDLVSEYQQYQD 298
+ NTTAI E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 303 LSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGV 362
Query: 299 ATAEDDTEFDQEDMEE 346
+ E + E +E+ EE
Sbjct: 363 DSVEGEGE--EEEGEE 376
>SB_23895| Best HMM Match : Tubulin_C (HMM E-Value=0)
Length = 250
Score = 66.5 bits (155), Expect = 5e-11
Identities = 30/76 (39%), Positives = 49/76 (64%)
Frame = +2
Query: 119 IGNTTAIQELFKRISEQFSAMFRRKAFLHWYTGEGMDEMEFNEAESNVNDLVSEYQQYQD 298
+ NTTAI E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 176 LSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGV 235
Query: 299 ATAEDDTEFDQEDMEE 346
+ E + E +E+ EE
Sbjct: 236 DSVEGEGE--EEEGEE 249
>SB_22190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 417
Score = 64.9 bits (151), Expect = 2e-10
Identities = 28/74 (37%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Frame = +2
Query: 119 IGNTTAIQELFKRISEQFSAMFRRKAFLHWYTGEGMDEMEFNEAESNVNDLVSEYQQY-Q 295
+ NTTAI E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 343 LSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGV 402
Query: 296 DATAEDDTEFDQED 337
D+ + + E E+
Sbjct: 403 DSVGDGEDEDGGEE 416
>SB_51150| Best HMM Match : Tubulin_C (HMM E-Value=0)
Length = 232
Score = 64.5 bits (150), Expect = 2e-10
Identities = 25/64 (39%), Positives = 44/64 (68%)
Frame = +2
Query: 98 LKMSSTFIGNTTAIQELFKRISEQFSAMFRRKAFLHWYTGEGMDEMEFNEAESNVNDLVS 277
++ S + NTTAI + + R++ +F M+ ++AF+HWY GEGM+E EF+EA ++ L
Sbjct: 169 VQRSVCMLSNTTAIADAWARLNHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 228
Query: 278 EYQQ 289
+Y++
Sbjct: 229 DYEE 232
>SB_48961| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 536
Score = 64.5 bits (150), Expect = 2e-10
Identities = 25/57 (43%), Positives = 40/57 (70%)
Frame = +2
Query: 119 IGNTTAIQELFKRISEQFSAMFRRKAFLHWYTGEGMDEMEFNEAESNVNDLVSEYQQ 289
+ NTTAI E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 362 LSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 418
>SB_5512| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 365
Score = 56.0 bits (129), Expect = 7e-08
Identities = 24/68 (35%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Frame = +2
Query: 137 IQELFKRISEQFSAMFRRKAFLHWYTGEGMDEMEFNEAESNVNDLVSEYQQY-QDATAED 313
I E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++ D+ +
Sbjct: 297 IAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSVGDG 356
Query: 314 DTEFDQED 337
+ E E+
Sbjct: 357 EDEDGGEE 364
>SB_57880| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 65
Score = 50.4 bits (115), Expect = 4e-06
Identities = 20/52 (38%), Positives = 34/52 (65%)
Frame = +2
Query: 182 FRRKAFLHWYTGEGMDEMEFNEAESNVNDLVSEYQQYQDATAEDDTEFDQED 337
+ ++AF+HWY GEGM+E EF+EA ++ L +Y++ + E + E D E+
Sbjct: 13 YAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSVEGEGEEDDEE 64
>SB_40336| Best HMM Match : Tubulin_C (HMM E-Value=1.3e-32)
Length = 488
Score = 44.8 bits (101), Expect = 2e-04
Identities = 19/68 (27%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Frame = +2
Query: 83 IPPKGLKMSSTFIGNTTAIQELFKRISEQFSAMFRRKAFLHWYTG-EGMDEMEFNEAESN 259
+PP G S + N + I+ F + ++F +++RKA +H YT +G++ +F++ +
Sbjct: 403 VPPVGQPYSLLTLANNSCIKNTFVELKDRFMKLYKRKAHVHHYTHVDGLEVGQFDDGLES 462
Query: 260 VNDLVSEY 283
++ L+ EY
Sbjct: 463 LSWLIQEY 470
>SB_37070| Best HMM Match : Vicilin_N (HMM E-Value=4.8)
Length = 319
Score = 33.1 bits (72), Expect = 0.58
Identities = 16/65 (24%), Positives = 35/65 (53%)
Frame = +2
Query: 224 MDEMEFNEAESNVNDLVSEYQQYQDATAEDDTEFDQEDMEELAQDEHHD*IGSIPPIYEI 403
+ ++ F++ ++ + YQ+ Q+ E++ E +E+MEE +QD+ + P E
Sbjct: 167 LSQLMFSKYDAEKTQWIYNYQREQEREMEEEEEDSEEEMEEDSQDKPGNPFKGTPTEEEK 226
Query: 404 LLLKN 418
+L+N
Sbjct: 227 EMLRN 231
>SB_48462| Best HMM Match : zf-C2H2 (HMM E-Value=1.1e-18)
Length = 536
Score = 31.9 bits (69), Expect = 1.3
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +2
Query: 218 EGMDEMEFNEAESNVNDLVSEYQQYQDATAEDDTEFDQED 337
E + + E E++ N ++ E Q +QD +EDD+E + E+
Sbjct: 15 EDLSDEESIESDGNCSNFSDELQNFQDDDSEDDSENEDEE 54
>SB_47086| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 453
Score = 31.9 bits (69), Expect = 1.3
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Frame = +3
Query: 186 DARLSCTGTPARAWTRWNSTRRRAMSMIWFRNTSSTRTRPLKMTRNLT-----RKIWRSS 350
D L T AR TR N+TR+ S + RN+S T P+++T T + R+
Sbjct: 249 DCHLFNLSTTARPITRSNTTRQEHNSGVDCRNSSCT---PIEVTETSTLEKSANTLSRAG 305
Query: 351 LKTSTMIKSVLYLPSMKSCYLR 416
++ ++ + ++L M C+LR
Sbjct: 306 FLSAAILTAAVFLIVMCCCFLR 327
>SB_45838| Best HMM Match : Sigma70_r1_1 (HMM E-Value=2.6)
Length = 166
Score = 31.5 bits (68), Expect = 1.8
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Frame = +2
Query: 116 FIGNTTAIQELFKRISEQFSAMFRRKAFLHWYTGEGMDEMEFNEAESNVND---LVSEYQ 286
F+G + ++ I + + RR L E + ++ +ND LV+E
Sbjct: 73 FVGFGKLYEAQYRMIKNRITHAIRRVGPLTLEKLEETFKADWELIRLLLNDMIKLVNEDS 132
Query: 287 QYQDAT-AEDDTEFDQEDMEELAQDEHH 367
+ Q A AE +TE ++E+ +++A DEHH
Sbjct: 133 EKQAARDAESETENEEENYQDIAFDEHH 160
>SB_56573| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 641
Score = 29.9 bits (64), Expect = 5.4
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +2
Query: 65 IRHEGDIPPKGLKMSSTFIGNTTAIQELFKRISEQFSAMF 184
IRH+ + PP ++ +S T L K +SE FS++F
Sbjct: 436 IRHDSEAPPIPVRKTSEIPQTKTHGPSLVKELSESFSSVF 475
>SB_46547| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1058
Score = 29.9 bits (64), Expect = 5.4
Identities = 17/43 (39%), Positives = 25/43 (58%)
Frame = -2
Query: 493 TKRIYKRRHPAMRGMKHNYEILIYHILK*QDFIDGRYRTDLIM 365
TK R +RG+K N E I ++L+ +DF+DG TD I+
Sbjct: 383 TKLHRSLREFRVRGVKTNTEF-IRNVLQHKDFLDGHVTTDFIL 424
>SB_6714| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 233
Score = 29.5 bits (63), Expect = 7.1
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +2
Query: 218 EGMDEMEFNEAESNVNDLVSEYQQYQDATAEDDTEFDQEDMEELAQDE 361
E +EM E + + + + ++ E D E D+ED EE+ Q+E
Sbjct: 127 EDKEEMGKGEMDKEDKEEMDQEMDKEEMDQEMDKEMDKEDKEEMDQEE 174
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,410,113
Number of Sequences: 59808
Number of extensions: 505501
Number of successful extensions: 1708
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 1545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1699
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4742061908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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