Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030623sawa_A04_e25_02.seq
(1469 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 161 8e-40
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 161 8e-40
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 161 1e-39
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 160 2e-39
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 159 4e-39
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 158 7e-39
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 158 7e-39
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 152 5e-37
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 149 3e-36
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 75 2e-13
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 72 1e-12
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 72 1e-12
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 69 1e-11
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 69 1e-11
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 69 1e-11
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 38 0.017
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 36 0.051
At5g56950.1 68418.m07109 nucleosome assembly protein (NAP), puta... 35 0.16
At4g26110.1 68417.m03759 nucleosome assembly protein (NAP), puta... 33 0.36
At3g24080.1 68416.m03024 KRR1 family protein contains Pfam PF051... 31 1.9
At4g05420.1 68417.m00824 UV-damaged DNA-binding protein, putativ... 30 3.3
At3g50690.1 68416.m05546 leucine-rich repeat family protein 30 3.3
At2g34030.1 68415.m04166 calcium-binding EF hand family protein ... 30 3.3
At4g08810.1 68417.m01450 expressed protein 30 4.4
At3g47490.2 68416.m05164 HNH endonuclease domain-containing prot... 30 4.4
At3g47490.1 68416.m05165 HNH endonuclease domain-containing prot... 30 4.4
At2g19480.1 68415.m02277 nucleosome assembly protein (NAP), puta... 30 4.4
At5g36930.1 68418.m04427 disease resistance protein (TIR-NBS-LRR... 29 5.8
At1g73080.1 68414.m08450 leucine-rich repeat transmembrane prote... 29 5.8
At5g44280.1 68418.m05420 zinc finger (C3HC4-type RING finger) fa... 29 7.7
At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase cyc... 29 7.7
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 161 bits (392), Expect = 8e-40
Identities = 70/96 (72%), Positives = 87/96 (90%)
Frame = +2
Query: 80 DIPPKGLKMSSTFIGNTTAIQELFKRISEQFSAMFRRKAFLHWYTGEGMDEMEFNEAESN 259
DIPP GLKM+STFIGN+T+IQE+F+R+SEQF+AMFRRKAFLHWYTGEGMDEMEF EAESN
Sbjct: 355 DIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESN 414
Query: 260 VNDLVSEYQQYQDATAEDDTEFDQEDMEELAQDEHH 367
+NDLVSEYQQYQDATA+++ +++ E+ E Q+E +
Sbjct: 415 MNDLVSEYQQYQDATADEEGDYEDEEEGEYQQEEEY 450
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 161 bits (392), Expect = 8e-40
Identities = 70/96 (72%), Positives = 87/96 (90%)
Frame = +2
Query: 80 DIPPKGLKMSSTFIGNTTAIQELFKRISEQFSAMFRRKAFLHWYTGEGMDEMEFNEAESN 259
DIPP GLKM+STFIGN+T+IQE+F+R+SEQF+AMFRRKAFLHWYTGEGMDEMEF EAESN
Sbjct: 355 DIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESN 414
Query: 260 VNDLVSEYQQYQDATAEDDTEFDQEDMEELAQDEHH 367
+NDLVSEYQQYQDATA+++ +++ E+ E Q+E +
Sbjct: 415 MNDLVSEYQQYQDATADEEGDYEDEEEGEYQQEEEY 450
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 161 bits (391), Expect = 1e-39
Identities = 69/89 (77%), Positives = 85/89 (95%)
Frame = +2
Query: 80 DIPPKGLKMSSTFIGNTTAIQELFKRISEQFSAMFRRKAFLHWYTGEGMDEMEFNEAESN 259
DIPPKGLKM++TF+GN+T+IQE+F+R+SEQF+AMFRRKAFLHWYTGEGMDEMEF EAESN
Sbjct: 356 DIPPKGLKMAATFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESN 415
Query: 260 VNDLVSEYQQYQDATAEDDTEFDQEDMEE 346
+NDLV+EYQQYQDATA+++ E+D E+ EE
Sbjct: 416 MNDLVAEYQQYQDATADEEGEYDVEEEEE 444
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 160 bits (388), Expect = 2e-39
Identities = 69/88 (78%), Positives = 84/88 (95%)
Frame = +2
Query: 80 DIPPKGLKMSSTFIGNTTAIQELFKRISEQFSAMFRRKAFLHWYTGEGMDEMEFNEAESN 259
DIPP GLKM+STFIGN+T+IQE+F+R+SEQF+AMFRRKAFLHWYTGEGMDEMEF EAESN
Sbjct: 355 DIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESN 414
Query: 260 VNDLVSEYQQYQDATAEDDTEFDQEDME 343
+NDLVSEYQQYQDATA+++ E+++E+ E
Sbjct: 415 MNDLVSEYQQYQDATADEEGEYEEEEAE 442
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 159 bits (386), Expect = 4e-39
Identities = 67/86 (77%), Positives = 83/86 (96%)
Frame = +2
Query: 80 DIPPKGLKMSSTFIGNTTAIQELFKRISEQFSAMFRRKAFLHWYTGEGMDEMEFNEAESN 259
DIPP G+KM+STF+GN+T+IQE+F+R+SEQF+AMFRRKAFLHWYTGEGMDEMEF EAESN
Sbjct: 356 DIPPTGIKMASTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESN 415
Query: 260 VNDLVSEYQQYQDATAEDDTEFDQED 337
+NDLVSEYQQYQDATA+++ E+D+E+
Sbjct: 416 MNDLVSEYQQYQDATADEEDEYDEEE 441
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 158 bits (384), Expect = 7e-39
Identities = 70/94 (74%), Positives = 85/94 (90%)
Frame = +2
Query: 80 DIPPKGLKMSSTFIGNTTAIQELFKRISEQFSAMFRRKAFLHWYTGEGMDEMEFNEAESN 259
DIPP GLKM+STFIGN+T+IQE+F+R+SEQF+AMFRRKAFLHWYTGEGMDEMEF EAESN
Sbjct: 355 DIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESN 414
Query: 260 VNDLVSEYQQYQDATAEDDTEFDQEDMEELAQDE 361
+NDLVSEYQQYQDATA+++ ++ E+ E Q+E
Sbjct: 415 MNDLVSEYQQYQDATADEEEGYEYEEDEVEVQEE 448
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 158 bits (384), Expect = 7e-39
Identities = 71/95 (74%), Positives = 86/95 (90%), Gaps = 1/95 (1%)
Frame = +2
Query: 80 DIPPKGLKMSSTFIGNTTAIQELFKRISEQFSAMFRRKAFLHWYTGEGMDEMEFNEAESN 259
DI P+GL M+STFIGN+T+IQE+F+R+SEQF+AMFRRKAFLHWYTGEGMDEMEF EAESN
Sbjct: 355 DIAPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESN 414
Query: 260 VNDLVSEYQQYQDATAEDDTEFDQ-EDMEELAQDE 361
+NDLVSEYQQYQDATA+D+ E+++ ED EE+ E
Sbjct: 415 MNDLVSEYQQYQDATADDEGEYEEDEDEEEILDHE 449
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 152 bits (369), Expect = 5e-37
Identities = 68/88 (77%), Positives = 83/88 (94%)
Frame = +2
Query: 80 DIPPKGLKMSSTFIGNTTAIQELFKRISEQFSAMFRRKAFLHWYTGEGMDEMEFNEAESN 259
DI PKGLKM+STFIGN+T+IQE+F+R+SEQF+AMFRRKAFLHWYTGEGMDEMEF EAESN
Sbjct: 355 DIAPKGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESN 414
Query: 260 VNDLVSEYQQYQDATAEDDTEFDQEDME 343
+NDLV+EYQQYQDATA ++ E+++E+ E
Sbjct: 415 MNDLVAEYQQYQDATAGEE-EYEEEEEE 441
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 149 bits (362), Expect = 3e-36
Identities = 68/89 (76%), Positives = 81/89 (91%), Gaps = 1/89 (1%)
Frame = +2
Query: 80 DIPPKGLKMSSTFIGNTTAIQELFKRISEQFSAMFRRKAFLHWYTGEGMDEMEFNEAESN 259
DI P GLKM+STFIGN+T+IQE+F+R+SEQF+AMFRRKAFLHWYTGEGMDEMEF EAESN
Sbjct: 355 DIAPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESN 414
Query: 260 VNDLVSEYQQYQDAT-AEDDTEFDQEDME 343
+NDLV+EYQQYQDAT E++ E D+E+ E
Sbjct: 415 MNDLVAEYQQYQDATVGEEEYEEDEEEEE 443
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 74.5 bits (175), Expect = 2e-13
Identities = 32/72 (44%), Positives = 46/72 (63%)
Frame = +2
Query: 119 IGNTTAIQELFKRISEQFSAMFRRKAFLHWYTGEGMDEMEFNEAESNVNDLVSEYQQYQD 298
I N TA+ E+F RI +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 378 ISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGG 437
Query: 299 ATAEDDTEFDQE 334
AEDD E E
Sbjct: 438 EGAEDDDEEGDE 449
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 71.7 bits (168), Expect = 1e-12
Identities = 32/73 (43%), Positives = 47/73 (64%)
Frame = +2
Query: 119 IGNTTAIQELFKRISEQFSAMFRRKAFLHWYTGEGMDEMEFNEAESNVNDLVSEYQQYQD 298
I N TA+ E+F RI +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 378 ISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV-G 436
Query: 299 ATAEDDTEFDQED 337
A DD E + ED
Sbjct: 437 AEGGDDEEDEGED 449
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 71.7 bits (168), Expect = 1e-12
Identities = 32/73 (43%), Positives = 47/73 (64%)
Frame = +2
Query: 119 IGNTTAIQELFKRISEQFSAMFRRKAFLHWYTGEGMDEMEFNEAESNVNDLVSEYQQYQD 298
I N TA+ E+F RI +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 378 ISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV-G 436
Query: 299 ATAEDDTEFDQED 337
A DD E + ED
Sbjct: 437 AEGGDDEEDEGED 449
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 68.5 bits (160), Expect = 1e-11
Identities = 27/72 (37%), Positives = 47/72 (65%)
Frame = +2
Query: 119 IGNTTAIQELFKRISEQFSAMFRRKAFLHWYTGEGMDEMEFNEAESNVNDLVSEYQQYQD 298
I N+T++ E+F RI +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 378 ISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGA 437
Query: 299 ATAEDDTEFDQE 334
+D+ + +E
Sbjct: 438 EGGDDEDDEGEE 449
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 68.5 bits (160), Expect = 1e-11
Identities = 27/72 (37%), Positives = 47/72 (65%)
Frame = +2
Query: 119 IGNTTAIQELFKRISEQFSAMFRRKAFLHWYTGEGMDEMEFNEAESNVNDLVSEYQQYQD 298
I N+T++ E+F RI +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 378 ISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGA 437
Query: 299 ATAEDDTEFDQE 334
+D+ + +E
Sbjct: 438 EGGDDEDDEGEE 449
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 68.5 bits (160), Expect = 1e-11
Identities = 27/72 (37%), Positives = 47/72 (65%)
Frame = +2
Query: 119 IGNTTAIQELFKRISEQFSAMFRRKAFLHWYTGEGMDEMEFNEAESNVNDLVSEYQQYQD 298
I N+T++ E+F RI +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 378 ISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGA 437
Query: 299 ATAEDDTEFDQE 334
+D+ + +E
Sbjct: 438 EGGDDEDDEGEE 449
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 37.9 bits (84), Expect = 0.017
Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Frame = +2
Query: 101 KMSSTFIGNTTAIQELFKRISEQFSAMFRRKAFLHWYTGEGM----DEMEFNEAESNVND 268
++S + + T+I+ LF + Q+ + +++AFL Y M D EF+E+ +
Sbjct: 374 RVSGLMLASHTSIRHLFSKCLSQYDKLRKKQAFLDNYRKFPMFADNDLSEFDESRDIIES 433
Query: 269 LVSEYQQYQDATAEDDTEFDQEDMEELAQDE 361
LV EY+ + + D ++ ED E+L E
Sbjct: 434 LVDEYKACE---SPDYIKWGMEDPEQLMTGE 461
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 36.3 bits (80), Expect = 0.051
Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
Frame = +2
Query: 101 KMSSTFIGNTTAIQELFKRISEQFSAMFRRKAFLHWYTGEGM----DEMEFNEAESNVND 268
++S + + T+I+ LF R Q+ + +++AFL Y M D EF+E+ +
Sbjct: 374 RVSGLMLASHTSIRHLFSRCLSQYDKLRKKQAFLDNYRKFPMFADNDLSEFDESRDIIES 433
Query: 269 LVSEYQQYQDATAEDDTEFDQEDMEELAQDE 361
LV EY+ + + D ++ ED +L E
Sbjct: 434 LVDEYKACE---SPDYIKWGMEDPGQLMTGE 461
>At5g56950.1 68418.m07109 nucleosome assembly protein (NAP),
putative similar to nucleosome assembly protein 1
[Glycine max] GI:1161252; contains Pfam profile PF00956:
Nucleosome assembly protein (NAP)
Length = 374
Score = 34.7 bits (76), Expect = 0.16
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +2
Query: 206 WYTGEGMDEMEFNEAESNVNDLVSEYQQYQDATAEDDTEFDQEDMEE 346
W+TGE ++ EF E +++ D + E + + ++D E D ED EE
Sbjct: 293 WFTGEAIEGEEF-EIDNDDEDDIDEDEDEDEEDEDEDEEEDDEDEEE 338
>At4g26110.1 68417.m03759 nucleosome assembly protein (NAP),
putative similar to nucleosome assembly protein 1
[Glycine max] GI:1161252; contains Pfam profile PF00956:
Nucleosome assembly protein (NAP)
Length = 372
Score = 33.5 bits (73), Expect = 0.36
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = +2
Query: 206 WYTGEGMDEMEFNEAESNVNDLVSEYQQYQDATAEDDTEFDQEDMEE 346
W+TGE M+ +F E + + D + E + +D ED+ + D ED EE
Sbjct: 294 WFTGEAMEAEDF-EIDDDEEDDIDEDEDEED--EEDEEDDDDEDEEE 337
>At3g24080.1 68416.m03024 KRR1 family protein contains Pfam PF05178:
Krr1 family
Length = 638
Score = 31.1 bits (67), Expect = 1.9
Identities = 14/47 (29%), Positives = 28/47 (59%)
Frame = +2
Query: 224 MDEMEFNEAESNVNDLVSEYQQYQDATAEDDTEFDQEDMEELAQDEH 364
MDE +EAE+ N + +Y Q +++ +E+++EL++D+H
Sbjct: 206 MDEYYGDEAEATENQFLKDYLVKQLWKEKEERVPGEEELKELSEDDH 252
>At4g05420.1 68417.m00824 UV-damaged DNA-binding protein, putative
similar to UV-damaged DNA binding protein (GI:12082087)
[Oryza sativa]; contains Pfam PF03178 : CPSF A subunit
region
Length = 1088
Score = 30.3 bits (65), Expect = 3.3
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -1
Query: 410 VTRFHRWEV*NRFNHGARLERAPPYLPGQIPCHLQRSRPGTAGI 279
V +H E NRF HG+ + R P GQIP + + G G+
Sbjct: 954 VGEYHLGEFVNRFRHGSLVMRLPDSEIGQIPTVIFGTVNGVIGV 997
>At3g50690.1 68416.m05546 leucine-rich repeat family protein
Length = 447
Score = 30.3 bits (65), Expect = 3.3
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +2
Query: 227 DEMEFNEAESNVNDLVSEYQQYQDATAEDDTEFDQEDMEELAQDEHHD 370
D+ E E E ++ V E + +D+ E+D D+ED EE ++E D
Sbjct: 262 DDSESGEEEVGEDNDVVEVHEIEDSENEEDGVDDEEDDEEDEEEEEVD 309
>At2g34030.1 68415.m04166 calcium-binding EF hand family protein
contains INTERPRO:IPR002048 calcium-binding EF-hand
domain
Length = 566
Score = 30.3 bits (65), Expect = 3.3
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +2
Query: 191 KAFLHWYTGEGMDEMEFNEAESNVNDLVSEYQQYQDATAEDDTE 322
KAFL + G+ E+E NE E + L+ +Y+ + E+ TE
Sbjct: 343 KAFLEDFDGDNDGELEENEFEEGIARLLKQYKFNVEDQRENQTE 386
>At4g08810.1 68417.m01450 expressed protein
Length = 552
Score = 29.9 bits (64), Expect = 4.4
Identities = 17/64 (26%), Positives = 29/64 (45%)
Frame = +3
Query: 153 REYQSSSPLCSDARLSCTGTPARAWTRWNSTRRRAMSMIWFRNTSSTRTRPLKMTRNLTR 332
R Y L A + G R W +WN +R + + R + R PL+++++ +
Sbjct: 309 RYYFDFEHLKETASIVEEGEFLRDWKKWNRLHKRKVPV---RKVKTHRVSPLQLSKDKST 365
Query: 333 KIWR 344
IWR
Sbjct: 366 IIWR 369
>At3g47490.2 68416.m05164 HNH endonuclease domain-containing protein
contains Pfam domain PF01844: HNH endonuclease
Length = 176
Score = 29.9 bits (64), Expect = 4.4
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +3
Query: 108 PRHSSVTPQPSRSCLREYQSSSPLCSDARLSCTGTPAR 221
P+HS++ P P+R R SSSP + LS +G+P R
Sbjct: 35 PQHSAMKPDPTRRRNRALSSSSPSKTRPELS-SGSPNR 71
>At3g47490.1 68416.m05165 HNH endonuclease domain-containing protein
contains Pfam domain PF01844: HNH endonuclease
Length = 234
Score = 29.9 bits (64), Expect = 4.4
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +3
Query: 108 PRHSSVTPQPSRSCLREYQSSSPLCSDARLSCTGTPAR 221
P+HS++ P P+R R SSSP + LS +G+P R
Sbjct: 35 PQHSAMKPDPTRRRNRALSSSSPSKTRPELS-SGSPNR 71
>At2g19480.1 68415.m02277 nucleosome assembly protein (NAP),
putative similar to nucleosome assembly protein 1
[Glycine max] GI:1161252; contains Pfam profile PF00956:
Nucleosome assembly protein (NAP)
Length = 379
Score = 29.9 bits (64), Expect = 4.4
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +2
Query: 206 WYTGEGM--DEMEFNEAESNVNDLVSEYQQYQDATAEDDTEFDQEDMEE 346
W+TGE + D+++ + + +++ E + D EDD E D ED +E
Sbjct: 293 WFTGEAVEADDLDIEDDDDEIDEDDDEEDEEDD---EDDEEEDDEDDDE 338
>At5g36930.1 68418.m04427 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1188
Score = 29.5 bits (63), Expect = 5.8
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = -3
Query: 276 ETKSLTLLSASLNSISSMPSPVYQCKKALRLNIAENCSDIL 154
E +SLT L A ++ +PS + Q KK RL++ C +L
Sbjct: 714 ELESLTTLLADFTALREIPSTINQLKKLKRLSL-NGCKGLL 753
>At1g73080.1 68414.m08450 leucine-rich repeat transmembrane protein
kinase, putative similar to receptor protein kinase
GI:1389566 from [Arabidopsis thaliana]
Length = 1123
Score = 29.5 bits (63), Expect = 5.8
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = -3
Query: 276 ETKSLTLLSASLNSIS-SMPSPVYQCKKALRLNIAEN 169
E KSL +L S N+ S ++PS + C K L+++EN
Sbjct: 97 ELKSLQILDLSTNNFSGTIPSTLGNCTKLATLDLSEN 133
>At5g44280.1 68418.m05420 zinc finger (C3HC4-type RING finger)
family protein contains similarity to polycomb-M33
interacting protein Ring1B [Mus musculus] GI:2239142;
contains Pfam profile PF00097: Zinc finger, C3HC4 type
(RING finger)
Length = 486
Score = 29.1 bits (62), Expect = 7.7
Identities = 13/51 (25%), Positives = 30/51 (58%)
Frame = +2
Query: 218 EGMDEMEFNEAESNVNDLVSEYQQYQDATAEDDTEFDQEDMEELAQDEHHD 370
E + ++ N+AE + + +E + ++ AE+D E ++E+ EE ++E +
Sbjct: 55 EDQEVVKPNDAEEDDDGDDAEEDEEEEVEAEEDEEAEEEEEEEEEEEEEEE 105
>At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein weak similarity to
CARS-Cyp [Homo sapiens] GI:1117968; contains Pfam
profile PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 837
Score = 29.1 bits (62), Expect = 7.7
Identities = 26/87 (29%), Positives = 38/87 (43%)
Frame = +3
Query: 99 SRCPRHSSVTPQPSRSCLREYQSSSPLCSDARLSCTGTPARAWTRWNSTRRRAMSMIWFR 278
SR P + PSRS +R S R S +P+R+ R +S R + S I
Sbjct: 485 SRSPVRGRIARSPSRSPVRSASRGSLGRGPLRRSSRRSPSRSPVR-SSRRSLSRSPIQLS 543
Query: 279 NTSSTRTRPLKMTRNLTRKIWRSSLKT 359
S +R+ R+L+R RS K+
Sbjct: 544 RRSLSRSPTRLSRRSLSRSPIRSPRKS 570
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,791,859
Number of Sequences: 28952
Number of extensions: 345524
Number of successful extensions: 1120
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 1043
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1112
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 3903629760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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