Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_A03_e17_01.seq
         (1445 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A6RGJ8 Cluster: Predicted protein; n=1; Ajellomyces cap...    38   0.86 
UniRef50_UPI00006CA42A Cluster: hypothetical protein TTHERM_0052...    35   6.1  

>UniRef50_A6RGJ8 Cluster: Predicted protein; n=1; Ajellomyces
            capsulatus NAm1|Rep: Predicted protein - Ajellomyces
            capsulatus NAm1
          Length = 757

 Score = 37.5 bits (83), Expect = 0.86
 Identities = 19/53 (35%), Positives = 20/53 (37%)
 Frame = -1

Query: 1406 GGXAGGXGXPXXXXGGXXFSXIRXGPXXXPPXXXXXXXGPPXGXXXXXXXPPG 1248
            GG  GG G P    GG   +  R G    PP       GPP G       PPG
Sbjct: 355  GGGGGGGGGPPEGGGGSDGAPGRGGGGGGPPGGGGGGGGPPGGGGGGGGGPPG 407


>UniRef50_UPI00006CA42A Cluster: hypothetical protein
           TTHERM_00527360; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00527360 - Tetrahymena
           thermophila SB210
          Length = 1940

 Score = 34.7 bits (76), Expect = 6.1
 Identities = 15/35 (42%), Positives = 26/35 (74%), Gaps = 1/35 (2%)
 Frame = -3

Query: 579 LNYNNVFVI-KKINIVFNYNLI*FYDIFTQQQRDK 478
           +NYN++++  +KI +++N NLI  YDI TQ ++ K
Sbjct: 635 INYNSIYIENQKIALIYNTNLIYTYDIETQTEKTK 669


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,161,154,512
Number of Sequences: 1657284
Number of extensions: 20926230
Number of successful extensions: 33886
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 28896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32845
length of database: 575,637,011
effective HSP length: 104
effective length of database: 403,279,475
effective search space used: 152036362075
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)