Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_A03_e17_01.seq
         (1445 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0561 - 24984960-24985205,24985283-24985354,24985906-249859...    29   9.1  

>11_06_0561 - 24984960-24985205,24985283-24985354,24985906-24985977,
            24986612-24986782,24987464-24987653,24987733-24987976,
            24988162-24988474,24988687-24989517,24989628-24989672,
            24989677-24989790,24989877-24990371,24990627-24990824,
            24990902-24991357
          Length = 1148

 Score = 29.1 bits (62), Expect = 9.1
 Identities = 15/54 (27%), Positives = 15/54 (27%), Gaps = 1/54 (1%)
 Frame = -1

Query: 1406 GGXAGGXGXPXXXXGGXXFSXIRXGP-XXXPPXXXXXXXGPPXGXXXXXXXPPG 1248
            GG  GG G P    GG         P    PP       G P         P G
Sbjct: 69   GGQGGGGGGPVSGGGGSAPGGAATAPRQGAPPAAATSVQGAPRAPATAATVPQG 122


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,174,273
Number of Sequences: 37544
Number of extensions: 625076
Number of successful extensions: 1152
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1086
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1145
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4594434768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)