Samia BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_A03_e17_01.seq
         (1445 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF216663-1|AAF32293.1| 2263|Drosophila melanogaster guanine-nucl...    30   6.8  
AF215635-1|AAF25952.1| 2263|Drosophila melanogaster Rho family g...    30   6.8  
AE014296-165|AAN11455.1| 2263|Drosophila melanogaster CG18214-PC...    30   6.8  
AE014296-164|AAF47436.3| 2263|Drosophila melanogaster CG18214-PA...    30   6.8  
AB035419-1|BAA96093.1| 2263|Drosophila melanogaster Trio protein.      30   6.8  

>AF216663-1|AAF32293.1| 2263|Drosophila melanogaster
            guanine-nucleotide-exchange-factorTRIO protein.
          Length = 2263

 Score = 30.3 bits (65), Expect = 6.8
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 261  AFVNIIYFTEIFCFILNIGERPYKSHEAR-NGGGGSDKNQ 377
            A +N     E  C +L+  ER YK  +   +GGGGSDK Q
Sbjct: 1001 ASINFYKTAEQVCSVLDSLEREYKREDDWCDGGGGSDKAQ 1040


>AF215635-1|AAF25952.1| 2263|Drosophila melanogaster Rho family
            guanine nucleotideexchange factor Trio protein.
          Length = 2263

 Score = 30.3 bits (65), Expect = 6.8
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 261  AFVNIIYFTEIFCFILNIGERPYKSHEAR-NGGGGSDKNQ 377
            A +N     E  C +L+  ER YK  +   +GGGGSDK Q
Sbjct: 1001 ASINFYKTAEQVCSVLDSLEREYKREDDWCDGGGGSDKAQ 1040


>AE014296-165|AAN11455.1| 2263|Drosophila melanogaster CG18214-PC,
            isoform C protein.
          Length = 2263

 Score = 30.3 bits (65), Expect = 6.8
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 261  AFVNIIYFTEIFCFILNIGERPYKSHEAR-NGGGGSDKNQ 377
            A +N     E  C +L+  ER YK  +   +GGGGSDK Q
Sbjct: 1001 ASINFYKTAEQVCSVLDSLEREYKREDDWCDGGGGSDKAQ 1040


>AE014296-164|AAF47436.3| 2263|Drosophila melanogaster CG18214-PA,
            isoform A protein.
          Length = 2263

 Score = 30.3 bits (65), Expect = 6.8
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 261  AFVNIIYFTEIFCFILNIGERPYKSHEAR-NGGGGSDKNQ 377
            A +N     E  C +L+  ER YK  +   +GGGGSDK Q
Sbjct: 1001 ASINFYKTAEQVCSVLDSLEREYKREDDWCDGGGGSDKAQ 1040


>AB035419-1|BAA96093.1| 2263|Drosophila melanogaster Trio protein.
          Length = 2263

 Score = 30.3 bits (65), Expect = 6.8
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 261  AFVNIIYFTEIFCFILNIGERPYKSHEAR-NGGGGSDKNQ 377
            A +N     E  C +L+  ER YK  +   +GGGGSDK Q
Sbjct: 1001 ASINFYKTAEQVCSVLDSLEREYKREDDWCDGGGGSDKAQ 1040


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,147,941
Number of Sequences: 53049
Number of extensions: 1014745
Number of successful extensions: 1885
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1835
length of database: 24,988,368
effective HSP length: 88
effective length of database: 20,320,056
effective search space used: 7985782008
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)