Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_A02_e9_02.seq
         (1470 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    25   1.4  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    23   5.7  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    23   7.6  

>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = -2

Query: 341 PMLVIKSRTLMPSKAFANRPGQYGSTSTAAAFSMVEIFSPVTATSSST 198
           P  VI + T  PS   +NR   +G    A A S V   +P+  T+S+T
Sbjct: 124 PSGVISTNTSPPSPILSNR---FGENEEADAASNVISSTPLPPTTSTT 168


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 23.0 bits (47), Expect = 5.7
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 8/56 (14%)
 Frame = +1

Query: 160 KAELACVYSALILVDD--------DVAVTGEKISTILKAAAVDVEPYWPGLFAKAL 303
           K EL C+ + ++   D        +V +  EKI  +L+       P  PG FAK L
Sbjct: 310 KTELGCLRAIILYNPDVRGIKSVQEVEMLREKIYGVLEEYTRTTHPNEPGRFAKLL 365


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface protein
            chaoptin protein.
          Length = 782

 Score = 22.6 bits (46), Expect = 7.6
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 961  SLFKERGLQRQRAKNXFXGDGPLXNL 1038
            +LF+E GL+R    +   G  PL +L
Sbjct: 338  NLFRETGLERLDVSHNLLGKLPLTSL 363


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,393
Number of Sequences: 336
Number of extensions: 3649
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 60
effective length of database: 102,425
effective search space used: 43940325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)