Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_A02_e9_02.seq
         (1470 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M17886-1|AAA36471.1|  114|Homo sapiens protein ( Human acidic ri...   102   3e-21
BC007590-1|AAH07590.1|  114|Homo sapiens ribosomal protein, larg...   102   3e-21
BC003369-1|AAH03369.1|  114|Homo sapiens ribosomal protein, larg...   102   3e-21
AB061836-1|BAB79474.1|  114|Homo sapiens ribosomal protein P1 pr...   102   3e-21
CR450339-1|CAG29335.1|  114|Homo sapiens RPLP1 protein.               102   4e-21
AY303789-1|AAP68820.1|  113|Homo sapiens acidic ribosomal phosph...   100   2e-20
CR542209-1|CAG47005.1|  114|Homo sapiens RPLP1 protein.                96   3e-19

>M17886-1|AAA36471.1|  114|Homo sapiens protein ( Human acidic
           ribosomal phosphoprotein P1 mRNA, complete cds. ).
          Length = 114

 Score =  102 bits (245), Expect = 3e-21
 Identities = 52/114 (45%), Positives = 65/114 (57%), Gaps = 3/114 (2%)
 Frame = +1

Query: 151 MASKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 330
           MAS +ELAC+YSALIL DD+V VT +KI+ ++KAA V+VEP+WPGLFAKAL  +N+  LI
Sbjct: 1   MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLI 60

Query: 331 TNIGSG---VXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFGLFD 483
            N+G+G                                      DDDMGFGLFD
Sbjct: 61  CNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD 114


>BC007590-1|AAH07590.1|  114|Homo sapiens ribosomal protein, large,
           P1 protein.
          Length = 114

 Score =  102 bits (245), Expect = 3e-21
 Identities = 52/114 (45%), Positives = 65/114 (57%), Gaps = 3/114 (2%)
 Frame = +1

Query: 151 MASKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 330
           MAS +ELAC+YSALIL DD+V VT +KI+ ++KAA V+VEP+WPGLFAKAL  +N+  LI
Sbjct: 1   MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLI 60

Query: 331 TNIGSG---VXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFGLFD 483
            N+G+G                                      DDDMGFGLFD
Sbjct: 61  CNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD 114


>BC003369-1|AAH03369.1|  114|Homo sapiens ribosomal protein, large,
           P1 protein.
          Length = 114

 Score =  102 bits (245), Expect = 3e-21
 Identities = 52/114 (45%), Positives = 65/114 (57%), Gaps = 3/114 (2%)
 Frame = +1

Query: 151 MASKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 330
           MAS +ELAC+YSALIL DD+V VT +KI+ ++KAA V+VEP+WPGLFAKAL  +N+  LI
Sbjct: 1   MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLI 60

Query: 331 TNIGSG---VXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFGLFD 483
            N+G+G                                      DDDMGFGLFD
Sbjct: 61  CNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD 114


>AB061836-1|BAB79474.1|  114|Homo sapiens ribosomal protein P1
           protein.
          Length = 114

 Score =  102 bits (245), Expect = 3e-21
 Identities = 52/114 (45%), Positives = 65/114 (57%), Gaps = 3/114 (2%)
 Frame = +1

Query: 151 MASKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 330
           MAS +ELAC+YSALIL DD+V VT +KI+ ++KAA V+VEP+WPGLFAKAL  +N+  LI
Sbjct: 1   MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLI 60

Query: 331 TNIGSG---VXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFGLFD 483
            N+G+G                                      DDDMGFGLFD
Sbjct: 61  CNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD 114


>CR450339-1|CAG29335.1|  114|Homo sapiens RPLP1 protein.
          Length = 114

 Score =  102 bits (244), Expect = 4e-21
 Identities = 51/114 (44%), Positives = 65/114 (57%), Gaps = 3/114 (2%)
 Frame = +1

Query: 151 MASKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 330
           MAS +ELAC+YSAL+L DD+V VT +KI+ ++KAA V+VEP+WPGLFAKAL  +N+  LI
Sbjct: 1   MASVSELACIYSALVLHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLI 60

Query: 331 TNIGSG---VXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFGLFD 483
            N+G+G                                      DDDMGFGLFD
Sbjct: 61  CNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD 114


>AY303789-1|AAP68820.1|  113|Homo sapiens acidic ribosomal
           phosphoprotein P1 protein.
          Length = 113

 Score =  100 bits (239), Expect = 2e-20
 Identities = 51/113 (45%), Positives = 64/113 (56%), Gaps = 3/113 (2%)
 Frame = +1

Query: 151 MASKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 330
           MAS +ELAC+YSALIL DD+V VT +KI+ ++KAA V+VEP+WPGLFAKAL  +N+  LI
Sbjct: 1   MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLI 60

Query: 331 TNIGSG---VXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFGLF 480
            N+G+G                                      DDDMGFGLF
Sbjct: 61  CNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLF 113


>CR542209-1|CAG47005.1|  114|Homo sapiens RPLP1 protein.
          Length = 114

 Score = 95.9 bits (228), Expect = 3e-19
 Identities = 50/114 (43%), Positives = 64/114 (56%), Gaps = 3/114 (2%)
 Frame = +1

Query: 151 MASKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 330
           MAS +ELA +YSALIL DD+V VT +KI+ ++KAA V+VEP+WPGLFAKAL  +N+  LI
Sbjct: 1   MASVSELARIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLI 60

Query: 331 TNIGSG---VXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFGLFD 483
            ++G+G                                      DDDMGFGLFD
Sbjct: 61  CDVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD 114


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,559,683
Number of Sequences: 237096
Number of extensions: 2620889
Number of successful extensions: 6855
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6852
length of database: 76,859,062
effective HSP length: 93
effective length of database: 54,809,134
effective search space used: 21704417064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)