Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030623sawa_A02_e9_02.seq
(1470 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g00810.2 68417.m00112 60S acidic ribosomal protein P1 (RPP1B)... 85 8e-17
At4g00810.1 68417.m00111 60S acidic ribosomal protein P1 (RPP1B)... 85 8e-17
At1g01100.2 68414.m00013 60S acidic ribosomal protein P1 (RPP1A)... 85 1e-16
At1g01100.1 68414.m00012 60S acidic ribosomal protein P1 (RPP1A)... 85 1e-16
At5g47700.1 68418.m05889 60S acidic ribosomal protein P1 (RPP1C) 84 2e-16
At5g24510.1 68418.m02889 60s acidic ribosomal protein P1, putative 79 6e-15
At3g49460.1 68416.m05406 60S acidic ribosomal protein-related co... 38 0.022
>At4g00810.2 68417.m00112 60S acidic ribosomal protein P1 (RPP1B)
similar to acidic ribosomal protein p1
Length = 113
Score = 85.4 bits (202), Expect = 8e-17
Identities = 43/113 (38%), Positives = 59/113 (52%), Gaps = 2/113 (1%)
Frame = +1
Query: 151 MASKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 330
M++ ELAC Y+ +IL D+ +A+T +KI+T++KAA V++E YWP LFAK E NV DLI
Sbjct: 1 MSTVGELACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLI 60
Query: 331 TNIGSGVXXXXX--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFGLFD 483
N+G+G D D+GFGLFD
Sbjct: 61 MNVGAGGGGGGAPVSAAAPAAAGGAAAAAPAKEEKKDEPAEESDGDLGFGLFD 113
>At4g00810.1 68417.m00111 60S acidic ribosomal protein P1 (RPP1B)
similar to acidic ribosomal protein p1
Length = 113
Score = 85.4 bits (202), Expect = 8e-17
Identities = 43/113 (38%), Positives = 59/113 (52%), Gaps = 2/113 (1%)
Frame = +1
Query: 151 MASKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 330
M++ ELAC Y+ +IL D+ +A+T +KI+T++KAA V++E YWP LFAK E NV DLI
Sbjct: 1 MSTVGELACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLI 60
Query: 331 TNIGSGVXXXXX--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFGLFD 483
N+G+G D D+GFGLFD
Sbjct: 61 MNVGAGGGGGGAPVSAAAPAAAGGAAAAAPAKEEKKDEPAEESDGDLGFGLFD 113
>At1g01100.2 68414.m00013 60S acidic ribosomal protein P1 (RPP1A)
similar to 60S ACIDIC RIBOSOMAL PROTEIN P1 GB:O23095
from [Arabidopsis thaliana]
Length = 112
Score = 85.0 bits (201), Expect = 1e-16
Identities = 43/112 (38%), Positives = 58/112 (51%), Gaps = 1/112 (0%)
Frame = +1
Query: 151 MASKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 330
M++ ELAC Y+ +IL D+ +A+T +KI+T++KAA V +E YWP LFAK E NV DLI
Sbjct: 1 MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLI 60
Query: 331 TNIGSGVXXXX-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFGLFD 483
N+G+G D D+GFGLFD
Sbjct: 61 MNVGAGGGGGAPVAAAAPAAGGGAAAAPAAEEKKKDEPAEESDGDLGFGLFD 112
>At1g01100.1 68414.m00012 60S acidic ribosomal protein P1 (RPP1A)
similar to 60S ACIDIC RIBOSOMAL PROTEIN P1 GB:O23095
from [Arabidopsis thaliana]
Length = 112
Score = 85.0 bits (201), Expect = 1e-16
Identities = 43/112 (38%), Positives = 58/112 (51%), Gaps = 1/112 (0%)
Frame = +1
Query: 151 MASKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 330
M++ ELAC Y+ +IL D+ +A+T +KI+T++KAA V +E YWP LFAK E NV DLI
Sbjct: 1 MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLI 60
Query: 331 TNIGSGVXXXX-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFGLFD 483
N+G+G D D+GFGLFD
Sbjct: 61 MNVGAGGGGGAPVAAAAPAAGGGAAAAPAAEEKKKDEPAEESDGDLGFGLFD 112
>At5g47700.1 68418.m05889 60S acidic ribosomal protein P1 (RPP1C)
Length = 113
Score = 84.2 bits (199), Expect = 2e-16
Identities = 43/113 (38%), Positives = 58/113 (51%), Gaps = 2/113 (1%)
Frame = +1
Query: 151 MASKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 330
M++ ELAC Y+ +IL D+ +A+T +KI+T++KAA V +E YWP LFAK E NV DLI
Sbjct: 1 MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLI 60
Query: 331 TNIGSGVXXXX--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFGLFD 483
N+G+G D D+GFGLFD
Sbjct: 61 MNVGAGGGGGAPVAAAAPAAGGGAAAAAPAAEEKKKDEPAEESDGDLGFGLFD 113
>At5g24510.1 68418.m02889 60s acidic ribosomal protein P1, putative
Length = 111
Score = 79.4 bits (187), Expect = 6e-15
Identities = 36/64 (56%), Positives = 46/64 (71%)
Frame = +1
Query: 157 SKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITN 336
S +ELAC Y+ALIL DD + +T E IS ++K A V+VE YWP LFAK E N+ DLI N
Sbjct: 2 STSELACTYAALILHDDGIEITAENISKLVKTANVNVESYWPSLFAKLCEKKNIDDLIMN 61
Query: 337 IGSG 348
+G+G
Sbjct: 62 VGAG 65
>At3g49460.1 68416.m05406 60S acidic ribosomal protein-related
contains weak similarity to Swiss-Prot:52855 60S acidic
ribosomal protein P1 (L12) [Zea mays]
Length = 46
Score = 37.5 bits (83), Expect = 0.022
Identities = 20/41 (48%), Positives = 28/41 (68%)
Frame = +1
Query: 166 ELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGL 288
ELAC Y+AL+L D VT +ST++K A +++E YWP L
Sbjct: 5 ELACTYAALLLHDH---VT---MSTLVKTANLNIESYWPSL 39
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,768,297
Number of Sequences: 28952
Number of extensions: 323345
Number of successful extensions: 527
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 522
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 3903629760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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