Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_A01_e1_01.seq
         (1494 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    25   1.4  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    23   5.8  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    23   5.8  
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    23   5.8  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    23   5.8  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    23   5.8  
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    23   7.7  

>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +3

Query: 135 PIRHSKPLPGVPST--VKITPQSPPEGYNTPKPIPSNSASNESMG 263
           P   ++ LP   S   +K+       GYNT  P+PS+  S+ ++G
Sbjct: 369 PFSINRLLPTAESKADIKMYADMHQYGYNTLSPLPSSVHSHSTIG 413


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 23.0 bits (47), Expect = 5.8
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +3

Query: 207 GYNTPKPIPSNSASNESMGLLGEIVNEIQNRNFDSI 314
           GY+ PK I       +S+ L G ++  I+  +F+ +
Sbjct: 336 GYDNPKSIAIKVQYAKSLNLAGVMIWSIETDDFNGL 371



 Score = 22.6 bits (46), Expect = 7.7
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 198 PPEGYNTPKPIPSNSASNE 254
           PPE   TP+P P+ +  +E
Sbjct: 392 PPEPVPTPEPQPTQTTESE 410


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 23.0 bits (47), Expect = 5.8
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
 Frame = +2

Query: 551 KGXRHXPHQKALIQKYR--RFHDKXXXXXXXXXXXFETYPPSPXSTVKXYYPY 703
           +G  H P+Q  + Q+YR  R H +            E Y P   +TV    PY
Sbjct: 279 RGSMHFPNQYQMNQEYRTDRKHTQQHYQMNQNMYPGEMYNPE-HTTVNEAQPY 330


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 23.0 bits (47), Expect = 5.8
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = +3

Query: 198 PPEGYNTPKPIPSNSASNESMGLLGEIVNEIQNRNFDSIYSA 323
           PP+ Y   +  P+   +      +GEI+ +I N    S+  A
Sbjct: 17  PPQPYMNAQDAPAGGENEPRKQDIGEILQQIMNITDQSLDEA 58


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 23.0 bits (47), Expect = 5.8
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
 Frame = +2

Query: 551 KGXRHXPHQKALIQKYR--RFHDKXXXXXXXXXXXFETYPPSPXSTVKXYYPY 703
           +G  H P+Q  + Q+YR  R H +            E Y P   +TV    PY
Sbjct: 227 RGSMHFPNQYQMNQEYRTDRKHTQQHYQMNQNMYPGEMYNPE-HTTVNEAQPY 278


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 23.0 bits (47), Expect = 5.8
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
 Frame = +2

Query: 551 KGXRHXPHQKALIQKYR--RFHDKXXXXXXXXXXXFETYPPSPXSTVKXYYPY 703
           +G  H P+Q  + Q+YR  R H +            E Y P   +TV    PY
Sbjct: 410 RGSMHFPNQYQMNQEYRTDRKHTQQHYQMNQNMYPGEMYNPE-HTTVNEAQPY 461


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 22.6 bits (46), Expect = 7.7
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = +3

Query: 165 VPSTVKITPQSPPEGYNTPKPIPSNSASN 251
           VPST+   P    +  N P+  P N   N
Sbjct: 209 VPSTIPPPPPEEDDDSNIPQNNPKNKQHN 237


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,055
Number of Sequences: 336
Number of extensions: 4056
Number of successful extensions: 24
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 122,585
effective HSP length: 60
effective length of database: 102,425
effective search space used: 44759725
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)