Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_A01_e1_01.seq
         (1494 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    31   0.54 
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc...    27   5.0  
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar...    27   5.0  
SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||...    27   5.0  
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa...    27   5.0  
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos...    27   5.0  
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac...    27   5.0  
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c...    27   8.8  

>SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 231

 Score = 30.7 bits (66), Expect = 0.54
 Identities = 20/74 (27%), Positives = 34/74 (45%)
 Frame = +3

Query: 78  LADINEESSDNIYAIIEESPIRHSKPLPGVPSTVKITPQSPPEGYNTPKPIPSNSASNES 257
           +A  +  S  +  A    S  R + P+P +PS +   P +PP G+  PK + S     + 
Sbjct: 1   MASSSSSSGSSSPASKRSSRKRQTPPMPELPSFLLAFPHAPPLGFLRPK-LNSLVVQVKR 59

Query: 258 MGLLGEIVNEIQNR 299
            G+  E V  + +R
Sbjct: 60  QGITAEPVFNLYSR 73


>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 354

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 12  QNHTSXIKSTDXVDCIEEXXAPLADINEESSDNIYA 119
           Q +   + S   V  ++E  AP+ADI +E    IYA
Sbjct: 14  QKYAVTVDSESSVLALKEAIAPVADIEKERQRLIYA 49


>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
           Pop2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 703

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 17/40 (42%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
 Frame = -1

Query: 414 CNGQYSYRY-CPGYYLPSLSHFCLPSFLVKSKLNR*NRSY 298
           CNG  S    C   Y   L H C PSFL K   +  N SY
Sbjct: 67  CNGNTSSSLPCTDSYQYPLKHSCTPSFLRKFNESIENVSY 106


>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 18/35 (51%), Positives = 19/35 (54%)
 Frame = +3

Query: 132 SPIRHSKPLPGVPSTVKITPQSPPEGYNTPKPIPS 236
           SP   S P  G  S V  TP+SPPE     KPIPS
Sbjct: 196 SPKALSSPTQGASSNV--TPESPPE-----KPIPS 223


>SPAC3C7.06c |pit1||serine/threonine protein kinase
           Pit1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 650

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 20/67 (29%), Positives = 27/67 (40%)
 Frame = +3

Query: 87  INEESSDNIYAIIEESPIRHSKPLPGVPSTVKITPQSPPEGYNTPKPIPSNSASNESMGL 266
           +N ESS         SP  HSK L    +TV    +SPP  + T   +    A   S G 
Sbjct: 538 VNSESSKYSPRSSNHSPTLHSKDLHRDMATVNNYAKSPPSFHATQDLLRKTLAYTNSSGT 597

Query: 267 LGEIVNE 287
              + N+
Sbjct: 598 STVLSND 604


>SPBC11B10.05c |rsp1||random septum position protein
           Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 494

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
 Frame = +3

Query: 84  DINEESSDNIYAIIEESPIRH--SKPLPGVPSTVKITPQSPPEGYNTPKPIPSNSASNES 257
           +I  E SDN      E P RH  SKPLP  P  +  +  S      T   +   SA N+S
Sbjct: 290 EIKLEHSDNNSPSKPEIPFRHPTSKPLP--PKPLSRSKSSSLSRNQTRSQLNDLSAENDS 347

Query: 258 MGLLGEIVNEIQN 296
                E  +++Q+
Sbjct: 348 TSNSTEYDDQLQS 360


>SPCC736.14 |dis1||microtubule-associated protein Dis1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 882

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +3

Query: 123 IEESPIRHSKP-LPGVPSTVKITPQSPPEGYNTPKPIPSNSASNESM 260
           +   P + S+P LP V S +K +P         P P+PS++ S  S+
Sbjct: 534 VNAHPNQPSRPRLPRVASPLKTSPVKLAVTPQAPSPLPSSNPSQASL 580


>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 566

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 10/83 (12%)
 Frame = +3

Query: 42  DXVDCIEEXXAPLADI---------NEESSDNIYAIIEESPIRHSKPLPGVPSTVKITPQ 194
           D V  I+E  A L D+         N++S ++      +SP+   +P+    S+  +  +
Sbjct: 343 DSVIQIDESSAGLTDVISELNFTNHNDDSKNSNITTSNDSPVNEVEPMAPELSSA-VVEK 401

Query: 195 SPPEGYNTPKPIPSN-SASNESM 260
             PE Y +   +  N + SNES+
Sbjct: 402 KEPEDYESISAVDENTNDSNESL 424


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,730,813
Number of Sequences: 5004
Number of extensions: 65672
Number of successful extensions: 219
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 834495254
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)