Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_A01_e1_01.seq
         (1494 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0500 + 4338111-4338195,4339910-4340042,4340116-4340187,434...    33   0.77 
06_03_1310 + 29238644-29240260                                         31   2.3  
10_01_0286 - 2978630-2979075,2980050-2980194                           30   4.1  
06_01_1180 + 10141850-10141959,10142096-10142621                       29   7.2  
11_06_0610 - 25449085-25453284                                         29   9.5  

>08_01_0500 +
           4338111-4338195,4339910-4340042,4340116-4340187,
           4340524-4340587,4341383-4341459,4341586-4341657,
           4341741-4341853,4341995-4342126,4342204-4342545,
           4342628-4343022,4343293-4343603,4343967-4344066
          Length = 631

 Score = 32.7 bits (71), Expect = 0.77
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +3

Query: 147 SKPLPGVPSTVKITPQSPPEGYNTPKPIPSNSASNESMGLLGEI 278
           +KP PG P      P SPP  YN P P+ S  +S+ +  + G +
Sbjct: 181 TKPCPGAP------PFSPPPPYNPPTPVQSPGSSSSTGAIAGGV 218


>06_03_1310 + 29238644-29240260
          Length = 538

 Score = 31.1 bits (67), Expect = 2.3
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 132 SPIRHSKPLPGVPSTVKITPQSPPEGYNTPKPIP 233
           +P  H  P+PG PS+   +  SPP+G     P P
Sbjct: 465 TPPGHHAPVPGTPSSPPSSSWSPPQGGGGKLPFP 498


>10_01_0286 - 2978630-2979075,2980050-2980194
          Length = 196

 Score = 30.3 bits (65), Expect = 4.1
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +3

Query: 144 HSKPLPGVPSTVKITPQSPPEGYNTPKPIPS 236
           H+KP P  PST K  P+  P+    PKP P+
Sbjct: 154 HNKPAPAAPST-KPAPKPHPDQPPHPKPTPT 183


>06_01_1180 + 10141850-10141959,10142096-10142621
          Length = 211

 Score = 29.5 bits (63), Expect = 7.2
 Identities = 22/82 (26%), Positives = 31/82 (37%), Gaps = 2/82 (2%)
 Frame = +3

Query: 21  TSXIKSTD--XVDCIEEXXAPLADINEESSDNIYAIIEESPIRHSKPLPGVPSTVKITPQ 194
           T  I+  D   V  I+    PL  +   SS    A    +P+    P P   +    +P 
Sbjct: 111 TKTIQDADPHAVYLIDAVLMPLDVVVNVSSGGGAAAPSPAPVTSPAPAPAQATNPSPSPD 170

Query: 195 SPPEGYNTPKPIPSNSASNESM 260
           S P+     +  P NSAS   M
Sbjct: 171 SKPDNQPAAEQPPENSASRGGM 192


>11_06_0610 - 25449085-25453284
          Length = 1399

 Score = 29.1 bits (62), Expect = 9.5
 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +3

Query: 126 EESPIRHSKPLP-GVPSTVKITPQSPPEGYNTPKPIPSNSASNESM 260
           EE P   S P   G P   + +P+ PPE   TP P PS+  S   M
Sbjct: 446 EEPPAAPSTPTSHGPPPPEEESPEEPPEE-PTPSPTPSSPESPAKM 490


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,165,790
Number of Sequences: 37544
Number of extensions: 446659
Number of successful extensions: 1205
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1190
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4780068496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)