Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030623sawa_A01_e1_01.seq
(1494 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L16559-6|AAA27931.1| 397|Caenorhabditis elegans Hypothetical pr... 33 0.52
Z92831-7|CAB07369.2| 2396|Caenorhabditis elegans Hypothetical pr... 32 1.2
Z81066-8|CAB02974.2| 2396|Caenorhabditis elegans Hypothetical pr... 32 1.2
AL032646-7|CAA21680.1| 485|Caenorhabditis elegans Hypothetical ... 30 3.7
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 30 4.9
AF040646-1|AAK31537.1| 530|Caenorhabditis elegans Collagen prot... 29 6.4
AC024805-16|AAK39336.1| 448|Caenorhabditis elegans Hypothetical... 29 6.4
U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p... 29 8.5
U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr... 29 8.5
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ... 29 8.5
>L16559-6|AAA27931.1| 397|Caenorhabditis elegans Hypothetical
protein C06E1.8 protein.
Length = 397
Score = 33.1 bits (72), Expect = 0.52
Identities = 16/52 (30%), Positives = 29/52 (55%)
Frame = +3
Query: 87 INEESSDNIYAIIEESPIRHSKPLPGVPSTVKITPQSPPEGYNTPKPIPSNS 242
+N + ++ + + PI S P+P + S ++ PQ+P N PKPIP+ +
Sbjct: 167 LNLPTPQSLESSVPSLPIA-SIPIPALQSPIRSQPQTPSWLANLPKPIPTTA 217
>Z92831-7|CAB07369.2| 2396|Caenorhabditis elegans Hypothetical protein
F22G12.5 protein.
Length = 2396
Score = 31.9 bits (69), Expect = 1.2
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +3
Query: 132 SPIRHSKPLPGVPSTVKITPQSPPEGYNTPKPIPSNSASN 251
SPIR S P+P +T PQ PP + K IP +S+
Sbjct: 1486 SPIRTSSPVPSTQTTPSRPPQMPPPPPASGKTIPPPPSSS 1525
>Z81066-8|CAB02974.2| 2396|Caenorhabditis elegans Hypothetical protein
F22G12.5 protein.
Length = 2396
Score = 31.9 bits (69), Expect = 1.2
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +3
Query: 132 SPIRHSKPLPGVPSTVKITPQSPPEGYNTPKPIPSNSASN 251
SPIR S P+P +T PQ PP + K IP +S+
Sbjct: 1486 SPIRTSSPVPSTQTTPSRPPQMPPPPPASGKTIPPPPSSS 1525
>AL032646-7|CAA21680.1| 485|Caenorhabditis elegans Hypothetical
protein Y54E2A.8 protein.
Length = 485
Score = 30.3 bits (65), Expect = 3.7
Identities = 13/39 (33%), Positives = 17/39 (43%)
Frame = +3
Query: 132 SPIRHSKPLPGVPSTVKITPQSPPEGYNTPKPIPSNSAS 248
SP+ +P PS + + P PP Y TP P S
Sbjct: 178 SPLYKVLEIPATPSPIFVAPLPPPPAYTTPDVPPEPMCS 216
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical protein
K06A9.1b protein.
Length = 2232
Score = 29.9 bits (64), Expect = 4.9
Identities = 19/57 (33%), Positives = 27/57 (47%)
Frame = +3
Query: 165 VPSTVKITPQSPPEGYNTPKPIPSNSASNESMGLLGEIVNEIQNRNFDSIYSALTLP 335
VPST + +P G +TP P PS S S GE+ + + +I S +T P
Sbjct: 1258 VPSTSQ-SPNPSTSGSSTPTPNPSQSTSPVVSTTTGEMTSHGSTQTPSTIGSTVTQP 1313
>AF040646-1|AAK31537.1| 530|Caenorhabditis elegans Collagen protein
70 protein.
Length = 530
Score = 29.5 bits (63), Expect = 6.4
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 114 YAIIEESPIRHSKPLPGVPSTVKITPQSP 200
Y+++ +SP+ + G PS V +TP SP
Sbjct: 189 YSVVTDSPVVPPLVVTGTPSIVTVTPPSP 217
>AC024805-16|AAK39336.1| 448|Caenorhabditis elegans Hypothetical
protein Y51H7C.1 protein.
Length = 448
Score = 29.5 bits (63), Expect = 6.4
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 114 YAIIEESPIRHSKPLPGVPSTVKITPQSP 200
Y+++ +SP+ + G PS V +TP SP
Sbjct: 112 YSVVTDSPVVPPLVVTGTPSIVTVTPPSP 140
>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
protein 44, isoform f protein.
Length = 6994
Score = 29.1 bits (62), Expect = 8.5
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = +3
Query: 60 EEXXAPLADINEESSDNIYAIIEESPIRHSKPLPGVP-STVKITPQSPPEGYNTPKPIPS 236
E P +++EE + +IIE + S PLP +TV+ + Y T P
Sbjct: 5436 EPAAIPEPEVDEEELEQERSIIESEEYKTSSPLPPTSVTTVEHVEPAEIHKYRTTSPTIV 5495
Query: 237 NSASNESM 260
+ S+E +
Sbjct: 5496 TTVSSEHL 5503
>U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin
protein.
Length = 6994
Score = 29.1 bits (62), Expect = 8.5
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = +3
Query: 60 EEXXAPLADINEESSDNIYAIIEESPIRHSKPLPGVP-STVKITPQSPPEGYNTPKPIPS 236
E P +++EE + +IIE + S PLP +TV+ + Y T P
Sbjct: 5436 EPAAIPEPEVDEEELEQERSIIESEEYKTSSPLPPTSVTTVEHVEPAEIHKYRTTSPTIV 5495
Query: 237 NSASNESM 260
+ S+E +
Sbjct: 5496 TTVSSEHL 5503
>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
protein Y40C5A.3 protein.
Length = 2344
Score = 29.1 bits (62), Expect = 8.5
Identities = 19/61 (31%), Positives = 28/61 (45%)
Frame = +3
Query: 72 APLADINEESSDNIYAIIEESPIRHSKPLPGVPSTVKITPQSPPEGYNTPKPIPSNSASN 251
AP+ + S+ +I +I P+ S VPS+ +S TP P+ N ASN
Sbjct: 1617 APIPPASSPSAPSIPSIPSTLPVAPSSS--SVPSSPSAPSESTSTVSETPAPVNVNPASN 1674
Query: 252 E 254
E
Sbjct: 1675 E 1675
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,070,088
Number of Sequences: 27780
Number of extensions: 383816
Number of successful extensions: 1140
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1029
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1136
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 4297958014
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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