Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_A01_e1_01.seq
         (1494 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         23   5.1  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   5.1  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    23   5.1  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    23   5.1  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   6.8  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   6.8  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   6.8  

>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +2

Query: 158 TRCTVDGENYTA 193
           T+ T+DGE+YTA
Sbjct: 238 TKMTIDGESYTA 249


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 431 NTFWNSVMVSIHI 393
           NT W  VMVS+H+
Sbjct: 566 NTLWILVMVSVHV 578


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +2

Query: 158 TRCTVDGENYTA 193
           T+ T+DGE+YTA
Sbjct: 238 TKMTIDGESYTA 249


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +2

Query: 158 TRCTVDGENYTA 193
           T+ T+DGE+YTA
Sbjct: 238 TKMTIDGESYTA 249


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 6.8
 Identities = 16/83 (19%), Positives = 30/83 (36%)
 Frame = +3

Query: 24  SXIKSTDXVDCIEEXXAPLADINEESSDNIYAIIEESPIRHSKPLPGVPSTVKITPQSPP 203
           S I   D  +CIE+     AD+     +++Y  ++++ +  +     +           P
Sbjct: 61  SCISGRDRYECIEKVGKKEADVVAVDPEDMYLAVKDNKLASNAGYNVIEQVRTKEEPHAP 120

Query: 204 EGYNTPKPIPSNSASNESMGLLG 272
             Y     I  +   N   GL G
Sbjct: 121 YRYEAVAVIHKDLPINNVQGLRG 143


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 6.8
 Identities = 16/83 (19%), Positives = 30/83 (36%)
 Frame = +3

Query: 24  SXIKSTDXVDCIEEXXAPLADINEESSDNIYAIIEESPIRHSKPLPGVPSTVKITPQSPP 203
           S I   D  +CIE+     AD+     +++Y  ++++ +  +     +           P
Sbjct: 61  SCISGRDRYECIEKVGKKEADVVAVDPEDMYLAVKDNKLASNAGYNVIEQVRTKEEPHAP 120

Query: 204 EGYNTPKPIPSNSASNESMGLLG 272
             Y     I  +   N   GL G
Sbjct: 121 YRYEAVAVIHKDLPINNVQGLRG 143


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 6.8
 Identities = 16/83 (19%), Positives = 30/83 (36%)
 Frame = +3

Query: 24  SXIKSTDXVDCIEEXXAPLADINEESSDNIYAIIEESPIRHSKPLPGVPSTVKITPQSPP 203
           S I   D  +CIE+     AD+     +++Y  ++++ +  +     +           P
Sbjct: 61  SCISGRDRYECIEKVGKKEADVVAVDPEDMYLAVKDNKLASNAGYNVIEQVRTKEEPHAP 120

Query: 204 EGYNTPKPIPSNSASNESMGLLG 272
             Y     I  +   N   GL G
Sbjct: 121 YRYEAVAVIHKDLPINNVQGLRG 143


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 265,725
Number of Sequences: 438
Number of extensions: 5265
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 52156500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)