SilkBase
Last updated: 2022/11/18
GeneModel and EST Search
Retreive RNA-seq and GeneModel(2017) Under Construction
Command
name
(e.g. A_BomoFB_comp0_c0_seq1)
Dataset
RNA-seq
ORF_from_RNA-seq
GeneModel(2017)
Retreive Old GeneModel(2008) and EST
Command
Keyword
Keyword
(e.g. receptor)     Search Field
All
Name
Definition
Genome Position
Search Target
No use
Scaffold
chr1
chr2
chr3
chr4
chr5
chr6
chr7
chr8
chr9
chr10
chr11
chr12
chr13
chr14
chr15
chr16
chr17
chr18
chr19
chr20
chr21
chr22
chr23
chr24
chr25
chr26n
chr27n
chr28
unknown
   Scaffold Name
  
Dataset
All
EST
GeneModel
Retrieve Old GeneModel(2008)
Command
GeneModel
Name
(e.g. BGIBMGA000001-TA)     Protein Type
MEMBRANE
SOLUBLE
Length
-
bp
    Chromosome
chr1
chr2
chr3
chr4
chr5
chr6
chr7
chr8
chr9
chr10
chr11
chr12
chr13
chr14
chr15
chr16
chr17
chr18
chr19
chr20
chr21
chr22
chr23
chr24
chr25
chr26
chr27
chr28
unknown
    Scaffold ID
(e.g. Bm_scaf46)
BLAST result (UniRef)
GO ID
(e.g. GO:0030529)    GO Term
(e.g. receptor)
ID
(e.g. UniRef50_P91928)    evalue
1e-100
1e-30
1e-10
0.001
1
10
no hit
   Definition
(e.g. acetylcholine)
BLAST result (species)
Mosquito
Arabidopsis
Fruitfly
Bee
Human
Celegans
Nematostella
Rice
Tribolium
S.Pombe
> 10.0
> 0.0001
> 1e-10
< =1e-10
> 10.0
> 0.0001
> 1e-10
< =1e-10
> 10.0
> 0.0001
> 1e-10
< =1e-10
> 10.0
> 0.0001
> 1e-10
< =1e-10
> 10.0
> 0.0001
> 1e-10
< =1e-10
> 10.0
> 0.0001
> 1e-10
< =1e-10
> 10.0
> 0.0001
> 1e-10
< =1e-10
> 10.0
> 0.0001
> 1e-10
< =1e-10
> 10.0
> 0.0001
> 1e-10
< =1e-10
> 10.0
> 0.0001
> 1e-10
< =1e-10
Retreive EST
Command
EST
Name
(e.g. an--0004)   Length
-
bp
Chromosome
chr1
chr2
chr3
chr4
chr5
chr6
chr7
chr8
chr9
chr10
chr11
chr12
chr13
chr14
chr15
chr16
chr17
chr18
chr19
chr20
chr21
chr22
chr23
chr24
chr25
chr26
chr27
chr28
unknown
  Scaffold ID
(e.g. Bm_scaf46)    vs GeneModel
1e-100
1e-30
1e-10
> 1e-10
no hit
Library
All
A_BomoASG
A_BomoBR
A_BomoEE
A_BomoFB
A_BomoIG
A_BomoMG
A_BomoMSG
A_BomoN4EE
A_BomoOtmSK
A_BomoSK
BmN
Complete_Seq
F1mg
FJsb
FWD
J150
JFsb
MFB
N---
NRPG
NV02
NV06
NV12
Nnor
O_BomoASG
O_BomoBR
O_BomoEE
O_BomoFB
O_BomoIG
O_BomoMG
O_BomoMSG
O_BomoN4EE
O_BomoOtmSK
O_BomoSK
P5PG
an--
bmmt
bmnc
bmov
bmte
br--
brP-
brS-
caL-
ce--
ceN-
cesb
e40h
e96h
epV3
famL
fbS2
fbVf
fbVm
fbpv
fcP8
fcaL
fdpe
fe100
fe8d
fepM
ffbm
fmgV
fmxg
fner
fphe
fprw
ftes
fufe
fwgP
heS0
heS3
maV3
mg--
msgV
ovS0
ovS3
pg--
prgv
ps4M
psV3
tesS
tesV
vg4M
wdS0
wdS2
wdS3
wdV1
wdV3
wdV4
BLAST result (Library)
High Homology Libraries    Number Term
(e.g<4)    Names Term
(e.g. fcaL<20)
BLAST result (UniRef)
GO ID
(e.g. GO:0030529)    GO Term
(e.g. receptor)
ID
(e.g. UniRef50_P91928)    evalue
1e-100
1e-30
1e-10
0.001
1
10
no hit
   Definition
(e.g. acetylcholine)
BLAST result (species)
Mosquito
Arabidopsis
Fruitfly
Bee
Human
Celegans
Nematostella
Rice
Tribolium
S.Pombe
> 10.0
> 0.0001
> 1e-10
< =1e-10
> 10.0
> 0.0001
> 1e-10
< =1e-10
> 10.0
> 0.0001
> 1e-10
< =1e-10
> 10.0
> 0.0001
> 1e-10
< =1e-10
> 10.0
> 0.0001
> 1e-10
< =1e-10
> 10.0
> 0.0001
> 1e-10
< =1e-10
> 10.0
> 0.0001
> 1e-10
< =1e-10
> 10.0
> 0.0001
> 1e-10
< =1e-10
> 10.0
> 0.0001
> 1e-10
< =1e-10
> 10.0
> 0.0001
> 1e-10
< =1e-10
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