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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
61 O_BomoIG100055_complete:A_BomoIG_DN31560_c1_g7_i1
612bp
 NCK-interacting_protein_with_SH3_domain_isoform_X1_[Bombyx_mori]
GO:0005634 C nucleus
GO:0008180 C COP9 signalosome
GO:0010976 P positive regulation of neuron projection development
GO:0017124 F SH3 domain binding
62 O_BomoIG100056_complete:A_BomoIG_DN31560_c1_g7_i1
107bp
63 O_BomoIG100057_complete:A_BomoIG_DN31560_c1_g2_i4
287bp
 helicase_SKI2W_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003724 F RNA helicase activity
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006401 P RNA catabolic process
GO:0016787 F hydrolase activity
GO:0055087 C Ski complex
64 O_BomoIG100058_5prime_partial:A_BomoIG_DN31560_c1_g2_i4
103bp
65 O_BomoIG100059_complete:A_BomoIG_DN31560_c1_g2_i5
1168bp
 helicase_SKI2W_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003724 F RNA helicase activity
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006401 P RNA catabolic process
GO:0016787 F hydrolase activity
GO:0055087 C Ski complex
66 O_BomoIG10005_complete:A_BomoIG_DN33712_c4_g3_i1
272bp
 Uncharacterized_protein_OBRU01_23417,_partial_[Operophtera_brumata]
67 O_BomoIG100060_complete:A_BomoIG_DN31560_c1_g2_i5
125bp
 hypothetical_protein_BFL35_11215_[Clavibacter_michiganensis]
68 O_BomoIG100061_complete:A_BomoIG_DN31560_c1_g2_i5
114bp
 hypothetical_protein_ATCV1_z599L_[Acanthocystis_turfacea_Chlorella_virus_1]
69 O_BomoIG100062_complete:A_BomoIG_DN31560_c1_g3_i3
148bp
 transmembrane_protein_18_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016477 P cell migration
GO:0031965 C nuclear membrane
70 O_BomoIG100063_complete:A_BomoIG_DN31560_c1_g3_i3
114bp
71 O_BomoIG100064_complete:A_BomoIG_DN31560_c1_g7_i2
495bp
 NCK-interacting_protein_with_SH3_domain_isoform_X2_[Bombyx_mori]
GO:0005634 C nucleus
GO:0008180 C COP9 signalosome
GO:0010976 P positive regulation of neuron projection development
GO:0017124 F SH3 domain binding
72 O_BomoIG100065_complete:A_BomoIG_DN31560_c1_g7_i2
107bp
73 O_BomoIG100066_3prime_partial:A_BomoIG_DN31560_c1_g7_i4
507bp
 NCK-interacting_protein_with_SH3_domain_isoform_X2_[Bombyx_mori]
GO:0005634 C nucleus
GO:0008180 C COP9 signalosome
GO:0010976 P positive regulation of neuron projection development
GO:0017124 F SH3 domain binding
74 O_BomoIG100067_complete:A_BomoIG_DN31560_c1_g7_i4
107bp
75 O_BomoIG100068_complete:A_BomoIG_DN31560_c1_g2_i6
170bp
 helicase_SKI2W_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003724 F RNA helicase activity
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006401 P RNA catabolic process
GO:0016787 F hydrolase activity
GO:0055087 C Ski complex
76 O_BomoIG100069_3prime_partial:A_BomoIG_DN31534_c3_g2_i1
325bp
 formin-like_protein_5_isoform_X2_[Bombyx_mori]
77 O_BomoIG10006_internal:A_BomoIG_DN33712_c4_g1_i2
112bp
78 O_BomoIG100070_complete:A_BomoIG_DN31534_c3_g3_i1
406bp
 transcription_factor_Sp9_isoform_X2_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0030326 P embryonic limb morphogenesis
GO:0035118 P embryonic pectoral fin morphogenesis
GO:0045743 P positive regulation of fibroblast growth factor receptor signaling pathway
GO:0046872 F metal ion binding
79 O_BomoIG100071_complete:A_BomoIG_DN31534_c3_g5_i1
272bp
 formin-like_protein_5_isoform_X2_[Bombyx_mori]
80 O_BomoIG100072_complete:A_BomoIG_DN31534_c3_g5_i2
660bp
 formin-like_protein_5_isoform_X1_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0044822 F RNA binding
81 O_BomoIG100073_complete:A_BomoIG_DN31534_c3_g5_i3
278bp
 formin-like_protein_5_isoform_X1_[Bombyx_mori]
82 O_BomoIG100074_complete:A_BomoIG_DN31534_c3_g5_i4
180bp
 formin-like_protein_5_isoform_X1_[Bombyx_mori]
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0044822 F RNA binding
83 O_BomoIG100075_complete:A_BomoIG_DN31534_c3_g5_i5
142bp
 formin-like_protein_5_isoform_X2_[Bombyx_mori]
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0044822 F RNA binding
84 O_BomoIG100076_complete:A_BomoIG_DN31534_c3_g3_i2
402bp
 transcription_factor_Sp9_isoform_X4_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0030326 P embryonic limb morphogenesis
GO:0035118 P embryonic pectoral fin morphogenesis
GO:0045743 P positive regulation of fibroblast growth factor receptor signaling pathway
GO:0046872 F metal ion binding
85 O_BomoIG100077_3prime_partial:A_BomoIG_DN31534_c3_g3_i3
159bp
 transcription_factor_Sp9_isoform_X5_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0030326 P embryonic limb morphogenesis
GO:0046872 F metal ion binding
86 O_BomoIG100078_complete:A_BomoIG_DN31534_c3_g5_i6
140bp
 formin-like_protein_5_isoform_X1_[Bombyx_mori]
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0044822 F RNA binding
87 O_BomoIG100079_complete:A_BomoIG_DN31534_c3_g5_i7
182bp
 formin-like_protein_5_isoform_X2_[Bombyx_mori]
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0044822 F RNA binding
88 O_BomoIG10007_5prime_partial:A_BomoIG_DN33712_c4_g3_i5
151bp
89 O_BomoIG100080_3prime_partial:A_BomoIG_DN31534_c3_g5_i8
631bp
 formin-like_protein_5_isoform_X1_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0044822 F RNA binding
90 O_BomoIG100081_complete:A_BomoIG_DN31534_c3_g3_i5
395bp
 transcription_factor_Sp9_isoform_X5_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0030326 P embryonic limb morphogenesis
GO:0035118 P embryonic pectoral fin morphogenesis
GO:0045743 P positive regulation of fibroblast growth factor receptor signaling pathway
GO:0046872 F metal ion binding
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