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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
121 O_BomoMSG10109_5prime_partial:A_BomoMSG_c22464_g1_i1
180bp
122 O_BomoMSG1010_internal:A_BomoMSG_c4693_g1_i1
160bp
 FERM_domain-containing_protein_5_isoform_X2_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0008092 F cytoskeletal protein binding
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0019898 C extrinsic component of membrane
123 O_BomoMSG10110_complete:A_BomoMSG_c22464_g1_i1
131bp
124 O_BomoMSG10111_complete:A_BomoMSG_c22465_g1_i1
533bp
 peroxisomal_targeting_signal_1_receptor_[Bombyx_mori]
GO:0005052 F peroxisome matrix targeting signal-1 binding
GO:0005622 C intracellular anatomical structure
GO:0005737 C cytoplasm
GO:0005777 C peroxisome
GO:0005778 C peroxisomal membrane
GO:0005782 C peroxisomal matrix
GO:0005829 C cytosol
GO:0006625 P protein targeting to peroxisome
GO:0006810 P transport
GO:0008022 F protein C-terminus binding
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016561 P protein import into peroxisome matrix, translocation
GO:0051262 P protein tetramerization
125 O_BomoMSG10112_complete:A_BomoMSG_c22465_g1_i2
533bp
 peroxisomal_targeting_signal_1_receptor_[Bombyx_mori]
GO:0005052 F peroxisome matrix targeting signal-1 binding
GO:0005622 C intracellular anatomical structure
GO:0005737 C cytoplasm
GO:0005777 C peroxisome
GO:0005778 C peroxisomal membrane
GO:0005782 C peroxisomal matrix
GO:0005829 C cytosol
GO:0006625 P protein targeting to peroxisome
GO:0006810 P transport
GO:0008022 F protein C-terminus binding
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016561 P protein import into peroxisome matrix, translocation
GO:0051262 P protein tetramerization
126 O_BomoMSG10113_complete:A_BomoMSG_c22465_g1_i3
533bp
 peroxisomal_targeting_signal_1_receptor_[Bombyx_mori]
GO:0005052 F peroxisome matrix targeting signal-1 binding
GO:0005622 C intracellular anatomical structure
GO:0005737 C cytoplasm
GO:0005777 C peroxisome
GO:0005778 C peroxisomal membrane
GO:0005782 C peroxisomal matrix
GO:0005829 C cytosol
GO:0006625 P protein targeting to peroxisome
GO:0006810 P transport
GO:0008022 F protein C-terminus binding
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016561 P protein import into peroxisome matrix, translocation
GO:0051262 P protein tetramerization
127 O_BomoMSG10114_complete:A_BomoMSG_c22467_g1_i1
241bp
 protein_CREG1_[Bombyx_mori]
GO:0003714 F transcription corepressor activity
GO:0005576 C extracellular region
GO:0005615 C extracellular space
GO:0005667 C transcription regulator complex
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007275 P multicellular organism development
GO:0008134 F transcription factor binding
GO:0008283 P cell population proliferation
GO:0010181 F FMN binding
GO:0016491 F oxidoreductase activity
GO:0040008 P regulation of growth
GO:0055114 P obsolete oxidation-reduction process
GO:0070062 C extracellular exosome
GO:1903507 P negative regulation of nucleic acid-templated transcription
128 O_BomoMSG10115_5prime_partial:A_BomoMSG_c22467_g1_i2
171bp
 protein_CREG1_[Bombyx_mori]
GO:0003714 F transcription corepressor activity
GO:0005576 C extracellular region
GO:0005615 C extracellular space
GO:0005667 C transcription regulator complex
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007275 P multicellular organism development
GO:0008134 F transcription factor binding
GO:0008283 P cell population proliferation
GO:0010181 F FMN binding
GO:0016491 F oxidoreductase activity
GO:0040008 P regulation of growth
GO:0055114 P obsolete oxidation-reduction process
GO:0070062 C extracellular exosome
GO:1903507 P negative regulation of nucleic acid-templated transcription
129 O_BomoMSG10116_complete:A_BomoMSG_c22470_g1_i1
693bp
 potassium/sodium_hyperpolarization-activated_cyclic_nucleotide-gated_channel_2_isoform_X8_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0002027 P regulation of heart rate
GO:0003254 P regulation of membrane depolarization
GO:0005216 F ion channel activity
GO:0005222 F intracellular cAMP-activated cation channel activity
GO:0005244 F voltage-gated ion channel activity
GO:0005248 F voltage-gated sodium channel activity
GO:0005249 F voltage-gated potassium channel activity
GO:0005267 F potassium channel activity
GO:0005272 F sodium channel activity
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006812 P cation transport
GO:0006813 P potassium ion transport
GO:0006814 P sodium ion transport
GO:0006936 P muscle contraction
GO:0008015 P blood circulation
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030552 F cAMP binding
GO:0031226 C intrinsic component of plasma membrane
GO:0034765 P regulation of ion transmembrane transport
GO:0035725 P sodium ion transmembrane transport
GO:0042391 P regulation of membrane potential
GO:0042802 F identical protein binding
GO:0048471 C perinuclear region of cytoplasm
GO:0055085 P transmembrane transport
GO:0055117 P regulation of cardiac muscle contraction
GO:0060078 P regulation of postsynaptic membrane potential
GO:0071320 P cellular response to cAMP
GO:0071321 P cellular response to cGMP
GO:0071805 P potassium ion transmembrane transport
GO:0086015 P SA node cell action potential
GO:0086091 P regulation of heart rate by cardiac conduction
130 O_BomoMSG10117_complete:A_BomoMSG_c22470_g1_i1
127bp
 PREDICTED:_uncharacterized_protein_LOC108159216_isoform_X13_[Drosophila_miranda]
131 O_BomoMSG10118_complete:A_BomoMSG_c22470_g1_i1
122bp
132 O_BomoMSG10119_complete:A_BomoMSG_c22470_g1_i1
112bp
133 O_BomoMSG1011_internal:A_BomoMSG_c4693_g1_i2
212bp
 FERM_domain-containing_protein_5_isoform_X2_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005515 F protein binding
GO:0005575 C cellular_component
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0008092 F cytoskeletal protein binding
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0019898 C extrinsic component of membrane
134 O_BomoMSG10120_complete:A_BomoMSG_c22471_g1_i1
170bp
 PREDICTED:_uncharacterized_protein_LOC106103926_[Papilio_polytes]
GO:0003674 F molecular_function
GO:0008150 P biological_process
GO:0016197 P endosomal transport
GO:0031083 C BLOC-1 complex
135 O_BomoMSG10121_3prime_partial:A_BomoMSG_c22472_g1_i1
575bp
 exostosin-3_isoform_X2_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0001888 F glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005794 C Golgi apparatus
GO:0006024 P glycosaminoglycan biosynthetic process
GO:0006044 P N-acetylglucosamine metabolic process
GO:0007224 P smoothened signaling pathway
GO:0007275 P multicellular organism development
GO:0007367 P segment polarity determination
GO:0008101 P BMP signaling pathway
GO:0008375 F acetylglucosaminyltransferase activity
GO:0015012 P heparan sulfate proteoglycan biosynthetic process
GO:0015014 P heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016055 P Wnt signaling pathway
GO:0016740 F transferase activity
GO:0016757 F glycosyltransferase activity
GO:0030201 P heparan sulfate proteoglycan metabolic process
GO:0030210 P heparin biosynthetic process
GO:0042328 F heparan sulfate N-acetylglucosaminyltransferase activity
GO:0046872 F metal ion binding
136 O_BomoMSG10122_5prime_partial:A_BomoMSG_c22473_g1_i1
145bp
 putative_Copia_protein_[Danaus_plexippus_plexippus]
GO:0003676 F nucleic acid binding
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
137 O_BomoMSG10123_internal:A_BomoMSG_c22474_g1_i2
152bp
 sialin_[Bombyx_mori]
GO:0005351 F carbohydrate:proton symporter activity
GO:0005737 C cytoplasm
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006820 P anion transport
GO:0006865 P amino acid transport
GO:0015136 F sialic acid transmembrane transporter activity
GO:0015293 F symporter activity
GO:0015538 F sialic acid:proton symporter activity
GO:0015739 P sialic acid transport
GO:0015992 P proton transmembrane transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016023 C cytoplasmic vesicle
GO:0030054 C cell junction
GO:0030672 C synaptic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0045202 C synapse
GO:0055085 P transmembrane transport
GO:1905039 P carboxylic acid transmembrane transport
138 O_BomoMSG10124_internal:A_BomoMSG_c22475_g1_i1
208bp
 uncharacterized_protein_LOC101740831_isoform_X2_[Bombyx_mori]
139 O_BomoMSG10125_5prime_partial:A_BomoMSG_c22475_g1_i1
136bp
140 O_BomoMSG10126_internal:A_BomoMSG_c22476_g1_i1
99bp
 Gag-like_protein_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0003676 F nucleic acid binding
GO:0006313 P transposition, DNA-mediated
GO:0008270 F zinc ion binding
GO:0019012 C virion component
GO:0019013 C viral nucleocapsid
GO:0046872 F metal ion binding
141 O_BomoMSG10127_internal:A_BomoMSG_c22476_g1_i1
99bp
142 O_BomoMSG10128_internal:A_BomoMSG_c22476_g1_i1
99bp
143 O_BomoMSG10129_complete:A_BomoMSG_c22477_g1_i1
170bp
 uncharacterized_protein_LOC101736829_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0005739 C mitochondrion
GO:0008150 P biological_process
GO:0043280 P positive regulation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0090200 P positive regulation of release of cytochrome c from mitochondria
GO:0097193 P intrinsic apoptotic signaling pathway
144 O_BomoMSG1012_internal:A_BomoMSG_c4702_g1_i1
105bp
 dicer-2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0004386 F helicase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004525 F ribonuclease III activity
GO:0004530 F deoxyribonuclease I activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006309 P apoptotic DNA fragmentation
GO:0006396 P RNA processing
GO:0016442 C RISC complex
GO:0016787 F hydrolase activity
GO:0016891 F endoribonuclease activity, producing 5'-phosphomonoesters
GO:0021591 P ventricular system development
GO:0030422 P production of siRNA involved in RNA interference
GO:0030423 P targeting of mRNA for destruction involved in RNA interference
GO:0031047 P gene silencing by RNA
GO:0031054 P pre-miRNA processing
GO:0035195 P gene silencing by miRNA
GO:0035196 P production of miRNAs involved in gene silencing by miRNA
GO:0035279 P miRNA-mediated gene silencing by mRNA destabilization
GO:0046872 F metal ion binding
GO:0050767 P regulation of neurogenesis
GO:0070578 C RISC-loading complex
GO:0070883 F pre-miRNA binding
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
145 O_BomoMSG10130_3prime_partial:A_BomoMSG_c22481_g1_i1
248bp
 uncharacterized_protein_LOC101742002_isoform_X2_[Bombyx_mori]
146 O_BomoMSG10131_internal:A_BomoMSG_c22483_g1_i1
332bp
 LOW_QUALITY_PROTEIN:_notch-like_protein_isoform_X1_[Bombyx_mori]
GO:0005509 F calcium ion binding
GO:0005576 C extracellular region
147 O_BomoMSG10132_complete:A_BomoMSG_c22483_g1_i1
107bp
148 O_BomoMSG10133_internal:A_BomoMSG_c22483_g1_i2
306bp
 LOW_QUALITY_PROTEIN:_notch-like_protein_isoform_X1_[Bombyx_mori]
149 O_BomoMSG10134_complete:A_BomoMSG_c22483_g1_i2
107bp
150 O_BomoMSG10135_internal:A_BomoMSG_c22483_g1_i3
391bp
 LOW_QUALITY_PROTEIN:_notch-like_protein_isoform_X1_[Bombyx_mori]
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