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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

next from show/26102
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
1 O_TrvaFAMAMG10000_complete:A_TrvaFAMAMG_TR9823c0_g1_i2
355bp
PREDICTED:_uncharacterized_protein_LOC106652810_[Trichogramma_pretiosum]
2 O_TrvaFAMAMG10001_3prime_partial:A_TrvaFAMAMG_TR9823c0_g1_i2
331bp
gag-pol_fusion_protein_[Lasius_niger]
GO:0003676 F nucleic acid binding
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
3 O_TrvaFAMAMG10004_complete:A_TrvaFAMAMG_TR9823c0_g1_i3
361bp
retroelement_polyprotein_[Lasius_niger]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0003824 F catalytic activity
GO:0003887 F DNA-directed DNA polymerase activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005575 C cellular_component
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006310 P DNA recombination
GO:0006508 P proteolysis
GO:0008152 P metabolic process
GO:0008233 F peptidase activity
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0071897 P DNA biosynthetic process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
4 O_TrvaFAMAMG10005_5prime_partial:A_TrvaFAMAMG_TR9823c0_g1_i3
240bp
retroelement_polyprotein_[Lasius_niger]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0003824 F catalytic activity
GO:0003887 F DNA-directed DNA polymerase activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005575 C cellular_component
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006310 P DNA recombination
GO:0006508 P proteolysis
GO:0008152 P metabolic process
GO:0008233 F peptidase activity
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0071897 P DNA biosynthetic process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
5 O_TrvaFAMAMG10007_5prime_partial:A_TrvaFAMAMG_TR9823c0_g1_i4
358bp
retroelement_polyprotein_[Lasius_niger]
GO:0000166 F nucleotide binding
GO:0000943 C retrotransposon nucleocapsid
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0003824 F catalytic activity
GO:0003887 F DNA-directed DNA polymerase activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004523 F RNA-DNA hybrid ribonuclease activity
GO:0004540 F ribonuclease activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006310 P DNA recombination
GO:0006508 P proteolysis
GO:0008152 P metabolic process
GO:0008233 F peptidase activity
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0019076 P viral release from host cell
GO:0032197 P transposition, RNA-mediated
GO:0046872 F metal ion binding
GO:0071897 P DNA biosynthetic process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090501 P RNA phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
6 O_TrvaFAMAMG10008_complete:A_TrvaFAMAMG_TR9823c0_g1_i4
355bp
PREDICTED:_uncharacterized_protein_LOC106652810_[Trichogramma_pretiosum]
7 O_TrvaFAMAMG10009_3prime_partial:A_TrvaFAMAMG_TR9823c0_g1_i4
331bp
gag-pol_fusion_protein_[Lasius_niger]
GO:0003676 F nucleic acid binding
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
8 O_TrvaFAMAMG10010_complete:A_TrvaFAMAMG_TR9823c0_g1_i4
281bp
PREDICTED:_uncharacterized_protein_LOC105200965_[Solenopsis_invicta]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0003824 F catalytic activity
GO:0003887 F DNA-directed DNA polymerase activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005575 C cellular_component
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006310 P DNA recombination
GO:0006508 P proteolysis
GO:0008152 P metabolic process
GO:0008233 F peptidase activity
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0071897 P DNA biosynthetic process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
9 O_TrvaFAMAMG10013_complete:A_TrvaFAMAMG_TR9823c0_g1_i5
361bp
retroelement_polyprotein_[Lasius_niger]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0003824 F catalytic activity
GO:0003887 F DNA-directed DNA polymerase activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005575 C cellular_component
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006310 P DNA recombination
GO:0006508 P proteolysis
GO:0008152 P metabolic process
GO:0008233 F peptidase activity
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0071897 P DNA biosynthetic process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
10 O_TrvaFAMAMG10014_5prime_partial:A_TrvaFAMAMG_TR9823c0_g1_i5
240bp
retroelement_polyprotein_[Lasius_niger]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0003824 F catalytic activity
GO:0003887 F DNA-directed DNA polymerase activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005575 C cellular_component
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006310 P DNA recombination
GO:0006508 P proteolysis
GO:0008152 P metabolic process
GO:0008233 F peptidase activity
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0071897 P DNA biosynthetic process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
11 O_TrvaFAMAMG10016_5prime_partial:A_TrvaFAMAMG_TR9824c0_g1_i1
650bp
PREDICTED:_uncharacterized_protein_K02A2.6-like_[Papilio_xuthus]
GO:0003676 F nucleic acid binding
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005634 C nucleus
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006313 P transposition, DNA-mediated
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
12 O_TrvaFAMAMG10017_complete:A_TrvaFAMAMG_TR9824c0_g1_i1
386bp
PREDICTED:_uncharacterized_protein_K02A2.6-like_[Papilio_xuthus]
GO:0003676 F nucleic acid binding
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0046872 F metal ion binding
13 O_TrvaFAMAMG10018_3prime_partial:A_TrvaFAMAMG_TR9824c0_g1_i1
374bp
PREDICTED:_uncharacterized_protein_K02A2.6-like_[Amyelois_transitella]
14 O_TrvaFAMAMG1001_5prime_partial:A_TrvaFAMAMG_TR1630c0_g1_i1
366bp
PREDICTED:_raf_kinase,_effector_of_Ras_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0002168 P instar larval development
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005057 F obsolete signal transducer activity, downstream of receptor
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0006468 P protein phosphorylation
GO:0007165 P signal transduction
GO:0007173 P epidermal growth factor receptor signaling pathway
GO:0007283 P spermatogenesis
GO:0007298 P border follicle cell migration
GO:0007362 P terminal region determination
GO:0007369 P gastrulation
GO:0007428 P primary branching, open tracheal system
GO:0007472 P wing disc morphogenesis
GO:0007476 P imaginal disc-derived wing morphogenesis
GO:0007552 P metamorphosis
GO:0008069 P dorsal/ventral axis specification, ovarian follicular epithelium
GO:0008284 P positive regulation of cell population proliferation
GO:0008293 P torso signaling pathway
GO:0008586 P imaginal disc-derived wing vein morphogenesis
GO:0009267 P cellular response to starvation
GO:0016242 P negative regulation of macroautophagy
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0030097 P hemopoiesis
GO:0030641 P regulation of cellular pH
GO:0035171 P lamellocyte differentiation
GO:0035309 P wing and notum subfield formation
GO:0035556 P intracellular signal transduction
GO:0040014 P regulation of multicellular organism growth
GO:0042386 P hemocyte differentiation
GO:0046534 P positive regulation of photoreceptor cell differentiation
GO:0046579 P positive regulation of Ras protein signal transduction
GO:0046777 P protein autophosphorylation
GO:0046872 F metal ion binding
GO:0051726 P regulation of cell cycle
GO:0070374 P positive regulation of ERK1 and ERK2 cascade
GO:2001234 P negative regulation of apoptotic signaling pathway
15 O_TrvaFAMAMG10020_5prime_partial:A_TrvaFAMAMG_TR9824c0_g1_i2
971bp
PREDICTED:_uncharacterized_protein_K02A2.6-like_[Papilio_xuthus]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0003824 F catalytic activity
GO:0003887 F DNA-directed DNA polymerase activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005575 C cellular_component
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006310 P DNA recombination
GO:0006508 P proteolysis
GO:0008152 P metabolic process
GO:0008233 F peptidase activity
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0071897 P DNA biosynthetic process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
16 O_TrvaFAMAMG10021_internal:A_TrvaFAMAMG_TR9825c0_g1_i1
410bp
PREDICTED:_nesprin-1-like_isoform_X1_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005515 F protein binding
GO:0005521 F lamin binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005640 C nuclear outer membrane
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005856 C cytoskeleton
GO:0006997 P nucleus organization
GO:0007030 P Golgi organization
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030017 C sarcomere
GO:0031965 C nuclear membrane
GO:0034993 C meiotic nuclear membrane microtubule tethering complex
GO:0040023 P nuclear migration
GO:0042692 P muscle cell differentiation
GO:0042802 F identical protein binding
GO:0042803 F protein homodimerization activity
GO:0044822 F RNA binding
GO:0045211 C postsynaptic membrane
GO:0051015 F actin filament binding
GO:0090286 P obsolete cytoskeletal anchoring at nuclear membrane
GO:0090292 P nuclear matrix anchoring at nuclear membrane
17 O_TrvaFAMAMG10022_internal:A_TrvaFAMAMG_TR9825c0_g2_i1
457bp
PREDICTED:_nesprin-1-like_isoform_X2_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005515 F protein binding
GO:0005521 F lamin binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005640 C nuclear outer membrane
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005856 C cytoskeleton
GO:0006997 P nucleus organization
GO:0007030 P Golgi organization
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030017 C sarcomere
GO:0031965 C nuclear membrane
GO:0034993 C meiotic nuclear membrane microtubule tethering complex
GO:0040023 P nuclear migration
GO:0042692 P muscle cell differentiation
GO:0042802 F identical protein binding
GO:0042803 F protein homodimerization activity
GO:0044822 F RNA binding
GO:0045211 C postsynaptic membrane
GO:0051015 F actin filament binding
GO:0090286 P obsolete cytoskeletal anchoring at nuclear membrane
GO:0090292 P nuclear matrix anchoring at nuclear membrane
18 O_TrvaFAMAMG10024_3prime_partial:A_TrvaFAMAMG_TR9825c1_g1_i1
4974bp
PREDICTED:_nesprin-1_isoform_X1_[Amyelois_transitella]
GO:0003779 F actin binding
GO:0005515 F protein binding
GO:0005521 F lamin binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005640 C nuclear outer membrane
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005856 C cytoskeleton
GO:0007030 P Golgi organization
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030017 C sarcomere
GO:0031965 C nuclear membrane
GO:0034993 C meiotic nuclear membrane microtubule tethering complex
GO:0040023 P nuclear migration
GO:0042692 P muscle cell differentiation
GO:0042802 F identical protein binding
GO:0042803 F protein homodimerization activity
GO:0044822 F RNA binding
GO:0045211 C postsynaptic membrane
GO:0051015 F actin filament binding
GO:0090286 P obsolete cytoskeletal anchoring at nuclear membrane
GO:0090292 P nuclear matrix anchoring at nuclear membrane
19 O_TrvaFAMAMG10025_complete:A_TrvaFAMAMG_TR9825c1_g1_i1
1069bp
PREDICTED:_nesprin-1-like_isoform_X1_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005515 F protein binding
GO:0005521 F lamin binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005640 C nuclear outer membrane
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005856 C cytoskeleton
GO:0006997 P nucleus organization
GO:0007030 P Golgi organization
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030017 C sarcomere
GO:0031965 C nuclear membrane
GO:0034993 C meiotic nuclear membrane microtubule tethering complex
GO:0040023 P nuclear migration
GO:0042692 P muscle cell differentiation
GO:0042802 F identical protein binding
GO:0042803 F protein homodimerization activity
GO:0044822 F RNA binding
GO:0045211 C postsynaptic membrane
GO:0051015 F actin filament binding
GO:0090286 P obsolete cytoskeletal anchoring at nuclear membrane
GO:0090292 P nuclear matrix anchoring at nuclear membrane
20 O_TrvaFAMAMG1002_5prime_partial:A_TrvaFAMAMG_TR1630c0_g2_i1
744bp
PREDICTED:_raf_kinase,_effector_of_Ras_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0002168 P instar larval development
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005057 F obsolete signal transducer activity, downstream of receptor
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0006468 P protein phosphorylation
GO:0007165 P signal transduction
GO:0007173 P epidermal growth factor receptor signaling pathway
GO:0007283 P spermatogenesis
GO:0007298 P border follicle cell migration
GO:0007362 P terminal region determination
GO:0007369 P gastrulation
GO:0007428 P primary branching, open tracheal system
GO:0007472 P wing disc morphogenesis
GO:0007476 P imaginal disc-derived wing morphogenesis
GO:0007552 P metamorphosis
GO:0008069 P dorsal/ventral axis specification, ovarian follicular epithelium
GO:0008284 P positive regulation of cell population proliferation
GO:0008293 P torso signaling pathway
GO:0008586 P imaginal disc-derived wing vein morphogenesis
GO:0009267 P cellular response to starvation
GO:0016242 P negative regulation of macroautophagy
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0030097 P hemopoiesis
GO:0030641 P regulation of cellular pH
GO:0035171 P lamellocyte differentiation
GO:0035309 P wing and notum subfield formation
GO:0035556 P intracellular signal transduction
GO:0040014 P regulation of multicellular organism growth
GO:0042386 P hemocyte differentiation
GO:0046534 P positive regulation of photoreceptor cell differentiation
GO:0046579 P positive regulation of Ras protein signal transduction
GO:0046777 P protein autophosphorylation
GO:0046872 F metal ion binding
GO:0051726 P regulation of cell cycle
GO:0070374 P positive regulation of ERK1 and ERK2 cascade
GO:2001234 P negative regulation of apoptotic signaling pathway
21 O_TrvaFAMAMG10031_internal:A_TrvaFAMAMG_TR9825c1_g2_i1
561bp
PREDICTED:_nesprin-1-like_[Bombyx_mori]
22 O_TrvaFAMAMG10033_3prime_partial:A_TrvaFAMAMG_TR9825c1_g3_i1
1012bp
PREDICTED:_nesprin-1-like_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005515 F protein binding
GO:0005521 F lamin binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005640 C nuclear outer membrane
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005856 C cytoskeleton
GO:0006997 P nucleus organization
GO:0007030 P Golgi organization
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030017 C sarcomere
GO:0031965 C nuclear membrane
GO:0034993 C meiotic nuclear membrane microtubule tethering complex
GO:0040023 P nuclear migration
GO:0042692 P muscle cell differentiation
GO:0042802 F identical protein binding
GO:0042803 F protein homodimerization activity
GO:0044822 F RNA binding
GO:0045211 C postsynaptic membrane
GO:0051015 F actin filament binding
GO:0090286 P obsolete cytoskeletal anchoring at nuclear membrane
GO:0090292 P nuclear matrix anchoring at nuclear membrane
23 O_TrvaFAMAMG10037_5prime_partial:A_TrvaFAMAMG_TR9825c1_g4_i1
513bp
PREDICTED:_nesprin-1-like_[Bombyx_mori]
24 O_TrvaFAMAMG10039_complete:A_TrvaFAMAMG_TR9826c0_g1_i1
309bp
PREDICTED:_uncharacterized_protein_LOC100492546_isoform_X2_[Xenopus_tropicalis]
25 O_TrvaFAMAMG10040_complete:A_TrvaFAMAMG_TR9826c0_g1_i1
179bp
PREDICTED:_uncharacterized_protein_LOC105679145_[Linepithema_humile]
26 O_TrvaFAMAMG10042_complete:A_TrvaFAMAMG_TR9826c0_g1_i2
247bp
PREDICTED:_uncharacterized_protein_LOC105679145_[Linepithema_humile]
27 O_TrvaFAMAMG10043_complete:A_TrvaFAMAMG_TR9826c0_g1_i3
309bp
PREDICTED:_uncharacterized_protein_LOC100492546_isoform_X2_[Xenopus_tropicalis]
28 O_TrvaFAMAMG10044_complete:A_TrvaFAMAMG_TR9826c0_g1_i3
247bp
PREDICTED:_uncharacterized_protein_LOC105679145_[Linepithema_humile]
29 O_TrvaFAMAMG10045_complete:A_TrvaFAMAMG_TR9826c0_g1_i4
309bp
PREDICTED:_uncharacterized_protein_LOC100492546_isoform_X2_[Xenopus_tropicalis]
30 O_TrvaFAMAMG10046_complete:A_TrvaFAMAMG_TR9826c0_g1_i4
247bp
PREDICTED:_uncharacterized_protein_LOC105679145_[Linepithema_humile]
next from show/26102

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