Search ORF from Assembled RNA-Seq

No.	Name Length	Chromosome No./Scaffold Id Scaffold Length	BLAST (vs nr)	Gene ontology
1	O_BomoSK10000_complete:A_BomoSK_comp12004_c0_seq1 107bp	Bomo_Chr1
2	O_BomoSK10001_complete:A_BomoSK_comp12004_c0_seq1 102bp	Bomo_Chr1	Protein_NLRC5_[Larimichthys_crocea]
3	O_BomoSK10002_3prime_partial:A_BomoSK_comp12004_c0_seq2 512bp	Bomo_Chr1	PREDICTED:_insulin-like_growth_factor_2_mRNA-binding_protein_1_isoform_X1_[Bombyx_mori]	GO:0000166 F nucleotide binding GO:0003676 F nucleic acid binding GO:0003723 F RNA binding GO:0003729 F mRNA binding GO:0003730 F mRNA 3'-UTR binding GO:0005634 C nucleus GO:0005737 C cytoplasm GO:0006417 P regulation of translation GO:0006810 P transport GO:0010494 C cytoplasmic stress granule GO:0010610 P regulation of mRNA stability involved in response to stress GO:0010976 P positive regulation of neuron projection development GO:0017148 P negative regulation of translation GO:0022013 P pallium cell proliferation in forebrain GO:0030027 C lamellipodium GO:0030175 C filopodium GO:0030426 C growth cone GO:0030529 C ribonucleoprotein complex GO:0042995 C cell projection GO:0044822 F RNA binding GO:0045182 F translation regulator activity GO:0048027 F mRNA 5'-UTR binding GO:0048471 C perinuclear region of cytoplasm GO:0051028 P mRNA transport GO:0070934 P CRD-mediated mRNA stabilization GO:0070937 C CRD-mediated mRNA stability complex GO:0097150 P neuronal stem cell population maintenance
4	O_BomoSK10003_complete:A_BomoSK_comp12004_c0_seq2 172bp	Bomo_Chr1	hydroxyacylglutathione_hydrolase_[Stenotrophomonas_maltophilia]
5	O_BomoSK10004_complete:A_BomoSK_comp12004_c0_seq2 161bp	Bomo_Chr1
6	O_BomoSK10005_complete:A_BomoSK_comp12004_c0_seq2 107bp	Bomo_Chr1
7	O_BomoSK10006_complete:A_BomoSK_comp12004_c0_seq2 102bp	Bomo_Chr1	Protein_NLRC5_[Larimichthys_crocea]
8	O_BomoSK10007_complete:A_BomoSK_comp12005_c0_seq1 226bp	Bomo_Chr25	PREDICTED:_uncharacterized_protein_C15orf41_homolog_[Bombyx_mori]
9	O_BomoSK10008_5prime_partial:A_BomoSK_comp12006_c0_seq1 556bp	Bomo_Chr4	hypothetical_protein_KGM_02132_[Danaus_plexippus]	GO:0004175 F endopeptidase activity GO:0005515 F protein binding GO:0005634 C nucleus GO:0005654 C nucleoplasm GO:0005737 C cytoplasm GO:0005925 C focal adhesion GO:0006508 P proteolysis GO:0006919 P activation of cysteine-type endopeptidase activity involved in apoptotic process GO:0008233 F peptidase activity GO:0008234 F cysteine-type peptidase activity GO:0010724 P regulation of definitive erythrocyte differentiation GO:0016787 F hydrolase activity GO:0016925 P protein sumoylation GO:0016926 P protein desumoylation GO:0016929 F SUMO-specific protease activity GO:0031965 C nuclear membrane GO:0032435 P negative regulation of proteasomal ubiquitin-dependent protein catabolic process GO:0045944 P positive regulation of transcription by RNA polymerase II GO:0070139 F SUMO-specific endopeptidase activity GO:0097190 P apoptotic signaling pathway
10	O_BomoSK10009_complete:A_BomoSK_comp12006_c0_seq1 219bp	Bomo_Chr4	lethal(3)malignant_brain_tumor_[Culex_quinquefasciatus]
11	O_BomoSK1000_complete:A_BomoSK_comp3780_c0_seq1 255bp	Bomo_Chr23	PREDICTED:_dehydrodolichyl_diphosphate_syntase_complex_subunit_Nus1_[Amyelois_transitella]	GO:0001525 P angiogenesis GO:0004659 F prenyltransferase activity GO:0005783 C endoplasmic reticulum GO:0005789 C endoplasmic reticulum membrane GO:0006486 P protein glycosylation GO:0007275 P multicellular organism development GO:0016020 C membrane GO:0016021 C integral component of membrane GO:0016740 F transferase activity GO:0016765 F transferase activity, transferring alkyl or aryl (other than methyl) groups GO:0019408 P dolichol biosynthetic process GO:0030154 P cell differentiation GO:0032383 P regulation of intracellular cholesterol transport GO:0035268 P protein mannosylation GO:0042632 P cholesterol homeostasis GO:0055092 P sterol homeostasis
12	O_BomoSK10010_3prime_partial:A_BomoSK_comp12006_c1_seq1 145bp	Bomo_Chr4	hypothetical_protein_KGM_02132_[Danaus_plexippus]
13	O_BomoSK10011_complete:A_BomoSK_comp12011_c0_seq1 1970bp	Bomo_Chr10	putative_Chromodomain_helicase-DNA-binding_protein_Mi-2-like_protein_[Danaus_plexippus]	GO:0000122 P negative regulation of transcription by RNA polymerase II GO:0000166 F nucleotide binding GO:0003676 F nucleic acid binding GO:0003677 F DNA binding GO:0003678 F DNA helicase activity GO:0003682 F chromatin binding GO:0004003 F DNA helicase activity GO:0004386 F helicase activity GO:0005515 F protein binding GO:0005524 F ATP binding GO:0005634 C nucleus GO:0005700 C polytene chromosome GO:0005829 C cytosol GO:0006351 P transcription, DNA-templated GO:0006355 P regulation of transcription, DNA-templated GO:0006357 P regulation of transcription by RNA polymerase II GO:0007283 P spermatogenesis GO:0007517 P muscle organ development GO:0008026 F helicase activity GO:0008270 F zinc ion binding GO:0016581 C NuRD complex GO:0016787 F hydrolase activity GO:0016818 F hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides GO:0016887 F ATP hydrolysis activity GO:0031491 F nucleosome binding GO:0032508 P DNA duplex unwinding GO:0035327 C euchromatin GO:0042766 P nucleosome mobilization GO:0043044 P chromatin remodeling GO:0045892 P negative regulation of transcription, DNA-templated GO:0046872 F metal ion binding GO:0048813 P dendrite morphogenesis GO:0051276 P chromosome organization GO:0051312 P chromosome decondensation GO:0070615 F ATP-dependent chromatin remodeler activity GO:0071923 P negative regulation of cohesin loading
14	O_BomoSK10012_3prime_partial:A_BomoSK_comp12011_c0_seq1 159bp	Bomo_Chr10	hypothetical_protein_FOVG_16617_[Fusarium_oxysporum_f._sp._pisi_HDV247]
15	O_BomoSK10013_complete:A_BomoSK_comp12011_c0_seq1 158bp	Bomo_Chr10
16	O_BomoSK10014_complete:A_BomoSK_comp12011_c0_seq1 145bp	Bomo_Chr10
17	O_BomoSK10015_complete:A_BomoSK_comp12011_c0_seq1 131bp	Bomo_Chr10	hypothetical_protein_SNOG_15175_[Parastagonospora_nodorum_SN15]
18	O_BomoSK10016_complete:A_BomoSK_comp12011_c0_seq1 111bp	Bomo_Chr10	Tat_binding_protein_1TBP-1-interacting_protein_TBPIP_[Blumeria_graminis_f._sp._tritici_96224]
19	O_BomoSK10017_complete:A_BomoSK_comp12011_c0_seq2 1970bp	Bomo_Chr10	putative_Chromodomain_helicase-DNA-binding_protein_Mi-2-like_protein_[Danaus_plexippus]	GO:0000122 P negative regulation of transcription by RNA polymerase II GO:0000166 F nucleotide binding GO:0003676 F nucleic acid binding GO:0003677 F DNA binding GO:0003678 F DNA helicase activity GO:0003682 F chromatin binding GO:0004003 F DNA helicase activity GO:0004386 F helicase activity GO:0005515 F protein binding GO:0005524 F ATP binding GO:0005634 C nucleus GO:0005700 C polytene chromosome GO:0005829 C cytosol GO:0006351 P transcription, DNA-templated GO:0006355 P regulation of transcription, DNA-templated GO:0006357 P regulation of transcription by RNA polymerase II GO:0007283 P spermatogenesis GO:0007517 P muscle organ development GO:0008026 F helicase activity GO:0008270 F zinc ion binding GO:0016581 C NuRD complex GO:0016787 F hydrolase activity GO:0016818 F hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides GO:0016887 F ATP hydrolysis activity GO:0031491 F nucleosome binding GO:0032508 P DNA duplex unwinding GO:0035327 C euchromatin GO:0042766 P nucleosome mobilization GO:0043044 P chromatin remodeling GO:0045892 P negative regulation of transcription, DNA-templated GO:0046872 F metal ion binding GO:0048813 P dendrite morphogenesis GO:0051276 P chromosome organization GO:0051312 P chromosome decondensation GO:0070615 F ATP-dependent chromatin remodeler activity GO:0071923 P negative regulation of cohesin loading
20	O_BomoSK10018_3prime_partial:A_BomoSK_comp12011_c0_seq2 159bp	Bomo_Chr10	hypothetical_protein_FOVG_16617_[Fusarium_oxysporum_f._sp._pisi_HDV247]
21	O_BomoSK10019_complete:A_BomoSK_comp12011_c0_seq2 158bp	Bomo_Chr10
22	O_BomoSK1001_complete:A_BomoSK_comp3781_c0_seq1 418bp	Bomo_Chr2	pyruvate_dehydrogenase_kinase_[Bombyx_mori]	GO:0000166 F nucleotide binding GO:0004672 F protein kinase activity GO:0004740 F pyruvate dehydrogenase (acetyl-transferring) kinase activity GO:0005524 F ATP binding GO:0005739 C mitochondrion GO:0005759 C mitochondrial matrix GO:0005975 P carbohydrate metabolic process GO:0006006 P glucose metabolic process GO:0006090 P pyruvate metabolic process GO:0006468 P protein phosphorylation GO:0016301 F kinase activity GO:0016310 P phosphorylation GO:0016740 F transferase activity
23	O_BomoSK10020_complete:A_BomoSK_comp12011_c0_seq2 145bp	Bomo_Chr10
24	O_BomoSK10021_complete:A_BomoSK_comp12011_c0_seq2 131bp	Bomo_Chr10	hypothetical_protein_SNOG_15175_[Parastagonospora_nodorum_SN15]
25	O_BomoSK10022_complete:A_BomoSK_comp12011_c0_seq2 111bp	Bomo_Chr10	Tat_binding_protein_1TBP-1-interacting_protein_TBPIP_[Blumeria_graminis_f._sp._tritici_96224]
26	O_BomoSK10023_complete:A_BomoSK_comp12012_c0_seq1 240bp	Bomo_Chr10	PREDICTED:_NECAP-like_protein_CG9132_[Bombyx_mori]	GO:0003674 F molecular_function GO:0005905 C clathrin-coated pit GO:0006810 P transport GO:0006897 P endocytosis GO:0015031 P protein transport GO:0016020 C membrane GO:0030125 C clathrin vesicle coat
27	O_BomoSK10024_internal:A_BomoSK_comp12013_c0_seq1 242bp	Bomo_Chr23	PREDICTED:_uncharacterized_protein_LOC101746620_[Bombyx_mori]
28	O_BomoSK10025_5prime_partial:A_BomoSK_comp12013_c0_seq1 106bp	Bomo_Chr23	DNA_processing_protein_DprA_[Alicyclobacillus_acidocaldarius]
29	O_BomoSK10026_internal:A_BomoSK_comp12013_c0_seq2 203bp	Bomo_Chr23	PREDICTED:_uncharacterized_protein_LOC101746620_[Bombyx_mori]
30	O_BomoSK10027_5prime_partial:A_BomoSK_comp12013_c0_seq2 106bp	Bomo_Chr23	DNA_processing_protein_DprA_[Alicyclobacillus_acidocaldarius]