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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
91 A_BomaMSG_c10141_g1_i1
416bp
DNA_polymerase_subunit_gamma-1,_mitochondrial_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003887 F DNA-directed DNA polymerase activity
GO:0005515 F protein binding
GO:0005739 C mitochondrion
GO:0005760 C gamma DNA polymerase complex
GO:0006260 P DNA replication
GO:0006261 P DNA-dependent DNA replication
GO:0006264 P mitochondrial DNA replication
GO:0007562 P eclosion
GO:0008296 F 3'-5'-exodeoxyribonuclease activity
GO:0008340 P determination of adult lifespan
GO:0008408 F 3'-5' exonuclease activity
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0071897 P DNA biosynthetic process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:1.77 TPM:0.79
92 A_BomaMSG_c10141_g2_i1
294bp
DNA_polymerase_subunit_gamma-1,_mitochondrial_[Bombyx_mori]
GO:0002020 F protease binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0003887 F DNA-directed DNA polymerase activity
GO:0005739 C mitochondrion
GO:0005760 C gamma DNA polymerase complex
GO:0006260 P DNA replication
GO:0006264 P mitochondrial DNA replication
GO:0006287 P base-excision repair, gap-filling
GO:0007568 P aging
GO:0008408 F 3'-5' exonuclease activity
GO:0009416 P response to light stimulus
GO:0010332 P response to gamma radiation
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0042645 C mitochondrial nucleoid
GO:0043195 C terminal bouton
GO:0043234 C protein-containing complex
GO:0055093 P response to hyperoxia
GO:0070062 C extracellular exosome
GO:0071333 P cellular response to glucose stimulus
GO:0071897 P DNA biosynthetic process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:0.93 TPM:0.42
93 A_BomaMSG_c10142_g1_i1
287bp
FPKM:2.31 TPM:1.03
94 A_BomaMSG_c10142_g1_i2
316bp
FPKM:0.93 TPM:0.41
95 A_BomaMSG_c10145_g1_i1
311bp
translation_initiation_factor_eIF-2B_subunit_epsilon_isoform_X3_[Bombyx_mori]
FPKM:2.08 TPM:0.93
96 A_BomaMSG_c10146_g1_i1
260bp
FPKM:10.32 TPM:4.61
97 A_BomaMSG_c10147_g1_i1
657bp
FPKM:1.99 TPM:0.89
98 A_BomaMSG_c10147_g1_i2
364bp
FPKM:0.00 TPM:0.00
99 A_BomaMSG_c10148_g1_i1
348bp
FPKM:2.72 TPM:1.21
100 A_BomaMSG_c1014_g1_i1
233bp
PREDICTED:_uncharacterized_protein_LOC105381701_[Plutella_xylostella]
FPKM:1.59 TPM:0.71
101 A_BomaMSG_c10150_g1_i1
322bp
polynucleotide_5'-hydroxyl-kinase_NOL9_[Bombyx_mori]
FPKM:5.08 TPM:2.27
102 A_BomaMSG_c10151_g1_i1
310bp
reverse_transcriptase_-_silkworm_transposon_Pao
FPKM:4.20 TPM:1.87
103 A_BomaMSG_c10152_g1_i1
277bp
glycerophosphodiester_phosphodiesterase_1_[Bombyx_mori]
FPKM:6.33 TPM:2.83
104 A_BomaMSG_c10154_g1_i1
294bp
FPKM:0.00 TPM:0.00
105 A_BomaMSG_c10154_g1_i2
363bp
FPKM:3.47 TPM:1.55
106 A_BomaMSG_c10155_g1_i1
346bp
huntingtin_[Bombyx_mori]
GO:0000050 P urea cycle
GO:0000052 P citrulline metabolic process
GO:0000132 P establishment of mitotic spindle orientation
GO:0002039 F p53 binding
GO:0005515 F protein binding
GO:0005522 F profilin binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005770 C late endosome
GO:0005776 C autophagosome
GO:0005783 C endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0005814 C centriole
GO:0005829 C cytosol
GO:0006606 P protein import into nucleus
GO:0006839 P mitochondrial transport
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0006890 P retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
GO:0006915 P apoptotic process
GO:0007005 P mitochondrion organization
GO:0007029 P endoplasmic reticulum organization
GO:0007030 P Golgi organization
GO:0007212 P dopamine receptor signaling pathway
GO:0007283 P spermatogenesis
GO:0007369 P gastrulation
GO:0007417 P central nervous system development
GO:0007420 P brain development
GO:0007569 P cell aging
GO:0007611 P learning or memory
GO:0007612 P learning
GO:0007625 P grooming behavior
GO:0007626 P locomotory behavior
GO:0008088 P axo-dendritic transport
GO:0008134 F transcription factor binding
GO:0008306 P associative learning
GO:0008340 P determination of adult lifespan
GO:0008542 P visual learning
GO:0009653 P anatomical structure morphogenesis
GO:0009952 P anterior/posterior pattern specification
GO:0016023 C cytoplasmic vesicle
GO:0016197 P endosomal transport
GO:0016234 C inclusion body
GO:0019244 P lactate biosynthetic process from pyruvate
GO:0019805 P quinolinate biosynthetic process
GO:0021756 P striatum development
GO:0021988 P olfactory lobe development
GO:0021990 P neural plate formation
GO:0022008 P neurogenesis
GO:0030072 P peptide hormone secretion
GO:0030073 P insulin secretion
GO:0030424 C axon
GO:0030425 C dendrite
GO:0030659 C cytoplasmic vesicle membrane
GO:0031587 P positive regulation of inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity
GO:0034047 P regulation of phosphoprotein phosphatase activity
GO:0034452 F dynactin binding
GO:0035176 P social behavior
GO:0042445 P hormone metabolic process
GO:0042802 F identical protein binding
GO:0043066 P negative regulation of apoptotic process
GO:0043234 C protein-containing complex
GO:0043524 P negative regulation of neuron apoptotic process
GO:0044325 F transmembrane transporter binding
GO:0045505 F dynein intermediate chain binding
GO:0045724 P positive regulation of cilium assembly
GO:0046902 P regulation of mitochondrial membrane permeability
GO:0047496 P vesicle transport along microtubule
GO:0048167 P regulation of synaptic plasticity
GO:0048341 P paraxial mesoderm formation
GO:0048487 F beta-tubulin binding
GO:0048666 P neuron development
GO:0050809 F diazepam binding
GO:0051402 P neuron apoptotic process
GO:0051592 P response to calcium ion
GO:0051881 P regulation of mitochondrial membrane potential
GO:0051938 P L-glutamate import
GO:0055072 P iron ion homeostasis
GO:0071539 P protein localization to centrosome
GO:1901215 P negative regulation of neuron death
GO:1902857 P positive regulation of non-motile cilium assembly
GO:2001237 P negative regulation of extrinsic apoptotic signaling pathway
FPKM:2.40 TPM:1.07
107 A_BomaMSG_c10156_g1_i1
244bp
FPKM:3.53 TPM:1.58
108 A_BomaMSG_c10160_g1_i1
276bp
FPKM:6.38 TPM:2.85
109 A_BomaMSG_c10162_g1_i1
216bp
FPKM:3.93 TPM:1.76
110 A_BomaMSG_c10166_g1_i1
236bp
FPKM:7.69 TPM:3.44
111 A_BomaMSG_c10168_g1_i1
374bp
acetyl-CoA_carboxylase_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003824 F catalytic activity
GO:0003989 F acetyl-CoA carboxylase activity
GO:0004075 F biotin carboxylase activity
GO:0005524 F ATP binding
GO:0005623 C obsolete cell
GO:0005737 C cytoplasm
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0006633 P fatty acid biosynthetic process
GO:0008152 P metabolic process
GO:0016874 F ligase activity
GO:0046872 F metal ion binding
GO:2001295 P malonyl-CoA biosynthetic process
FPKM:2.10 TPM:0.94
112 A_BomaMSG_c10172_g1_i1
397bp
uncharacterized_protein_LOC101740300_[Bombyx_mori]
FPKM:1.63 TPM:0.73
113 A_BomaMSG_c10173_g1_i1
379bp
FPKM:1.76 TPM:0.79
114 A_BomaMSG_c10174_g1_i1
422bp
FPKM:0.00 TPM:0.00
115 A_BomaMSG_c10174_g1_i2
404bp
FPKM:3.44 TPM:1.54
116 A_BomaMSG_c10175_g1_i1
809bp
lysine-specific_demethylase_6A_isoform_X1_[Bombyx_mori]
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0001701 P in utero embryonic development
GO:0001843 P neural tube closure
GO:0003007 P heart morphogenesis
GO:0003016 P respiratory system process
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0007507 P heart development
GO:0010468 P regulation of gene expression
GO:0010628 P positive regulation of gene expression
GO:0016491 F oxidoreductase activity
GO:0016568 P chromatin organization
GO:0021915 P neural tube development
GO:0031490 F chromatin DNA binding
GO:0032452 F histone demethylase activity
GO:0032525 P somite rostral/caudal axis specification
GO:0035097 C histone methyltransferase complex
GO:0035264 P multicellular organism growth
GO:0042802 F identical protein binding
GO:0044666 C MLL3/4 complex
GO:0046872 F metal ion binding
GO:0048333 P mesodermal cell differentiation
GO:0048568 P embryonic organ development
GO:0048570 P notochord morphogenesis
GO:0051213 F dioxygenase activity
GO:0051568 P histone H3-K4 methylation
GO:0055114 P obsolete oxidation-reduction process
GO:0060070 P canonical Wnt signaling pathway
GO:0071557 P histone H3-K27 demethylation
GO:0071558 F histone H3-tri/di-methyl-lysine-27 demethylase activity
GO:0072358 P circulatory system development
FPKM:2.04 TPM:0.91
117 A_BomaMSG_c10176_g1_i1
369bp
FPKM:2.76 TPM:1.23
118 A_BomaMSG_c10177_g1_i1
352bp
FPKM:2.99 TPM:1.34
119 A_BomaMSG_c10178_g1_i1
438bp
HEAT_repeat-containing_protein_5B,_partial_[Helicoverpa_armigera]
FPKM:5.84 TPM:2.61
120 A_BomaMSG_c10179_g1_i1
628bp
uncharacterized_protein_LOC101744677_[Bombyx_mori]
FPKM:7.60 TPM:3.40
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