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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoSK_comp12011_c0_seq1
Scaffold_idBomo_Chr10
NCBI non-redundant
(nr)		PREDICTED:_chromodomain-helicase-DNA-binding_protein_Mi-2_homolog_isoform_X2_[Papilio_polytes]
Ontology
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003678 F DNA helicase activity
GO:0003682 F chromatin binding
GO:0004003 F DNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0005829 C cytosol
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007283 P spermatogenesis
GO:0007517 P muscle organ development
GO:0008026 F helicase activity
GO:0008270 F zinc ion binding
GO:0016581 C NuRD complex
GO:0016787 F hydrolase activity
GO:0016818 F hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0016887 F ATP hydrolysis activity
GO:0031491 F nucleosome binding
GO:0032508 P DNA duplex unwinding
GO:0035327 C euchromatin
GO:0042766 P nucleosome mobilization
GO:0043044 P chromatin remodeling
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0048813 P dendrite morphogenesis
GO:0051276 P chromosome organization
GO:0051312 P chromosome decondensation
GO:0070615 F ATP-dependent chromatin remodeler activity
GO:0071923 P negative regulation of cohesin loading
Transcript
Level		FPKM:6.06 TPM:6.10
ORF EntryO_BomoSK10016_complete:A_BomoSK_comp12011_c0_seq1
Sequence
(Nucleotide)
CCTGTAAGTTTTATTCAGTTTTCAATTTTTGGTAAATTAAAAATAAAGATTTCATAAGTC
CACAATTCACTTACACGATAGAAAAGATTCATACAGATCAGGATGAAATAAATAATATTA
TGAGTTATTTTCGCTATGACGTCATGTAATCTATCTGAACTAATCACAAATATAATTATG
ACTTCGGAGCCGATGTGGAAACAGGAATCTTCAAAAAAGCTTACATCTAATTCACCTACG
CGGCGACATATCCGCTCGCTAAAACAAAATGATACAATAATCACGTTATTGTTTGAGCTC
TCGATAATTTATTTCAACGTGCATATCGACCAGCGAGAAAATCTAAACGGGCCGTCAAGC
ATGTCACTTCTAGCCTAAGAATTAAATTATTATTCTATGTTTTACCTGCGGGTTACGTCA
AATCGAATATAGTTGTTTAAATTACGGAGTTTATGATTTATTCGAGTTAGAGGATGATGT
AGGCTGTCCGGGCACGGAGTACTGCGGTCGGAAGTTGGAGAAATTAGCCGCCGTCGCGGC
CGACGCCGCGAACCCGGGGAGCGTGCCGCCGGGCTGGAAGCCGGTCGGGAACTGCGGCAT
TTGGGCAGCGGGCACGGGGTTGCCTGCGGTGGCTGCGAGGCGCGACAGGATGGACCGCTC
CGACATCTGCAGGCGCTGCGCGACGGGCGGGATGCGCGCCAGCGTGGCCGGCAGCCGCGA
CACGTCCGACTTCATGTCCGACAGCAGCTCTTCCAGCTGGTTCAGCACCTTGTGCAACAC
CGCGTTGGCTGGTTTGTTCCCAGCGAGGGACTCCTTGCTGAGATGCTGGTGGGACTCAGC
AAGACACTCGACTTCAGCGAACCGCGCGTTCAAGGACATTGCGGGATGGTTCGGATCTTG
TGTGAGGTTCAAGTATGCCGCTCTACGGAGCTGCTCCTCGATCACTAACGCTTGTTCTAA
AAGCTTAAAACGCCGAGCCAAAAACTTATTCTTAATCTCGAGGAAGTTTCCTTTGCCGAC
GTCCATCTTGAATGGCTCGTTAATGATCGCGAATCGCAGGTCGTTCTGTATGTCCTGCCA
GCGACCGTATCCGTGCGTGACGATTCCGGCCAGCAGCCAGTAGTCGTGTCTTCGGTGCCA
GATTTCGTATTCCCTGCCGGGCGCGGCGGCTCGCTCTTCATTCAACCACAGAGTATGGAG
TTCGGTAAAGCCTCCGTCGGCGATATTGAACATGAACTTGCGACGTTCTACTTTGAGATC
TTCCTCTTCTTTAACCAGAACAACGTCATCGTCGTCGTCCTCCTTCTTCTCCTCTTTTGG
TTTCTCAGAGACGTCAGATGCCGCCTTTTCACTTCTTACATCCTCTTTCTTGTCGGTCTC
TTCCTTCAATTCGTCTTTAACTTTAGGTGACTCTTTGCCTTCTTTCTTTTCATCAGTTTT
ATCTTCATCTTTTGGAGGTTCCTCGTCAACGGACATACGTCTTTCGGCCTCTTTCTCGTC
TTCTTTTTGTGATTCTTTTTCTTCCGCACTATCCTCCTTGACATCGGCCGTATCCATCGG
TTCTGCTTTGAGTTTATCTTTAACTTCCAATTTGTCATCTTTAGTTTCCTCTTTATCGTC
CTTGTCAGAGCCAGAGGGCGTGGCGGGCGTGGCTGCCTGTCCGTGAGGCAGCAAGGTGGG
TGCGGGCGAGGGTGCTGCGGAGGTGATGGGTGTGGCGGTGGAGGGCGCGGGACTGGGGGC
GGCACTCTCACTCGCCCCAGACACTTTCACCGGCTCAACTGGTTTTCTCACCAGTTCCGG
CATGCTGTAGTACCCGTTGATGTGTTCGAATTCCTGAACCTTTTTCCTGATCAAACTCAT
TACCCCGATTCGTGTCAAAACGTGCTGACGGGATAATCCTTCCCTCGGAACGCCGTCCGC
GAATGTTTCCGCGTTGTCGGCGCCCGGTTCGCAGAGATGGCGCATGAACAACGACACGTA
GGCCTTGAAGTTGCGCTCAGACTTCCCGCGCAGATCTCTCACTAACCACTGCGAGTTGAA
AGCGTCCTGCGGTGGCATCCCGTACCGCATGATAGCATTGAGGAATGACTTCCTCTGCCT
GGCGTTGAAGCCGAGAACTTCCATGTTGCCGCCGACTCTGGCCAGTAATGGAGGCAGCGG
TCGGTCGCGTTCCTCTCGCTTTTCGAGGCGACGCTTACTCCGGCGACTGAGCAGATCTCC
ATTATCATTCTTTTCATCAAAATCGTCGTCTTCTTTGTCATCCTCGCTACCTTGAGAGAA
ATCGGAATTATAGTCCGAGCCATTCTCTTGCCAAGTAGAATCCTCTCTGTTTTCTGTCTG
CGCAACACTTCCATCGTTGTAGTTAACTTGTTTACGTACACGTTTGCCTTTCCCAAGCGT
CCGCGCTTGATCTTCTTGATGTTGTTCGTAGTGATGCCTGAGAAGTTTGATCCAGTACGC
AGGATCAGTATTCTCTGCTTCCTGTTTTATAATTTCTGTATCGACTTCCTCTTCACCATC
GCCTTCCTTAGTGGAATAACTAGCAACTTTGAAAGAGCTAAGATATTCATTAGCCCAAGA
TTCTTTCTGTTCTATTCCTTCCTTAGACCGATCGAGTAATTCACCCACAGCTCTATCGTC
ATAATGAATAGCCTCCTCTTTGCCTTCCTCTTCTTTGAACAGCTCTTCAGTACCGAATCG
AAGAATATCATCCAACTCTTGCTTAGTGAAGTTAGCTCCCTTTCCGCCCATGCCCGGTCG
CACCACCAAATGCGTTAACATCATTTTTCGTTTAGCGACTTGGGTGACTCTTTCTTCGAC
GCTGTTACGTGTTACAAAACGATAAATCATAACTTTGTTGGCTTGGCCAATACGATGCGC
TCGAGAGAAAGCTTGAATGTCATTGTGAGGATTCCAATCGGAATCATAAATGATAACAGT
GTCGGCGGTCGCCAAATTGATGCCCAGACCTCCCGCTCTTGTCGACAAGAGGAACACAAA
CTGTTGGGCTCCCGGGGCATTAAACCTATCTATGGCTTCTTGACGGATCGTTCCCGTGAT
ACCACCGTCAATTCTTTCATACTTGTATCCCTCACCCTCCAAGAAGTCTTCAAGTATATC
CAACATTTTCGTCATCTGTGAGAAAATCAGTACCCTATGACCCTGCTCTTTCAATTGTTT
CAACATTTTAGATAGGAGCACGAGTTTTCCAGAAGCTTTGATCAAAGCTTGCGTGTCATA
ATTTCCGTGCGGACCTAACGGAGCTTCCTCCGCTGCGACTGGGAATAGATAAGGATGATT
ACAACATTTCTTCAGGTCCATCATGACGTTAAGTAGTGAAACAGTTTGACCTCCACTCTT
GGGGTTCAAAGCTTCATAATTCCTAGTTAGAATGTATTTATAATATTTCTTTTGCATGGG
CGATAATTCTACACGGACAATGAACTCTGACTTAGTAGGCATGTTTTTCAGTACGTCAGC
TTTCAAACGTCGCAACATGTGAGGCCCTAGCATTTCGTGGAGCCTCTTCACCTGTTCTTC
TTTCGAAACGTCAGCGAACTCATTCTGGAATGCTGCGAGATCATTGAACTTGTCTTTATT
TAAGAAATTGAGAAGATGGAACAACTCTTCCAAGTTATTCTGTAGTGGTGTACCCGTAAG
AAGCAATTTATAATTGATGTGATAACCGGCCAAAAGCCTGAAAAATTTCGACTGATTACT
CTTCAGTCTGTGGGCTTCGTCTACAACGAGAACTGCCCAATCTATAGATCCTAAGCACGT
AGAGTCAATTGAGATCAATTCATAGGAAGTGAGTAAAACATTAAATTTCACTTGCGACTT
GATTTTAGAAGGTCTGCCACCTCTGTTAGCACCGTCATCAAATGTTAGTTCATTCTCTCG
GATCACAGCCCTCGAATCTTTGTCACCTACATATGTTATACAGTACAAGTCCGGTGCCCA
TAGCTCGAATTCCCTCTCCCAATTAATGATTGTGGATAGCGGCACGGACACCAAGAAAGG
TCCTTTAGAATGGCCTTCCTTGAATAGAGAGTATAGGAATGTAACGGTTTGGATGGTTTT
ACCGAGACCCATCTCGTCAGCCAGTATGGTGTCGATGCCTTGTCCCCAGGAATACCGAAG
CCAGTTGAGACCCTCTAGCTGGTAAGGATGCAGCTGCATGCCGGTTTCGTACACAAACTG
TGGTTGGTCTTCGTATTTCTTATTGAGATTACTGGTAGGACGATCAGGCGGCGGATTGTA
TTTCTTGGGGCGCATTTGTAGGCCGGCGCTGCTGTCGTCTTCGTCCGTGAGGTCTTTGTT
CTTACTTTTGCGACCTGGTTTCTTACCTTTGAAGCCTTTAGTCTTACCCTCTGACGTTAT
GAACGCTCGCATGTCTTGATAATAGTCCATGGCTTGCTTGAGTCCGGCAATGTCTTCATG
CTCAGATTCCCACGTGGCCTGATCGTATGAGAGATCTCTCCATTTGACTAAAAAGTATGT
AGTGCCGTCTCTTGAAGTGCGATGGTTGATCACACGGTGTACTACAAGCCACTCAGGTTT
GACGCCATATCTATAATACTTCTCTTCGAGTAATTTTTCGTTGTTAGATTCCGTATCCTG
TTGTTTATCTTTGAGTCGTTTGTACCTACTATCTCGTTCATCGAGGGGCTCTTCAAGTTT
AGGCGGTTCTTCGGGATCCGACTTACGCATGTAGTAACGATACATTAGTGGATGGAACAC
GTCGAGCTGTAGTTCAGATATCCAGCTGCAGTGCCAATAAGATCGTTCATGCCACTTCAC
AAAAAATTCTCTTGAACGCGGAGCCTTGGACTTGCTTGACTGTTCCTTCCAACGCCAAGT
TAAAATTTTGGCCACTTTTCCATCCAATGGTGGACAACTGCATCTGGGACATTTCCACTC
GCCATCGGGAATTTCTTCAAGCGGCGGATTCAAGCAGAACCGATGATACGCTGAAGGACA
AGAATCGCAGCATAACAACTCGCCGCCGTCCTTACAAATTCTGCAAAACTCCTGATGTTC
ATCGTCGTCGTCATTGTCGGGTGCGGGCTCGGCCTCGCAGTGCGGACACGACCAGCGGCC
CTCCGGCGTCTCCTCGAGCTCGGGGTCGAGGCACACGAGGTGGTAGGCCCGTGGACATGT
GTCACACAGAATTATCTCGCCGCCTTGCTGACACACCTCACAATAGTCCTGATGTTCGTG
CTCTCCCTCAGCACCATCAGGAAACTTGCTGGTCGTCTTCAACTTCCTTTTCTTTTTAGA
TTTGTTTCCGATCTTTGTCTTTGCCTTCTTTTTAGGTAGCGCCGCTGTAGGATCTTCTTC
TTTAGGTGGCGCGGCTTCGTCAGCTGCAGCTGCAACAGGAGGCTTTGTTTCCTCGGCTTC
AGCTAACATCTGCTCGAACTCGGCGTCTGAATCTGAATTTACAGCGCTGCCTTCTTGTTC
CTCCTCGCTGCTGGTTCGTTTTCTCTTGCTGAACTTGATCTTCAGTGTAGGTACTTTAGG
CTTCCTGCCGGGCTTGCCTCGTGGCGTGACGGCGCCGGTCGCATTCTTGGGCTTGCGTCC
ACGTTTCCGCGGCACAGTAGCGCCTTCGTCACTTGCTTCTTCCTCCTCTTCTTCTTCGGG
CTCCTCTATTGTCTCATCAGTCTTTGCTTCTTTGGGTGTGCGTCCGGGTCTCTTAGAGAC
ATAGTCAGAAGTAGCAGAAGTATTTGTATTCTCTTCAGAGCCCATACTTTGTGGTACACT
AGTGCTTAAGTGTGGATTCGTTTCACAGAACATCCGCCATTTTGCAGCTACTAGCATCAT
TAACTTTGATACTGGCACCTTTGGATTCTCTTTAACGAGCATTGGACGAACATGTTGTTG
AAACAGTTTGTATGTAGTCAAGTTTTCGTAGTCCGCATCCGCATATTGTATGTCAACATC
GGTAAGGCCGAACGAGGAGCACACCTCCTCGACTGTTGGCATACCAGAGCCAGAGTCTGA
TGCTGTAGTTGTGGATGGTGTGTTGTGTTTGCTACTTCGACCTTTACGGGATTTCTTGCT
TGAAGAGACAGCGCTCAGTGCATAATCACTGTCACCTTCTGCTTCCATCTCGAGGCCAAA
ATCATCATCATCTTCACTTTCATTCTTTCGCTTCTTCTTTTTCTTTCTTCCCTTTTTTTC
TTCTCCTCTGGCTTTCCTTTTCTTTCCCTTTTTCTTTTTTCTACCATCTTCAGGGGAATA
ATCTTCATCTTCCTTTGGTGGAGCCTCGTCACTATCTCCGGAATTGTCATTTTGACCCTC
ACCTTCCTCTACTTCCTCATCACCTGCAAAAGAGCCGTCCACTTCCTCATCTGATGCCAT
TTAGATTACTATCAAACACAACTTGGAATAAGATGATAGATTTTTGGCTAGAAAAGATAA
AGGACGCGCAGTTTTTGCGACAAATGGTAATTAATTCAGAAATTGATGCCGCCGTCACTT
CTCGACGAGCCAG
(6493 bp)

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