GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000053-TA|BGIBMGA000053-PA|IPR012464|Protein of unknown
function DUF1676
         (493 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    24   2.1  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    24   2.8  
AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase ...    24   2.8  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    24   2.8  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    24   2.8  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    24   2.8  

>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 24.2 bits (50), Expect = 2.1
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 2/38 (5%)

Query: 353 SAVNELKTERNSRNGDASTDDNVKCNTQYNPDGKPAVC 390
           S+VN  +    SR G   TD+++   ++ + DG   VC
Sbjct: 56  SSVNRFRLR--SRPGHRKTDNSLSATSKKDKDGYKVVC 91


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 23.8 bits (49), Expect = 2.8
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 5/48 (10%)

Query: 90  EDKPPVNTTDTAQLASLIDEAVDNFFATHTLRVKALGRELSMTRGVNE 137
           E+K P      AQLA L  E  +N + T   R     ++LS   G+NE
Sbjct: 227 EEKRPRTAFSGAQLARLKHEFAENRYLTERRR-----QQLSAELGLNE 269


>AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase
           protein.
          Length = 268

 Score = 23.8 bits (49), Expect = 2.8
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 89  EEDKPPVNTTDTAQLASLIDEAVDNFFATHTLRVK 123
           E+D  P        LAS+IDEA      T T+RV+
Sbjct: 51  EDDNDPHVNEYVESLASIIDEAATKVHGT-TVRVR 84


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 23.8 bits (49), Expect = 2.8
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 89  EEDKPPVNTTDTAQLASLIDEAVDNFFATHTLRVK 123
           E+D  P        LAS+IDEA      T T+RV+
Sbjct: 365 EDDNDPHVNEYVESLASIIDEAATKVHGT-TVRVR 398


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 23.8 bits (49), Expect = 2.8
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 89  EEDKPPVNTTDTAQLASLIDEAVDNFFATHTLRVK 123
           E+D  P        LAS+IDEA      T T+RV+
Sbjct: 598 EDDNDPHVNEYVESLASIIDEAATKVHGT-TVRVR 631


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 23.8 bits (49), Expect = 2.8
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 89  EEDKPPVNTTDTAQLASLIDEAVDNFFATHTLRVK 123
           E+D  P        LAS+IDEA      T T+RV+
Sbjct: 598 EDDNDPHVNEYVESLASIIDEAATKVHGT-TVRVR 631


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.315    0.130    0.363 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,004
Number of Sequences: 317
Number of extensions: 3593
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 6
length of query: 493
length of database: 114,650
effective HSP length: 59
effective length of query: 434
effective length of database: 95,947
effective search space: 41640998
effective search space used: 41640998
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)
S2: 45 (22.2 bits)