GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000071-TA|BGIBMGA000071-PA|undefined
         (144 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0260 - 27233734-27234324,27234422-27234573,27235006-272351...    28   2.6  
05_04_0389 - 20845490-20845600,20845697-20846006,20846097-208462...    27   7.9  
02_05_0979 + 33268294-33269595                                         27   7.9  

>02_05_0260 -
           27233734-27234324,27234422-27234573,27235006-27235153,
           27235547-27235956,27236137-27236212
          Length = 458

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 27/93 (29%), Positives = 36/93 (38%), Gaps = 11/93 (11%)

Query: 6   NIILATQNRASSFKFNAS----FGQDSQFTVPITLVHGFCANVTLVPGQLARAELTVDIT 61
           NI+L TQ  A    F  +     G  S  T  +   +G+ A     P  +A   L V   
Sbjct: 257 NILLDTQFHAKLSDFGLAKDGPAGGSSHVTTRVMGTYGYAA-----PEYVATGHLYVKSD 311

Query: 62  TVGIQITYEAYLSGVVALAYDRPHNGHHF--WA 92
             G  +     L+G+ AL   RP   HH   WA
Sbjct: 312 VYGFGVVLLELLTGLRALDAGRPSGQHHLVDWA 344


>05_04_0389 -
           20845490-20845600,20845697-20846006,20846097-20846242,
           20846319-20846426,20846508-20846615,20846997-20847109,
           20847340-20847437,20847530-20847714,20847811-20847953,
           20848293-20848377,20848486-20848624,20848686-20848780,
           20848894-20849037,20849114-20849206,20849310-20849376,
           20849529-20849641,20849750-20849845,20853885-20854058
          Length = 775

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 11/30 (36%), Positives = 16/30 (53%)

Query: 95  IDHVLYTCGTKNGITSEQYINISYYDNANL 124
           + + +Y  GT  G  +  Y+  SYYD A L
Sbjct: 303 VSYYMYHGGTNFGRFAASYVTTSYYDGAPL 332


>02_05_0979 + 33268294-33269595
          Length = 433

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 9/22 (40%), Positives = 13/22 (59%)

Query: 85  HNGHHFWAPNIDHVLYTCGTKN 106
           H+ H+ W P+  H+L   GT N
Sbjct: 137 HHTHYLWNPSTRHILRLPGTDN 158


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.322    0.136    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,889,114
Number of Sequences: 37544
Number of extensions: 138012
Number of successful extensions: 255
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 253
Number of HSP's gapped (non-prelim): 3
length of query: 144
length of database: 14,793,348
effective HSP length: 75
effective length of query: 69
effective length of database: 11,977,548
effective search space: 826450812
effective search space used: 826450812
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 56 (26.6 bits)