GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000057-TA|BGIBMGA000057-PA|IPR007087|Zinc finger,
C2H2-type
         (160 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0221 - 21649030-21649290,21649553-21649610,21649943-216502...    29   1.8  
08_02_0975 + 23205590-23205733,23206813-23206894,23207017-232071...    29   1.8  
10_08_0252 - 16191136-16191279,16191639-16191750,16191833-161919...    28   4.1  
04_03_0598 - 17826167-17826213,17826691-17826837,17827793-17828744     28   4.1  
03_05_0809 - 27858389-27858604,27858630-27858659                       27   5.4  
11_04_0391 + 17127309-17127449,17127886-17127950,17129209-171293...    27   9.4  
03_06_0052 - 31295839-31295883,31296312-31296380,31296458-312965...    27   9.4  

>09_06_0221 -
           21649030-21649290,21649553-21649610,21649943-21650292,
           21650605-21650799
          Length = 287

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 13/35 (37%), Positives = 18/35 (51%)

Query: 56  TFEHTIERLNEHFEMAETADCSTYCEGCLACLTAY 90
           TFEHT++ L  +    +  DCST  +    CL  Y
Sbjct: 220 TFEHTVDILYRNVIQKKKEDCSTMQQLGATCLAGY 254


>08_02_0975 +
           23205590-23205733,23206813-23206894,23207017-23207127,
           23207212-23208006,23208338-23208704,23209219-23209300,
           23209477-23209532,23209888-23209942
          Length = 563

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 4/75 (5%)

Query: 60  TIERLNEHFEMAETADCSTYCEGCLACLTAY--FIYICTETHYEKHLRKVSKFIATQNER 117
           T+E  +  +E+ ETA C +  EG  A +TA+        E   +K + K+ K  +   ER
Sbjct: 481 TVESKSSAWEVTETAKCISKIEGEEAKMTAWENLQKAKAEAAIQKLVMKLEKKRSYSLER 540

Query: 118 VYNP--RGVHITDPI 130
           ++N   R  H  D I
Sbjct: 541 IFNTLRRHCHFQDGI 555


>10_08_0252 -
          16191136-16191279,16191639-16191750,16191833-16191924,
          16192564-16192641,16192764-16192796,16193712-16193771,
          16193912-16193999,16194155-16194180
          Length = 210

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 10/21 (47%), Positives = 11/21 (52%)

Query: 75 DCSTYCEGCLACLTAYFIYIC 95
          D   YC GC AC+  YF   C
Sbjct: 69 DVQQYCSGCGACMGKYFCEKC 89


>04_03_0598 - 17826167-17826213,17826691-17826837,17827793-17828744
          Length = 381

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 7/81 (8%)

Query: 79  YCEGCLACLTAYF---IYICTETHYEKHLRKVSKFIATQNERVYNPRGVHITDPILRGLR 135
           +C G   C T  F   I   + T   K +R+    + + + R  +   ++ITDP  RGL 
Sbjct: 199 HCNGT-GCCTIDFGAEINAYSSTIEFKFVRQAETNLESYHNRSLSWDTIYITDPASRGL- 256

Query: 136 VIEITMIDVPNCQSPTGNNTS 156
                + D P+C S   N TS
Sbjct: 257 --SWKIPDQPDCASARKNQTS 275


>03_05_0809 - 27858389-27858604,27858630-27858659
          Length = 81

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 1/31 (3%)

Query: 65 NEHFEMAETADCSTYCEGCLACLTAYFIYIC 95
          N   E A +  CS  C  C  C+ AYF Y C
Sbjct: 39 NSSCEGAGSEPCSYACGSCQGCMQAYF-YRC 68


>11_04_0391 +
           17127309-17127449,17127886-17127950,17129209-17129305,
           17129729-17130193,17130505-17130528
          Length = 263

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 2/32 (6%)

Query: 61  IERLNEHFEMAETADCSTYC--EGCLACLTAY 90
           +E   +H+    TA CS  C  EGC   L +Y
Sbjct: 85  LENFEDHYRTRHTASCSYECLVEGCGVKLKSY 116


>03_06_0052 -
           31295839-31295883,31296312-31296380,31296458-31296521,
           31296598-31296680,31297243-31297308,31297426-31297516,
           31298090-31298247,31298432-31298476,31299189-31299318,
           31300685-31300935
          Length = 333

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 102 KHLRKV-SKFIATQNERVYNPRGVHITDPILR 132
           +H RK  SKFI   N+ + +P  V   D +LR
Sbjct: 275 RHSRKPWSKFINADNQHLVSPEAVDFLDKLLR 306


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.323    0.136    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,166,992
Number of Sequences: 37544
Number of extensions: 147276
Number of successful extensions: 267
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 264
Number of HSP's gapped (non-prelim): 7
length of query: 160
length of database: 14,793,348
effective HSP length: 77
effective length of query: 83
effective length of database: 11,902,460
effective search space: 987904180
effective search space used: 987904180
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 56 (26.6 bits)