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Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000078-TA|BGIBMGA000078-PA|IPR012496|TMC
         (612 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15718| Best HMM Match : No HMM Matches (HMM E-Value=.)             125   1e-28
SB_23825| Best HMM Match : C4dic_mal_tran (HMM E-Value=4.9)            86   7e-17
SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)              76   1e-13
SB_57396| Best HMM Match : No HMM Matches (HMM E-Value=.)              66   6e-11
SB_10482| Best HMM Match : TMC (HMM E-Value=0.03)                      34   0.29 
SB_29004| Best HMM Match : TMC (HMM E-Value=2.7e-14)                   34   0.29 
SB_30352| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.51 
SB_59015| Best HMM Match : Arif-1 (HMM E-Value=0.62)                   33   0.67 
SB_26103| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.89 
SB_49663| Best HMM Match : TolA (HMM E-Value=0.059)                    31   2.1  
SB_18574| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   4.7  
SB_45179| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   6.3  
SB_24046| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   6.3  
SB_56637| Best HMM Match : 7tm_1 (HMM E-Value=3.7e-06)                 29   8.3  
SB_1063| Best HMM Match : COLFI (HMM E-Value=0)                        29   8.3  
SB_47699| Best HMM Match : 7tm_1 (HMM E-Value=6.6e-23)                 29   8.3  
SB_7268| Best HMM Match : DUF472 (HMM E-Value=0.99)                    29   8.3  
SB_6742| Best HMM Match : EGF_CA (HMM E-Value=5.40004e-41)             29   8.3  

>SB_15718| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 712

 Score =  125 bits (301), Expect = 1e-28
 Identities = 92/358 (25%), Positives = 151/358 (42%), Gaps = 28/358 (7%)

Query: 246 NIFLDVIQGTGWMERTILFYGVYTDQIYTYYVNSLYHTKLFYNMPMAYILVPISWTLLSL 305
           N  L    G GW+  T++FY  Y  +        +    + YN+P+AY+L      +L  
Sbjct: 201 NAVLQFFTGQGWIGTTLMFYSNYPSK------RLISEEGVTYNLPLAYLLTGGCTLILCF 254

Query: 306 IAIVKTAARGFKQKLIESEGQFYKYCNLVFGGWDFCIHNDRSARIKHQALYNEIKGCIEE 365
             ++       K   IESEG F  Y N VF  WD+CI  + +AR KH+ +  +I   I E
Sbjct: 255 FLMITNLMGNLKDSYIESEGMFNSYANKVFAVWDYCISEEIAARHKHRIIVQDINSDIAE 314

Query: 366 ERIKEEKQSRSRESQILMHLKRXXXXXXXXXXXXASGFLIYVAFNFSTERLNESIGSNEN 425
           E+ K   Q+R+R+ +  ++  R               F++ +   F+ E L+ +     N
Sbjct: 315 EQRKRRVQNRTRKQKCALYSSRIAVNFIVVPALWYVSFVVIIQAIFNPEDLDFTDKGQSN 374

Query: 426 RTRTMPIVYTTMSFNQLENVLMEFLPFICIVVLNLIIPEIFSYMIRYEGYMPPHXXXXXX 485
             R +       S+          L  + I + NL++P +F ++  +E +          
Sbjct: 375 MERIL------ASYGS------SLLIALAITIPNLLLPLLFEFLSIFEDWSA--EVELAL 420

Query: 486 XXXXXXXXXXXXXXXXQIYLYISTNGIVCAKHNTDTTKLE----CWETYVGQQFYKLILT 541
                            I LYI+ +     K      +LE    CWE  +  Q Y L+  
Sbjct: 421 NLWRRVFVKLPSVAALMILLYINIDKKTKKKSRNQHYRLEACEQCWEDELAAQMYMLVWM 480

Query: 542 DFAVQFVTTF-LINLPRAFMARHTRSRCLKMFGEQEFYLPKHVLDIVYVQTIIWMAMF 598
           DF V  +TT  L  L + F   + +  C +  G Q+F +P++VLD+VY Q +I +  F
Sbjct: 481 DFFVVILTTLGLETLRKVF---YNKFSCFRRIGMQQFDIPRNVLDLVYGQCLILLGGF 535


>SB_23825| Best HMM Match : C4dic_mal_tran (HMM E-Value=4.9)
          Length = 646

 Score = 86.2 bits (204), Expect = 7e-17
 Identities = 55/227 (24%), Positives = 107/227 (47%), Gaps = 19/227 (8%)

Query: 252 IQGTGWMERTILFYGVYTDQIYTYYVNSLYHTKLFYNMPMAYILVPISWTLLSLIAIVKT 311
           +QG GW+  T++FYG Y+ +I       L   +L+YNMP AY +V  +  L  L+  + +
Sbjct: 289 MQGVGWINTTLMFYGSYSAKIL------LMPDRLYYNMPFAYFVVNGACFLFVLLITLWS 342

Query: 312 AARGFKQKLIESEGQFYK-YCNLVFGGWDFCIHNDRSARIKHQALYNEIKGCIEEERIKE 370
            +  F++  ++   + Y  Y N VFG WD CI +D++A +K +    E++  + E+    
Sbjct: 343 VSSIFEESYVKEGTRHYNSYSNKVFGSWDMCIVDDQAAELKMRTFLMEVEADLAEDLRLA 402

Query: 371 EKQSRSRESQILMHLKRXXXXXXXXXXXXASGFLIYVAFNFSTERLNESIGSNENRTRTM 430
               R+R  +   +  R             +G++IY       E    S+ S ++ ++  
Sbjct: 403 SLAKRTRLEKCQTYSIRALINLVVIGLSAVAGYVIY-------EAAQLSLKSGQSSSQLS 455

Query: 431 PIVYTTMSFNQLENVLMEFLPFICIVVLNLIIPEIFSYMIRYEGYMP 477
           P      +  ++  +L  +   + + +LN ++P +F Y+   E + P
Sbjct: 456 P-----TNQKEMIELLKGYASSLTLSILNAVLPALFFYLAHLEDWNP 497



 Score = 44.8 bits (101), Expect = 2e-04
 Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 4/105 (3%)

Query: 118 PMSQKIELKARLQNATK---LRLQGFEQLHLRQRKVWHRFRIGCTETFSKLELWQTPMRE 174
           P+ +++  + RL++AT      L  F    LR      R      +T   L+LW+  ++E
Sbjct: 103 PLHERLTERKRLRSATAHDPRSLSCFTTWRLRVAMHAKRAYKKARDTVH-LDLWRGHLKE 161

Query: 175 IEGKFGTGVVSYXXXXXXXXXXXXTISILVIVFLILPKTLLTERV 219
           IEG FG G++SY             I ++ + FL++P+ + T+ +
Sbjct: 162 IEGTFGNGILSYFTFLKWLLLLNGYIFLVTLAFLVIPQAIHTQEI 206


>SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1291

 Score = 75.8 bits (178), Expect = 1e-13
 Identities = 57/235 (24%), Positives = 94/235 (40%), Gaps = 22/235 (9%)

Query: 316  FKQKLIESEGQFYKYCNLVFGGWDFCIHNDRSARIKHQALYNEIKGCIEEERIKEEKQSR 375
            F++  IE  G FY YCN  F  WD+CI ++ +AR+K Q +  +IK  + EE   E+ ++R
Sbjct: 1071 FQESYIEGGGTFYSYCNKAFASWDYCIDDENTARVKSQNIVQDIKAGLAEEARLEKVRNR 1130

Query: 376  SRESQILMHLKRXXXXXXXXXXXXASGFLIYVAFNFSTERLNESIGSNENRTRTMPIVYT 435
            +R  +  ++  R             + + IY+A   ST+   +     E ++  M I+  
Sbjct: 1131 TRGQKCRLYTIRATCTLLVMGLLGGAVYAIYLAVEVSTDPKVQ-----EGKSAFMVILIR 1185

Query: 436  TMSFNQLENVLMEFLPFICIVVLNLIIPEIFSYMIRYEGYMPPHXXXXXXXXXXXXXXXX 495
            + S              + I  LNL++P  F  +  +E + P                  
Sbjct: 1186 SAS-------------SLTITGLNLLLPPFFILVSNFEDWSPRFQVNISLWRTVLLRLAS 1232

Query: 496  XXXXXXQIYLYISTNGIVCAKHNTDTTKLECWETYVGQQFYKLILTDFAVQFVTT 550
                   +Y+ +   G  C        +   WE  +  Q Y LI  DF V   TT
Sbjct: 1233 IAVLIITLYVDV---GKKCDDGEKSCCQ-NSWENQIASQMYMLIWIDFFVVIATT 1283



 Score = 68.5 bits (160), Expect = 1e-11
 Identities = 48/157 (30%), Positives = 74/157 (47%), Gaps = 6/157 (3%)

Query: 107  EEIMQIKALPVPMSQKIELKARLQNATKLR-LQGFEQLHLRQRKVWHRFRIGCTETFSKL 165
            E+  ++KA+  PM QK E+K       K+R +  ++   L+    WHR      +    L
Sbjct: 925  EDFQEVKAVAAPMQQKREMKKNQTAGQKIRRISCWKATKLKIAMGWHRLTGRIGDALRDL 984

Query: 166  ELWQTPMREIEGKFGTGVVSYXXXXXXXXXXXXTISILVIVFLILPKTLLTERVYECDET 225
            ELW+  M+EIEG+FG GV+SY             I +L   F  +P  L++E V   + T
Sbjct: 985  ELWKGSMKEIEGRFGNGVLSYFVFLKWLMFVNLFIFLLTFGFTSVP-ALVSEPVAAPNNT 1043

Query: 226  EANSTVCCSIAYFEKNTTNSNIFLDVIQGTGWMERTI 262
              NS    +  Y +K+    ++ LD I G  + E  I
Sbjct: 1044 --NSCTYSTDTYTDKSP--PDLVLDFITGVSFQESYI 1076


>SB_57396| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 757

 Score = 66.5 bits (155), Expect = 6e-11
 Identities = 57/217 (26%), Positives = 100/217 (46%), Gaps = 27/217 (12%)

Query: 98  NLSNEERSWEEIMQIKALPVPMSQKIELKARLQNATKLRLQGFEQLHLRQRKVWHRFRIG 157
           NL +  R+ +E+    +    + Q +   A  +N +K +L  ++   LR    W  F+ G
Sbjct: 228 NLLHRNRNIKEVSTTISRKRILRQSVNAAAG-RNESKKKLSAWKSFKLRFSMGWQHFKDG 286

Query: 158 CTETFSKLELWQTPMREIEGKFGTGVVSYXXXXXXXXXXXXTISILVIVFLILPKTLLTE 217
             E    L+LW+  ++ I+GKFG+GV+SY             I+ L + FL +P+     
Sbjct: 287 TKEMLYSLDLWRGHLKVIQGKFGSGVLSYFVLLRWLFLLNVLITTLTLFFLFIPQI---- 342

Query: 218 RVYECDETEANSTVCCSIAYFEKNTTNSNIFLDVIQGTGWMERTILFYGVYTDQIYTYYV 277
            VY             S  Y +++ T     +++I G G+   +  +YG YT+  +T  +
Sbjct: 343 -VYN-----------PSTKYNQESFTG----VELITGDGYFTNSEAYYGWYTN--HTIGM 384

Query: 278 NSLYHTKLFYNMPMAYILVPISWTLLSLIAIVKTAAR 314
            S     L Y MP+AY+ V  ++ LL L  ++ +  R
Sbjct: 385 GS----GLVYKMPLAYLCVGGAYLLLCLAILIYSTDR 417



 Score = 63.3 bits (147), Expect = 5e-10
 Identities = 41/161 (25%), Positives = 68/161 (42%), Gaps = 6/161 (3%)

Query: 439 FNQL--ENVLMEFLPFICIVVLNLIIPEIFSYMIRYEGYMPPHXXXXXXXXXXXXXXXXX 496
           FN L  +  L + L  I +  LN ++P  F  +   E Y  P                  
Sbjct: 598 FNDLKTDETLKKLLLPIVVSGLNFVLPMTFRIIASLEAYKHPRSAIQISLARTALLKLVS 657

Query: 497 XXXXX-QIYLYIST--NGIVCAKHNTDTTKLECWETYVGQQFYKLILTDFAVQFVTTFLI 553
                  ++L +S    G+   K    +   +CWETY+G  FY+L++ DF    +++F  
Sbjct: 658 LGMILVSLFLDVSRCRQGLPLGKDKCLSLMKQCWETYIGIVFYRLVIVDFVFLLLSSFFG 717

Query: 554 NLPRAFMARHTRSRCLKMFGEQEFYLPKHVLDIVYVQTIIW 594
              R  +A +    C    G   F + ++VLD+VY Q++ W
Sbjct: 718 EFIRRIVADNI-GWCKMKVGPPGFDISRNVLDLVYAQSLCW 757



 Score = 42.7 bits (96), Expect = 8e-04
 Identities = 15/56 (26%), Positives = 35/56 (62%)

Query: 305 LIAIVKTAARGFKQKLIESEGQFYKYCNLVFGGWDFCIHNDRSARIKHQALYNEIK 360
           ++ ++ + A  ++   I +  +F  Y + VF  WD+CI N  +A++K ++++N++K
Sbjct: 547 MVRLMVSMAESYRDNYIYAGDEFSFYTSKVFCSWDYCITNIDAAKLKEKSIFNDLK 602


>SB_10482| Best HMM Match : TMC (HMM E-Value=0.03)
          Length = 57

 Score = 34.3 bits (75), Expect = 0.29
 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 538 LILTDFAVQFVTTFLINLPRAFMARHTRSRCLKMFGEQEFYLPKHVLDIVYVQTII 593
           LI  DF V   TT  +      + +HTR    K+    EF +PK+VLD+VY Q ++
Sbjct: 2   LIWIDFFVVIATTLGMETILRLLFKHTRL-FRKLNVMPEFQIPKNVLDLVYGQCLL 56


>SB_29004| Best HMM Match : TMC (HMM E-Value=2.7e-14)
          Length = 119

 Score = 34.3 bits (75), Expect = 0.29
 Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 1/37 (2%)

Query: 562 RHTRSRCLKMFGEQEFYLPKHVLDIVYVQTIIWMAMF 598
           +HTR    K+    EF +PK+VLD+VY Q ++W+  F
Sbjct: 5   KHTRL-FRKLNVMPEFQIPKNVLDLVYGQCLLWIGTF 40


>SB_30352| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 124

 Score = 33.5 bits (73), Expect = 0.51
 Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 4/76 (5%)

Query: 41  LQRADAAKLATLLPSKQARNTTTVKRARSQTDRRQSTFARTMQSRD--IHLSMLPDLSEN 98
           + RA  ++  T+LPS ++ N   V+R + +   R       + SRD   H  M  DL+++
Sbjct: 20  ISRAPNSRQVTILPSSRSPNAAFVRRVQKRL--RDWVPEVFIHSRDTITHSKMAIDLNKH 77

Query: 99  LSNEERSWEEIMQIKA 114
            S  +++W++I   K+
Sbjct: 78  RSELQKTWQDIFDGKS 93


>SB_59015| Best HMM Match : Arif-1 (HMM E-Value=0.62)
          Length = 526

 Score = 33.1 bits (72), Expect = 0.67
 Identities = 18/68 (26%), Positives = 39/68 (57%), Gaps = 7/68 (10%)

Query: 243 TNSNIFLDVIQGTGWMERTILFYGVYTDQIYTYYVNSLYHTKLFYNMPMAYILVPISWTL 302
           ++++  + +I   G +E + LFYG Y+++       SL    + Y +P+AYI+V +   +
Sbjct: 379 SSASSLIAIIDAKGHLEYSFLFYGYYSNK-------SLQIGNVRYPLPLAYIVVFLGTYV 431

Query: 303 LSLIAIVK 310
            S++ I++
Sbjct: 432 FSVLTILR 439


>SB_26103| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1176

 Score = 32.7 bits (71), Expect = 0.89
 Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 1/85 (1%)

Query: 47  AKLATLLPSKQARNTTTVKRARSQTDRRQSTFARTMQSRDIHLSMLPDLSENLSNEERSW 106
           AKL  ++ +++       KR  S  D       +  +  + +    PDL +  + +ER  
Sbjct: 784 AKLEQMIDARKEPKIRWEKRLGSVIDLNDPALTKLEEEFE-NPKAEPDLEKLAALQERIL 842

Query: 107 EEIMQIKALPVPMSQKIELKARLQN 131
           + + Q+KA+P  +  KIE K +  N
Sbjct: 843 KVLSQVKAIPAEVKDKIETKFKRHN 867


>SB_49663| Best HMM Match : TolA (HMM E-Value=0.059)
          Length = 591

 Score = 31.5 bits (68), Expect = 2.1
 Identities = 31/116 (26%), Positives = 48/116 (41%), Gaps = 7/116 (6%)

Query: 34  EQELFDNLQRADAAKLATLLPSKQARNTTTVKRARSQTDRRQSTFARTMQSRD-IHLSML 92
           E+EL +  Q AD+  LA + P            A+ Q    +   A  +Q R+ ++  M 
Sbjct: 124 EEELNEEKQNADSMALAVISPDVNDTTMALEVAAQQQIKELEKKQAAKIQHREALYAEMR 183

Query: 93  PDLSENLS-----NEERSWEEIMQIKALPVPM-SQKIELKARLQNATKLRLQGFEQ 142
               E +S      E R  E I + K + V   +Q+  LK  LQ   K  +Q  E+
Sbjct: 184 KKEEERMSRERKERERRQQEFIKEQKDVAVQQKAQQESLKETLQEQEKETIQQLEE 239


>SB_18574| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 157

 Score = 30.3 bits (65), Expect = 4.7
 Identities = 16/66 (24%), Positives = 32/66 (48%)

Query: 46  AAKLATLLPSKQARNTTTVKRARSQTDRRQSTFARTMQSRDIHLSMLPDLSENLSNEERS 105
           AAK A    + ++   +   +     ++ +S  A   +   IH S+L DL++ +  +ER+
Sbjct: 61  AAKTANTASNAKSEGISDTAKDLLDFNKNESKAAEPEEQHSIHESLLDDLAKPIDTKERT 120

Query: 106 WEEIMQ 111
            E + Q
Sbjct: 121 AEPVNQ 126


>SB_45179| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 277

 Score = 29.9 bits (64), Expect = 6.3
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 2/65 (3%)

Query: 18  WEEAGGEFYQELYPGGEQ--ELFDNLQRADAAKLATLLPSKQARNTTTVKRARSQTDRRQ 75
           W  +  E  QEL+   ++  + F+  +++      +L  +KQ+   +  KR RS+T RR+
Sbjct: 190 WRASDDEILQELHKQRKEMKQSFEEAKQSFEEAKQSLKEAKQSFEGSETKRRRSETKRRR 249

Query: 76  STFAR 80
           S   R
Sbjct: 250 SETKR 254


>SB_24046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2848

 Score = 29.9 bits (64), Expect = 6.3
 Identities = 25/104 (24%), Positives = 53/104 (50%), Gaps = 6/104 (5%)

Query: 65   KRARSQTDRRQSTFARTMQSRDIHLSMLPDLSENLSNEERSWEEIMQIK--ALPVPMSQK 122
            ++ R + +RR +   +   +++ HL      ++ L   ++++EE ++ +  AL   ++++
Sbjct: 1690 RQKREEEERRVAEMEQVKVAQEQHL--YAQETDELEQLKKTYEERIEREKGALEASIARR 1747

Query: 123  IELKARLQNATKLRLQGFEQLHLRQRKVWHRFRIGCTETFSKLE 166
             E + R + A +   +  EQL LRQ  +  R R G  E + K E
Sbjct: 1748 KEEERRAEEAARRLQESQEQLQLRQEALRIRKRQG--EAYEKEE 1789


>SB_56637| Best HMM Match : 7tm_1 (HMM E-Value=3.7e-06)
          Length = 269

 Score = 29.5 bits (63), Expect = 8.3
 Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 6/44 (13%)

Query: 431 PIVYTTM-----SFNQLENVLMEFLPFICIVVLNLIIPEIFSYM 469
           P++Y T+     SFN + N+L+   PF  IV+ +L  P I+S+M
Sbjct: 158 PVLYYTIAAVLGSFNSVPNILVTLSPFF-IVIGSLANPLIYSFM 200


>SB_1063| Best HMM Match : COLFI (HMM E-Value=0)
          Length = 216

 Score = 29.5 bits (63), Expect = 8.3
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 323 SEGQFYKYCNLVFGGWDFCIHNDRSARIKHQALYNEIKG 361
           SE     +CN   GG + CIH D+  R   +  ++++KG
Sbjct: 56  SEDAIEVFCNFTSGG-ETCIHPDKRTRTGERKHWSKVKG 93


>SB_47699| Best HMM Match : 7tm_1 (HMM E-Value=6.6e-23)
          Length = 335

 Score = 29.5 bits (63), Expect = 8.3
 Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 6/44 (13%)

Query: 431 PIVYTTM-----SFNQLENVLMEFLPFICIVVLNLIIPEIFSYM 469
           P++Y T+     SFN + N+L+   PF  IV+ +L  P I+S+M
Sbjct: 224 PVLYYTIAAVLGSFNSVPNILVTLSPFF-IVIGSLANPLIYSFM 266


>SB_7268| Best HMM Match : DUF472 (HMM E-Value=0.99)
          Length = 554

 Score = 29.5 bits (63), Expect = 8.3
 Identities = 16/66 (24%), Positives = 30/66 (45%)

Query: 46  AAKLATLLPSKQARNTTTVKRARSQTDRRQSTFARTMQSRDIHLSMLPDLSENLSNEERS 105
           AAK A    + +    +   +     +  +S      +   IH S+L DL+++L  +ER+
Sbjct: 61  AAKTANTASNAKPEGVSDTAKDLLDFNNNESKAEEPKEQHSIHESLLDDLAKSLDTKERT 120

Query: 106 WEEIMQ 111
            E + Q
Sbjct: 121 AEPVNQ 126


>SB_6742| Best HMM Match : EGF_CA (HMM E-Value=5.40004e-41)
          Length = 653

 Score = 29.5 bits (63), Expect = 8.3
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 315 GFKQKLIESEGQFYKYCNLVFG-GWDFCIHNDRSARIKHQALYNEIKGC 362
           GF+ K + S    ++YC ++    W F  HN    R +HQ      K C
Sbjct: 79  GFQGKNVSSFDHHHRYCIIIVTVSWSFDHHNHHRRRRRHQHHKCLFKSC 127


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.324    0.137    0.414 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,739,251
Number of Sequences: 59808
Number of extensions: 663568
Number of successful extensions: 2185
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 2147
Number of HSP's gapped (non-prelim): 35
length of query: 612
length of database: 16,821,457
effective HSP length: 86
effective length of query: 526
effective length of database: 11,677,969
effective search space: 6142611694
effective search space used: 6142611694
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 63 (29.5 bits)

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