GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000052-TA|BGIBMGA000052-PA|IPR012338|Penicillin-binding
protein, transpeptidase fold, IPR012464|Protein of unknown function
DUF1676
         (222 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014297-432|AAN13237.1|  278|Drosophila melanogaster CG31561-PA...    53   4e-07
AE014297-424|AAF51898.1|  302|Drosophila melanogaster CG15596-PA...    29   6.8  

>AE014297-432|AAN13237.1|  278|Drosophila melanogaster CG31561-PA
           protein.
          Length = 278

 Score = 52.8 bits (121), Expect = 4e-07
 Identities = 20/77 (25%), Positives = 46/77 (59%)

Query: 4   LSFLEDLSSREELHLLPGLSIIRXXXXXXXXXXXXXXXLSKQYPGNPEEKLNRFLLYRLQ 63
           +  +E L+ +EEL++LPG+S+++               +++ YP +P  +LN +++ +L+
Sbjct: 69  VKIMEKLAEQEELNVLPGISVVKDENATELKTSELMAEVARSYPSDPSTRLNGYIVAKLE 128

Query: 64  DYLDGHSLKYKLLDPQT 80
           + L    L+++LLD ++
Sbjct: 129 NLLRTRFLRFRLLDDKS 145



 Score = 28.7 bits (61), Expect = 6.8
 Identities = 14/22 (63%), Positives = 16/22 (72%), Gaps = 2/22 (9%)

Query: 159 VGLKG--HGGHKSTTYEIITKP 178
           +GLK    GG KSTTYEI+ KP
Sbjct: 203 LGLKSLAGGGGKSTTYEIVAKP 224


>AE014297-424|AAF51898.1|  302|Drosophila melanogaster CG15596-PA
           protein.
          Length = 302

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 3/25 (12%)

Query: 159 VGLK---GHGGHKSTTYEIITKPEV 180
           +GLK   GH G + TTYEI+  P+V
Sbjct: 220 IGLKKLVGHDGGEKTTYEIVKHPQV 244


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.316    0.136    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,679,805
Number of Sequences: 52641
Number of extensions: 166590
Number of successful extensions: 261
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 258
Number of HSP's gapped (non-prelim): 3
length of query: 222
length of database: 24,830,863
effective HSP length: 82
effective length of query: 140
effective length of database: 20,514,301
effective search space: 2872002140
effective search space used: 2872002140
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 60 (28.3 bits)