GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000074-TA|BGIBMGA000074-PA|IPR000692|Fibrillarin
         (315 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78413-7|CAB01657.1|  352|Caenorhabditis elegans Hypothetical pr...   380   e-106
Z81063-5|CAB02955.1|  209|Caenorhabditis elegans Hypothetical pr...    30   1.9  
AL110500-12|CAB60432.1|  362|Caenorhabditis elegans Hypothetical...    28   10.0 
AF106576-1|AAC78177.2|  664|Caenorhabditis elegans Hypothetical ...    28   10.0 

>Z78413-7|CAB01657.1|  352|Caenorhabditis elegans Hypothetical
           protein T01C3.7 protein.
          Length = 352

 Score =  380 bits (936), Expect = e-106
 Identities = 174/230 (75%), Positives = 204/230 (88%)

Query: 82  VIIEPHRHPGVFIARGKEDALVTKNLVPGSEVYGEKRISVENEGDKVEYRVWNPFRSKLA 141
           V++EPHR  GVFI +GKEDAL TKN+V G  VYGEKR+SV++    +EYRVWNPFRSKLA
Sbjct: 117 VVVEPHRLGGVFIVKGKEDALATKNMVVGESVYGEKRVSVDDGAGSIEYRVWNPFRSKLA 176

Query: 142 AAIMGGVDAIHMAPGSRVLYLGAASGTTVSHVSDVVGPEGLVYAVEFSHRSGRDLINVAK 201
           A+IMGG++  H+ PG+++LYLGAASGTTVSH SDVVGPEG+VYAVEFSHRSGRDL+ VAK
Sbjct: 177 ASIMGGLENTHIKPGTKLLYLGAASGTTVSHCSDVVGPEGIVYAVEFSHRSGRDLLGVAK 236

Query: 202 KRTNIIPIIEDARHPLKYRMLVGMVDTIFADVAQPDQARIVSLNAQHFLKNGGHFVISIK 261
           KR N++PI+EDARHP KYRMLVGMVD IF+DVAQPDQARIV+LNAQ+FL+NGGH VISIK
Sbjct: 237 KRPNVVPIVEDARHPHKYRMLVGMVDVIFSDVAQPDQARIVALNAQNFLRNGGHAVISIK 296

Query: 262 ASCIDSTAQPEAVFAAEVKKLQADKLKPQEQLTLEPYERDHAVVVGVFRP 311
           A+CIDSTA+PEAVFA EV KL+ +K KP EQ+TLEPYERDHAVVV V+RP
Sbjct: 297 ANCIDSTAEPEAVFAGEVNKLKEEKFKPLEQVTLEPYERDHAVVVAVYRP 346


>Z81063-5|CAB02955.1|  209|Caenorhabditis elegans Hypothetical
           protein F15D3.6 protein.
          Length = 209

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 27/96 (28%), Positives = 40/96 (41%), Gaps = 2/96 (2%)

Query: 152 HMAPGSRVLYLGAASGTTVSHVSDVVGPEGLVYAVEFSHRSGRDLINVAKKRTNIIPIIE 211
           H +  S    L   SGT  SH   V+ P    +++   + +G   + V +K T   P  E
Sbjct: 57  HFSIPSWATKLTGFSGTQYSHEYTVIDPTRKEFSLTTRNLNGSSFLRVDEKLT-YTPAHE 115

Query: 212 DARHP-LKYRMLVGMVDTIFADVAQPDQARIVSLNA 246
           D     LK  ++V +    FAD  +     I S NA
Sbjct: 116 DPNKTILKQDVIVTITLPAFADYCEKTFLSIYSQNA 151


>AL110500-12|CAB60432.1|  362|Caenorhabditis elegans Hypothetical
           protein Y87G2A.11 protein.
          Length = 362

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 12/42 (28%), Positives = 20/42 (47%)

Query: 106 NLVPGSEVYGEKRISVENEGDKVEYRVWNPFRSKLAAAIMGG 147
           N+  G E+    +I +ENE D++    W+P        + GG
Sbjct: 145 NMENGPEIVQNLKIPLENEEDEMFSATWSPHHDGNMLGVTGG 186


>AF106576-1|AAC78177.2|  664|Caenorhabditis elegans Hypothetical
           protein W07E6.1 protein.
          Length = 664

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 15/50 (30%), Positives = 28/50 (56%)

Query: 148 VDAIHMAPGSRVLYLGAASGTTVSHVSDVVGPEGLVYAVEFSHRSGRDLI 197
           V A+   PG RVL + +A G   SH++ ++   G+++A + +    R +I
Sbjct: 298 VMALAPQPGDRVLDMCSAPGGKTSHIAALMKNSGVLFANDANFTRCRAII 347


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.319    0.136    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,942,360
Number of Sequences: 27539
Number of extensions: 218446
Number of successful extensions: 522
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 518
Number of HSP's gapped (non-prelim): 5
length of query: 315
length of database: 12,573,161
effective HSP length: 81
effective length of query: 234
effective length of database: 10,342,502
effective search space: 2420145468
effective search space used: 2420145468
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)