GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000082-TA|BGIBMGA000082-PA|IPR004000|Actin/actin-like
         (388 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.             116   3e-28

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score =  116 bits (279), Expect = 3e-28
 Identities = 60/145 (41%), Positives = 86/145 (59%), Gaps = 12/145 (8%)

Query: 230 EQRLALETTVLVEPYTLPDGRVIKVGGERFEAPEALFQPHLINVEGQGIAELVFNTIQAA 289
           E   A  ++ L + Y LPDG+VI +G ERF  PEALFQP  + +E  GI E  +N+I   
Sbjct: 1   EMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKC 60

Query: 290 DIDMRNELYKHIVLSGGSTMYPGLPSRLEREIKQLYLERVLRNECDKLSKFKIRVEDPPR 349
           D+D+R +LY + VLSGG+TMYPG+  R+++EI  L             S  KI++  PP 
Sbjct: 61  DVDIRKDLYANTVLSGGTTMYPGIADRMQKEITAL-----------APSTMKIKIIAPPE 109

Query: 350 RKDMVFIGGAVLAEVCKNRDNFWLS 374
           +K  V+IGG++LA +       W+S
Sbjct: 110 KKYSVWIGGSILASL-STFQQMWIS 133


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.139    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,221
Number of Sequences: 429
Number of extensions: 4820
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 1
length of query: 388
length of database: 140,377
effective HSP length: 59
effective length of query: 329
effective length of database: 115,066
effective search space: 37856714
effective search space used: 37856714
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 45 (22.2 bits)