GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000003-TA|BGIBMGA000003-PA|undefined
         (69 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    21   1.8  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    20   3.2  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    19   5.5  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    19   5.5  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              18   9.7  

>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 6/10 (60%), Positives = 9/10 (90%)

Query: 20  VYFLSWLQYM 29
           VYF++WL Y+
Sbjct: 363 VYFITWLGYV 372


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 19.8 bits (39), Expect = 3.2
 Identities = 11/45 (24%), Positives = 23/45 (51%)

Query: 8   VALVEEDGAPLFVYFLSWLQYMLLFVKISGIPQAEYESSTDVLPE 52
           +A + ++   L  Y L+    +LL   I+G+ +  ++ +   LPE
Sbjct: 398 IARILDEPIELSGYRLTAGTVVLLHTWIAGLNEENFKDAKKYLPE 442


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated
          chloride channel protein.
          Length = 428

 Score = 19.0 bits (37), Expect = 5.5
 Identities = 7/19 (36%), Positives = 12/19 (63%)

Query: 48 DVLPEDLDTFDLLQRARLD 66
          D+LPED   +D ++  + D
Sbjct: 39 DLLPEDPKLYDKMRPPKKD 57


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 19.0 bits (37), Expect = 5.5
 Identities = 6/10 (60%), Positives = 7/10 (70%)

Query: 19  FVYFLSWLQY 28
           F+Y LSW  Y
Sbjct: 281 FLYVLSWTPY 290


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 10/30 (33%), Positives = 15/30 (50%)

Query: 22  FLSWLQYMLLFVKISGIPQAEYESSTDVLP 51
           F S+ Q+ +L  + S         STDV+P
Sbjct: 506 FFSFHQWGILVYEPSACRPRHEIRSTDVIP 535


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.323    0.140    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,265
Number of Sequences: 429
Number of extensions: 650
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 69
length of database: 140,377
effective HSP length: 45
effective length of query: 24
effective length of database: 121,072
effective search space:  2905728
effective search space used:  2905728
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (19.1 bits)
S2: 35 (18.2 bits)