GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000090-TA|BGIBMGA000090-PA|IPR002000|Lysosome-associated
membrane glycoprotein (Lamp)/CD68
         (275 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g52620.1 68414.m05941 pentatricopeptide (PPR) repeat-containi...    31   0.64 
At3g23620.1 68416.m02971 brix domain-containing protein contains...    30   1.5  

>At1g52620.1 68414.m05941 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 819

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 1/67 (1%)

Query: 96  NANVGGACKDGDAETLVLSFKDFTLEWFFAKTPG-GERWYAESMKLSYNSSSRILEHAAN 154
           N  +GG CK GD E   L FK+  L+ F       G        +  + +S R+L     
Sbjct: 244 NTIIGGYCKLGDIENAYLVFKELKLKGFMPTLETFGTMINGFCKEGDFVASDRLLSEVKE 303

Query: 155 QGRRVTL 161
           +G RV++
Sbjct: 304 RGLRVSV 310


>At3g23620.1 68416.m02971 brix domain-containing protein contains
          Pfam domain, PF04427: Brix domain
          Length = 314

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/39 (35%), Positives = 23/39 (58%)

Query: 24 TRRPRVTKYSKTTIAPGGSTESVTERSLVTATYRLQGGG 62
          +R P++ +  K T+   G+  S T  S++T  YRL+ GG
Sbjct: 18 SRAPKLVETGKKTLILHGTKTSATLSSVMTELYRLKKGG 56


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.319    0.132    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,838,332
Number of Sequences: 28952
Number of extensions: 227745
Number of successful extensions: 558
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 556
Number of HSP's gapped (non-prelim): 2
length of query: 275
length of database: 12,070,560
effective HSP length: 80
effective length of query: 195
effective length of database: 9,754,400
effective search space: 1902108000
effective search space used: 1902108000
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 59 (27.9 bits)