GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000077-TA|BGIBMGA000077-PA|undefined
         (224 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g33630.2 68417.m04778 expressed protein                             33   0.12 
At4g33630.1 68417.m04777 expressed protein                             33   0.12 
At1g07440.1 68414.m00794 tropinone reductase, putative / tropine...    31   0.63 
At5g15380.1 68418.m01799 cytosine methyltransferase, putative si...    30   1.5  
At1g11900.1 68414.m01372 pentatricopeptide (PPR) repeat-containi...    29   2.6  
At3g56060.1 68416.m06229 glucose-methanol-choline (GMC) oxidored...    27   7.8  

>At4g33630.2 68417.m04778 expressed protein
          Length = 684

 Score = 33.5 bits (73), Expect = 0.12
 Identities = 18/56 (32%), Positives = 34/56 (60%), Gaps = 5/56 (8%)

Query: 48  GSRQKRRRVEQIYQSLSSSPDEIKATTIASLRNTGNEDVGEIMNHLLNHPEDLEKV 103
           GSRQ RRR+E I   L+ S ++ K  ++  L+     DVGE+++  L+  ++ +++
Sbjct: 472 GSRQSRRRIENIMGDLAKSIEKEKKISVKMLK-----DVGELLSLTLSQAQNRQQL 522


>At4g33630.1 68417.m04777 expressed protein
          Length = 684

 Score = 33.5 bits (73), Expect = 0.12
 Identities = 18/56 (32%), Positives = 34/56 (60%), Gaps = 5/56 (8%)

Query: 48  GSRQKRRRVEQIYQSLSSSPDEIKATTIASLRNTGNEDVGEIMNHLLNHPEDLEKV 103
           GSRQ RRR+E I   L+ S ++ K  ++  L+     DVGE+++  L+  ++ +++
Sbjct: 472 GSRQSRRRIENIMGDLAKSIEKEKKISVKMLK-----DVGELLSLTLSQAQNRQQL 522


>At1g07440.1 68414.m00794 tropinone reductase, putative / tropine
           dehydrogenase, putative similar to tropinone reductase
           SP:P50165 from [Datura stramonium]
          Length = 266

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 1/74 (1%)

Query: 134 WQYINLREAASENGSDLYPSYYKIKQEKTKCYPGKEDIIITEEGAAIKMQALLNLTVSRL 193
           WQ    +   S   + L P   K+ Q  +  + GK DI+I   G AI+ +  L+ T    
Sbjct: 58  WQKKGFQVTGSVCDASLRPEREKLMQTVSSMFGGKLDILINNLG-AIRSKPTLDYTAEDF 116

Query: 194 LDVITLDLDSAREL 207
              I+ +L+SA  L
Sbjct: 117 SFHISTNLESAYHL 130


>At5g15380.1 68418.m01799 cytosine methyltransferase, putative
           similar to cytosine methyltransferase [Arabidopsis
           thaliana] GI:7658293; contains Pfam profile PF00627:
           UBA/TS-N domain
          Length = 624

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 14/31 (45%), Positives = 23/31 (74%), Gaps = 1/31 (3%)

Query: 75  IASLRNTGNEDVGEIMNHLLNHPEDLEKVKE 105
           I +++  G+EDVGEI N LL + E ++K++E
Sbjct: 128 IKAMQEHGDEDVGEITNALLTYAE-VDKLRE 157


>At1g11900.1 68414.m01372 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 367

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 12/27 (44%), Positives = 17/27 (62%)

Query: 77  SLRNTGNEDVGEIMNHLLNHPEDLEKV 103
           SL NTG ED  E++  ++NH E   K+
Sbjct: 41  SLINTGEEDEEELLKKIVNHSESGSKI 67


>At3g56060.1 68416.m06229 glucose-methanol-choline (GMC)
           oxidoreductase family protein similar to mandelonitrile
           lyase from Prunus serotina [SP|P52706, SP|P52707];
           contains Pfam profile PF00732 GMC oxidoreductase
          Length = 577

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 14/32 (43%), Positives = 17/32 (53%)

Query: 78  LRNTGNEDVGEIMNHLLNHPEDLEKVKECLST 109
           LRNT  +D   +  +    PEDL K  E LST
Sbjct: 420 LRNTNPDDNPSVTFNYFKDPEDLNKCVEGLST 451


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.310    0.129    0.359 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,614,024
Number of Sequences: 28952
Number of extensions: 159716
Number of successful extensions: 368
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 362
Number of HSP's gapped (non-prelim): 7
length of query: 224
length of database: 12,070,560
effective HSP length: 78
effective length of query: 146
effective length of database: 9,812,304
effective search space: 1432596384
effective search space used: 1432596384
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 58 (27.5 bits)