Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000058-TA|BGIBMGA000058-PA|undefined
(305 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g30420.1 68416.m03847 hypothetical protein low similarity to ... 57 2e-08
At1g54430.1 68414.m06209 hypothetical protein 56 2e-08
At1g35940.1 68414.m04463 AT hook motif-containing protein-relate... 56 3e-08
At3g30560.1 68416.m03867 hypothetical protein 54 1e-07
At5g34960.1 68418.m04125 hypothetical protein includes At5g34960... 54 2e-07
At3g42100.1 68416.m04322 AT hook motif-containing protein-relate... 53 2e-07
At3g31980.1 68416.m04050 hypothetical protein low similarity to ... 53 3e-07
At1g52960.1 68414.m05990 hypothetical protein very low similarit... 51 8e-07
At3g13250.1 68416.m01668 hypothetical protein low similarity to ... 51 1e-06
At1g64410.1 68414.m07301 hypothetical protein 51 1e-06
At4g03916.1 68417.m00552 hypothetical protein low similarity to ... 49 4e-06
At5g32070.1 68418.m03689 hypothetical protein 48 6e-06
At5g28780.1 68418.m03538 hypothetical protein various predicted ... 46 2e-05
At3g51700.1 68416.m05669 expressed protein 46 2e-05
At3g43350.1 68416.m04582 helicase-related low similarity to SP|Q... 46 3e-05
At3g51690.1 68416.m05668 hypothetical protein low similarity to ... 45 6e-05
At5g37110.1 68418.m04454 hypothetical protein 44 2e-04
At4g03690.1 68417.m00504 hypothetical protein very low similarit... 40 0.002
At5g29624.1 68418.m03640 DC1 domain-containing protein contains ... 30 2.2
At5g44770.1 68418.m05487 DC1 domain-containing protein contains ... 28 9.0
At4g13930.1 68417.m02156 glycine hydroxymethyltransferase, putat... 28 9.0
At1g27180.1 68414.m03311 disease resistance protein (TIR-NBS-LRR... 28 9.0
At1g27170.1 68414.m03310 disease resistance protein (TIR-NBS-LRR... 28 9.0
>At3g30420.1 68416.m03847 hypothetical protein low similarity to
SP|Q9UUA2 DNA repair and recombination protein pif1,
mitochondrial precursor {Schizosaccharomyces pombe}
Length = 837
Score = 56.8 bits (131), Expect = 2e-08
Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
Query: 211 HQGDHSVFTSGFAGVQCNGMHAIYPKAIQFPAKFNYG-TAERRMLPLVLSWASTVHKKQG 269
H GD + + + P+ I P + T RR P+ + +A TV+K QG
Sbjct: 711 HLGDKVLKAEILSDTTKKRKKVLIPRIILSPQDSKHPFTLRRRQFPVRMCYAMTVNKSQG 770
Query: 270 STVDHAVVYLGSKLFEEGQAYVALSRVKSLEGLSM 304
T++ +YL +F GQ YVALSRV S +GL++
Sbjct: 771 QTLNRVALYLPKPVFSHGQLYVALSRVTSPKGLTV 805
>At1g54430.1 68414.m06209 hypothetical protein
Length = 1639
Score = 56.4 bits (130), Expect = 2e-08
Identities = 31/95 (32%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
Query: 211 HQGDHSVFTSGFAGVQCNGMHAIYPKAIQFPAKFNYG-TAERRMLPLVLSWASTVHKKQG 269
H GD + + + P+ I P + T RR P+ + +A T++K QG
Sbjct: 1513 HLGDKVLKAEILSDTTKERKKVLIPRIILSPQDSKHPFTLRRRQFPVRMCYAMTINKSQG 1572
Query: 270 STVDHAVVYLGSKLFEEGQAYVALSRVKSLEGLSM 304
T++ +YL +F GQ YVALSRV S +GL++
Sbjct: 1573 QTLNRVALYLPKPVFSHGQLYVALSRVTSPKGLTV 1607
>At1g35940.1 68414.m04463 AT hook motif-containing protein-related
very low similarity to SP|Q9UUA2 DNA repair and
recombination protein pif1, mitochondrial precursor
{Schizosaccharomyces pombe}; contains weak hit to
PF02178: AT hook motif
Length = 1678
Score = 56.0 bits (129), Expect = 3e-08
Identities = 25/54 (46%), Positives = 37/54 (68%)
Query: 251 RRMLPLVLSWASTVHKKQGSTVDHAVVYLGSKLFEEGQAYVALSRVKSLEGLSM 304
RR PL +++A T++K QG +++H +YL +F GQ YVALSRV S +GL +
Sbjct: 1599 RRQFPLSVAFAMTINKSQGQSLEHIGLYLPKPVFSHGQLYVALSRVTSKKGLKI 1652
>At3g30560.1 68416.m03867 hypothetical protein
Length = 1473
Score = 54.0 bits (124), Expect = 1e-07
Identities = 24/55 (43%), Positives = 37/55 (67%)
Query: 250 ERRMLPLVLSWASTVHKKQGSTVDHAVVYLGSKLFEEGQAYVALSRVKSLEGLSM 304
+RR PL +++A T++K QG ++ + +YL +F GQ YVA+SRVKS GL +
Sbjct: 1394 KRRQFPLSVAFAMTINKSQGQSLGNVGIYLPKPVFSHGQLYVAMSRVKSKGGLKV 1448
>At5g34960.1 68418.m04125 hypothetical protein includes At5g34960,
At2g14450, At1g35920
Length = 1033
Score = 53.6 bits (123), Expect = 2e-07
Identities = 24/52 (46%), Positives = 35/52 (67%)
Query: 251 RRMLPLVLSWASTVHKKQGSTVDHAVVYLGSKLFEEGQAYVALSRVKSLEGL 302
RR PL +++A T++ QG +++H +YL +F GQ YVALSRV S +GL
Sbjct: 954 RRQFPLSVAFAMTINTSQGQSLEHVGLYLPKAVFSHGQLYVALSRVTSKKGL 1005
>At3g42100.1 68416.m04322 AT hook motif-containing protein-related
very low similarity to SP|Q9UUA2 DNA repair and
recombination protein pif1, mitochondrial precursor
{Schizosaccharomyces pombe}; weak hit to Pfam profile
PF02178: AT hook motif
Length = 1752
Score = 53.2 bits (122), Expect = 2e-07
Identities = 24/54 (44%), Positives = 36/54 (66%)
Query: 251 RRMLPLVLSWASTVHKKQGSTVDHAVVYLGSKLFEEGQAYVALSRVKSLEGLSM 304
RR PL +++A T++K QG +++ +YL +F GQ YVALSRV S +GL +
Sbjct: 1673 RRQFPLSVAFAMTINKSQGQSLEQVGLYLPKPVFSHGQLYVALSRVTSKKGLKI 1726
>At3g31980.1 68416.m04050 hypothetical protein low similarity to
SP|P07271 DNA repair and recombination protein PIF1,
mitochondrial precursor {Saccharomyces cerevisiae}
Length = 1099
Score = 52.8 bits (121), Expect = 3e-07
Identities = 23/54 (42%), Positives = 35/54 (64%)
Query: 251 RRMLPLVLSWASTVHKKQGSTVDHAVVYLGSKLFEEGQAYVALSRVKSLEGLSM 304
RR P+ +++A T++K QG ++ +YL +F GQ YVALSRV S +GL +
Sbjct: 1019 RRQFPIAVAFAMTINKSQGQSLKEVGIYLPKPVFSHGQLYVALSRVTSKKGLKV 1072
>At1g52960.1 68414.m05990 hypothetical protein very low similarity
to SP|Q9UUA2 DNA repair and recombination protein pif1,
mitochondrial precursor {Schizosaccharomyces pombe}
Length = 996
Score = 51.2 bits (117), Expect = 8e-07
Identities = 23/55 (41%), Positives = 34/55 (61%)
Query: 251 RRMLPLVLSWASTVHKKQGSTVDHAVVYLGSKLFEEGQAYVALSRVKSLEGLSMY 305
RR PL +++A T++K QG T++ +YL +F GQ YVA+SRV S G +
Sbjct: 942 RRQFPLSVAFAMTINKSQGQTLESVGLYLPRPVFSHGQLYVAISRVTSKTGTKFF 996
>At3g13250.1 68416.m01668 hypothetical protein low similarity to
SP|P07271 DNA repair and recombination protein PIF1,
mitochondrial precursor {Saccharomyces cerevisiae}
Length = 1419
Score = 50.8 bits (116), Expect = 1e-06
Identities = 23/54 (42%), Positives = 34/54 (62%)
Query: 251 RRMLPLVLSWASTVHKKQGSTVDHAVVYLGSKLFEEGQAYVALSRVKSLEGLSM 304
RR PL +++ T++K QG +++ +YL +F GQ YVALSRV S GL +
Sbjct: 1341 RRQFPLSVAFVMTINKSQGQSLEQVGLYLPKPVFSHGQLYVALSRVTSKTGLKI 1394
>At1g64410.1 68414.m07301 hypothetical protein
Length = 1231
Score = 50.8 bits (116), Expect = 1e-06
Identities = 23/54 (42%), Positives = 35/54 (64%)
Query: 251 RRMLPLVLSWASTVHKKQGSTVDHAVVYLGSKLFEEGQAYVALSRVKSLEGLSM 304
RR PL +++A T++K QG T++ +YL +F GQ YVA+SRV S G ++
Sbjct: 1158 RRQFPLSVAFAMTINKSQGQTLESVGLYLPRPVFSHGQLYVAISRVTSKTGTNV 1211
>At4g03916.1 68417.m00552 hypothetical protein low similarity to
SP|P07271 DNA repair and recombination protein PIF1,
mitochondrial precursor {Saccharomyces cerevisiae}
Length = 251
Score = 48.8 bits (111), Expect = 4e-06
Identities = 22/54 (40%), Positives = 35/54 (64%)
Query: 251 RRMLPLVLSWASTVHKKQGSTVDHAVVYLGSKLFEEGQAYVALSRVKSLEGLSM 304
R+ P+V+++A T++K QG ++ +YL +F Q YVALSRV S +GL +
Sbjct: 194 RKQFPIVVAFAMTINKSQGQSLKEIGLYLPRPVFSHDQLYVALSRVTSKKGLKV 247
>At5g32070.1 68418.m03689 hypothetical protein
Length = 339
Score = 48.4 bits (110), Expect = 6e-06
Identities = 23/54 (42%), Positives = 35/54 (64%)
Query: 251 RRMLPLVLSWASTVHKKQGSTVDHAVVYLGSKLFEEGQAYVALSRVKSLEGLSM 304
RR L +++A T++K QG +++ +YL +F GQ YVALSRV S +GL +
Sbjct: 251 RRQFSLSVAFAITINKSQGQSLEQVGLYLPKPVFSLGQLYVALSRVTSKKGLKI 304
>At5g28780.1 68418.m03538 hypothetical protein various predicted
proteins, Arabidopsis thaliana
Length = 337
Score = 46.4 bits (105), Expect = 2e-05
Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Query: 213 GDHSVFTSGFAGVQCNGMHAIYPKAIQFPAKFNYG-TAERRMLPLVLSWASTVHKKQGST 271
G+ + G M +I P+ I P + + T R+ P+ + +A T+ K QG +
Sbjct: 216 GEQVIEAQIVTGTHAGKMVSI-PRFILSPPQSEHPFTLRRQQFPMRVCYAMTIIKNQGQS 274
Query: 272 VDHAVVYLGSKLFEEGQAYVALSRVKSLEGLSM 304
+ V+YL + +F Q YVALSRV S GL++
Sbjct: 275 LKSDVLYLPNPVFSHVQLYVALSRVTSPIGLTI 307
>At3g51700.1 68416.m05669 expressed protein
Length = 344
Score = 46.4 bits (105), Expect = 2e-05
Identities = 22/54 (40%), Positives = 33/54 (61%)
Query: 251 RRMLPLVLSWASTVHKKQGSTVDHAVVYLGSKLFEEGQAYVALSRVKSLEGLSM 304
RR P+ L++A T+ + Q T+ +YL +L GQ YVA+S+VKS GL +
Sbjct: 256 RRQFPVKLAFAMTIDESQRQTLSKVGIYLPRQLLFHGQRYVAISKVKSRAGLKV 309
>At3g43350.1 68416.m04582 helicase-related low similarity to
SP|Q9UUA2 DNA repair and recombination protein pif1,
mitochondrial precursor {Schizosaccharomyces pombe}
Length = 830
Score = 46.0 bits (104), Expect = 3e-05
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 251 RRMLPLVLSWASTVHKKQGSTVDHAVVYLGSKLFEEGQAYVALSRVKSLEG 301
R+ L +++A T++K QG T++ +YL +F GQ YVA+SRV S G
Sbjct: 776 RKQFALSVAFAMTINKSQGQTLESVGLYLPRPVFSHGQLYVAISRVTSKTG 826
Score = 44.8 bits (101), Expect = 7e-05
Identities = 20/48 (41%), Positives = 31/48 (64%)
Query: 251 RRMLPLVLSWASTVHKKQGSTVDHAVVYLGSKLFEEGQAYVALSRVKS 298
R+ L +++A T++K QG T++ +YL +F GQ YVA+SRV S
Sbjct: 660 RKQFALSVAFAMTINKSQGQTLESVGLYLPRPVFSHGQLYVAISRVTS 707
Score = 41.9 bits (94), Expect = 5e-04
Identities = 18/42 (42%), Positives = 28/42 (66%)
Query: 257 VLSWASTVHKKQGSTVDHAVVYLGSKLFEEGQAYVALSRVKS 298
+ ++A T++K QG T++ +YL +F GQ YVA+SRV S
Sbjct: 550 ITAFAMTINKSQGQTLESVGLYLPRPVFSHGQLYVAISRVTS 591
>At3g51690.1 68416.m05668 hypothetical protein low similarity to
SP|P07271 DNA repair and recombination protein PIF1,
mitochondrial precursor {Saccharomyces cerevisiae}
Length = 374
Score = 45.2 bits (102), Expect = 6e-05
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 235 PKAIQFPAKFNYGTAERR-MLPLVLSWASTVHKKQGSTVDHAVVYLGSKLFEEG-QAYVA 292
P+ +P + N+ RR PL L++A T+ + Q T+ +YL ++F G Q +VA
Sbjct: 211 PRIASYPTETNFPLQMRRTQYPLKLAFAMTIDESQVHTLSKVGLYLPRQVFSHGRQMFVA 270
Query: 293 LSRVKSLEGLSM 304
+S+VKS GL +
Sbjct: 271 ISKVKSRAGLKV 282
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/56 (33%), Positives = 34/56 (60%)
Query: 250 ERRMLPLVLSWASTVHKKQGSTVDHAVVYLGSKLFEEGQAYVALSRVKSLEGLSMY 305
E + P L++A T+ + +G T +YL ++F GQ Y+A+S+VK+ GL+ +
Sbjct: 294 EAKNYPFTLAFAMTIDQSRGQTFSKVGLYLPKQVFFPGQRYLAISKVKAGTGLTQF 349
>At5g37110.1 68418.m04454 hypothetical protein
Length = 1307
Score = 43.6 bits (98), Expect = 2e-04
Identities = 20/48 (41%), Positives = 29/48 (60%)
Query: 251 RRMLPLVLSWASTVHKKQGSTVDHAVVYLGSKLFEEGQAYVALSRVKS 298
R LPL + +A T++K QG ++ ++L F GQ YVA+SRV S
Sbjct: 1239 RTQLPLAVCFAMTINKSQGQSLKRVGIFLLRPCFSHGQLYVAISRVTS 1286
>At4g03690.1 68417.m00504 hypothetical protein very low similarity
to SP|Q9UUA2 DNA repair and recombination protein pif1,
mitochondrial precursor {Schizosaccharomyces pombe}
Length = 570
Score = 39.9 bits (89), Expect = 0.002
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 230 MHAIYPKAIQFPAKFNYGTAERRMLPLVLSWASTVHKKQGSTVDHAVVYLGSKLFEEGQA 289
M + P A + P K R+ PL +++A ++K Q ++ + + L +F GQ
Sbjct: 475 MMPLTPSAHRLPFKMR-----RKQFPLSVAFAMMINKSQRQSLANVGINLLKPVFSHGQL 529
Query: 290 YVALSRVKS 298
YVA+SRVKS
Sbjct: 530 YVAMSRVKS 538
>At5g29624.1 68418.m03640 DC1 domain-containing protein contains
Pfam PF03107: DC1 domain
Length = 488
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 31 CSRCQTHVTSNKTIAPSKAYWNNLDPGSIPDE 62
CSRC ++V + A K W+ LD +PDE
Sbjct: 238 CSRCPSYVV-HSGCATKKEVWDGLDLEDVPDE 268
>At5g44770.1 68418.m05487 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 541
Score = 27.9 bits (59), Expect = 9.0
Identities = 10/37 (27%), Positives = 19/37 (51%)
Query: 30 LCSRCQTHVTSNKTIAPSKAYWNNLDPGSIPDEIQAL 66
+CSRC + + A K W+ ++ +P+E + L
Sbjct: 208 ICSRCPSSYAVHSRCATRKEVWDGIELEDVPEEDEEL 244
>At4g13930.1 68417.m02156 glycine hydroxymethyltransferase,
putative / serine hydroxymethyltransferase, putative /
serine/threonine aldolase, putative similar to serine
hydroxymethyltransferase [Chlamydomonas reinhardtii]
GI:17066746; contains Pfam profile PF00464: serine
hydroxymethyltransferase
Length = 471
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 51 WNNLDPGSIPDEIQALTQAEQRLLCRIIPLVKIVKFT 87
W N S+ EI L + E+R CR I L+ FT
Sbjct: 7 WGNTSLVSVDPEIHDLIEKEKRRQCRGIELIASENFT 43
>At1g27180.1 68414.m03311 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1556
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/46 (26%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 166 VQISEQDLIRLSVPDIPENGE-PERIEIPNVFISINDVARIIRASW 210
+++ ++ L R+S ++P E P +E+PN F + + + SW
Sbjct: 1201 LEMLKKPLFRISESNVPGTSEEPRFVEVPNSFSKLLKLEELDACSW 1246
>At1g27170.1 68414.m03310 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1544
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/46 (26%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 166 VQISEQDLIRLSVPDIPENGE-PERIEIPNVFISINDVARIIRASW 210
+++ ++ L R+S ++P E P +E+PN F + + + SW
Sbjct: 1187 LEMLKKPLFRISESNVPGTSEEPRFVEVPNSFSKLLKLEELDACSW 1232
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.319 0.135 0.399
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,246,354
Number of Sequences: 28952
Number of extensions: 300594
Number of successful extensions: 674
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 650
Number of HSP's gapped (non-prelim): 27
length of query: 305
length of database: 12,070,560
effective HSP length: 81
effective length of query: 224
effective length of database: 9,725,448
effective search space: 2178500352
effective search space used: 2178500352
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 59 (27.9 bits)
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