Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000057-TA|BGIBMGA000057-PA|IPR007087|Zinc finger,
C2H2-type
(160 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g44050.1 68414.m05082 DC1 domain-containing protein contains ... 31 0.28
At4g10370.1 68417.m01702 DC1 domain-containing protein contains ... 30 0.85
At2g19260.1 68415.m02248 ELM2 domain-containing protein / PHD fi... 29 1.1
At3g19810.1 68416.m02509 expressed protein contains Pfam PF02620... 28 3.4
At5g43040.1 68418.m05254 DC1 domain-containing protein contains ... 27 6.0
At5g46370.1 68418.m05707 outward rectifying potassium channel, p... 27 7.9
At4g14980.1 68417.m02302 DC1 domain-containing protein contains ... 27 7.9
At3g01690.1 68416.m00101 expressed protein 27 7.9
At2g04500.1 68415.m00455 DC1 domain-containing protein contains ... 27 7.9
>At1g44050.1 68414.m05082 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 530
Score = 31.5 bits (68), Expect = 0.28
Identities = 17/54 (31%), Positives = 22/54 (40%)
Query: 50 ERIDRQTFEHTIERLNEHFEMAETADCSTYCEGCLACLTAYFIYICTETHYEKH 103
ERI H + EM+ T D S YC+GC + Y C E + H
Sbjct: 217 ERISDGIIHHPFHSHHLRHEMSITYDESKYCQGCALPIYEGQFYSCMECDFILH 270
>At4g10370.1 68417.m01702 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 687
Score = 29.9 bits (64), Expect = 0.85
Identities = 13/45 (28%), Positives = 18/45 (40%)
Query: 59 HTIERLNEHFEMAETADCSTYCEGCLACLTAYFIYICTETHYEKH 103
H N H + D +TYC GC + Y C E+ + H
Sbjct: 362 HPFHSHNLHLQTTRAYDENTYCRGCALPIYEGQFYSCIESDFILH 406
>At2g19260.1 68415.m02248 ELM2 domain-containing protein / PHD
finger family protein contains Pfam profiles: PF01448
ELM2 domain, PF00628 PHD-finger
Length = 631
Score = 29.5 bits (63), Expect = 1.1
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 117 RVYNPRGVHITDPILRGLRVIEITMIDVPNCQSPTGNNTS 156
R+ + R +T P + G+R+ ++ DVP+ PT ++TS
Sbjct: 470 RISHERKWRVTVPFVIGIRIGKMFQADVPDWSGPTMSDTS 509
>At3g19810.1 68416.m02509 expressed protein contains Pfam PF02620:
Uncharacterized ACR, COG1399
Length = 321
Score = 27.9 bits (59), Expect = 3.4
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 6/44 (13%)
Query: 44 FPPELEERIDRQTFEHTIERLNEHFEMAETADCSTYCEG-CLAC 86
FPPE++E ID +H + + H E+ TA C + C+G CL C
Sbjct: 245 FPPEVKE-IDIS--KHIRDLV--HLEITITAICDSACKGMCLKC 283
>At5g43040.1 68418.m05254 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 551
Score = 27.1 bits (57), Expect = 6.0
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
Query: 49 EERIDRQTFEHTIERLNEHFEMAETADCSTYCEGCLACLTAYFIYICTETHYEKH 103
E I T EH + +NE + D S C GC+ + YICT + H
Sbjct: 251 EGLIKHFTHEHNLRLINEDDILY---DKSKQCHGCVLPIFFNACYICTHCDFILH 302
>At5g46370.1 68418.m05707 outward rectifying potassium channel,
putative (KCO2) identical to KCO2 protein [Arabidopsis
thaliana] gi|6686780|emb|CAB64717; similar to kco1
[Arabidopsis thaliana] gi|2230761|emb|CAA69158; member
of the 2 pore, 4 transmembrane (2P/4TM) K+ channel
family, PMID:11500563
Length = 443
Score = 26.6 bits (56), Expect = 7.9
Identities = 10/37 (27%), Positives = 19/37 (51%)
Query: 49 EERIDRQTFEHTIERLNEHFEMAETADCSTYCEGCLA 85
E R+D++ E + L E +++ D C GC++
Sbjct: 350 ESRVDKRNRERAKKVLGESMSISQFLDADIDCNGCVS 386
>At4g14980.1 68417.m02302 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 470
Score = 26.6 bits (56), Expect = 7.9
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 49 EERIDRQTFEHTIERLNEHFEMAETADCSTYCEGCLACLTAYFIYICTETHYEKH 103
E+ I + E + RL+E++ T + + C GC+ + Y C E Y H
Sbjct: 184 EKEIIHFSHEEHVLRLDENYV---TDNVNMRCRGCVLAINGDSCYKCVECDYILH 235
>At3g01690.1 68416.m00101 expressed protein
Length = 361
Score = 26.6 bits (56), Expect = 7.9
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 95 CTETHYEKHLRKVSKFIATQNERVYNPR 122
C HY +++R + KFIAT ER+ PR
Sbjct: 242 CDLEHYPEYIRHLKKFIATV-ERLPCPR 268
>At2g04500.1 68415.m00455 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 495
Score = 26.6 bits (56), Expect = 7.9
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 58 EHTIERLNEHFEMAETADCSTYCEGCLACLTAYFIYICTETHYEKH 103
EH + RL+E+ M A T C GC+ + Y C E + H
Sbjct: 207 EHVL-RLDENCHMENDA---TRCRGCILAINGNLSYKCLECDFIIH 248
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.323 0.136 0.415
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,503,899
Number of Sequences: 28952
Number of extensions: 126958
Number of successful extensions: 291
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 287
Number of HSP's gapped (non-prelim): 9
length of query: 160
length of database: 12,070,560
effective HSP length: 76
effective length of query: 84
effective length of database: 9,870,208
effective search space: 829097472
effective search space used: 829097472
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 56 (26.6 bits)
- SilkBase 1999-2023 -