Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000055-TA|BGIBMGA000055-PA|undefined
(209 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g02890.1 68414.m00256 AAA-type ATPase family protein contains... 32 0.25
At1g01320.1 68414.m00048 tetratricopeptide repeat (TPR)-containi... 32 0.32
At4g16860.1 68417.m02547 disease resistance protein (TIR-NBS-LRR... 31 0.75
At5g60500.1 68418.m07587 undecaprenyl pyrophosphate synthetase f... 29 3.0
At5g25900.1 68418.m03075 ent-kaurene oxidase, putative (GA3) / c... 29 3.0
At5g51700.1 68418.m06411 RAR1 disease resistance protein (RAR1) ... 28 4.0
At4g25680.1 68417.m03697 expressed protein 28 4.0
At5g13680.1 68418.m01593 IKI3 family protein weak similarity to ... 28 5.3
At4g07380.1 68417.m01133 hypothetical protein 28 5.3
At1g68880.1 68414.m07883 bZIP transcription factor family protei... 27 7.0
At1g59710.1 68414.m06718 expressed protein contains Pfam profil... 27 7.0
At3g47850.1 68416.m05216 expressed protein 27 9.2
At1g79730.1 68414.m09300 hydroxyproline-rich glycoprotein family... 27 9.2
>At1g02890.1 68414.m00256 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family; similar to
mitochondrial sorting protein 1 (MSP1) (TAT-binding
homolog 4) (Swiss-Prot:P28737) [Saccharomyces
cerevisiae]
Length = 1252
Score = 32.3 bits (70), Expect = 0.25
Identities = 19/89 (21%), Positives = 47/89 (52%), Gaps = 6/89 (6%)
Query: 96 HVTNCTKTAIANPDFDVQDVGAEKFNLSFDGNQIFEVKNEVKAKENSLGNILGHLN-SGE 154
H+ NC++ + + + AE ++++ + E++NE K+ + SL +++ +
Sbjct: 880 HLMNCSEPTVKDNKLIIS---AE--SITYGLQLLHEIQNENKSTKKSLKDVVTENEFEKK 934
Query: 155 IIANPVAAFDVVTQTNDLGGLRNEKDSFK 183
++++ + D+ +D+G L N KD+ K
Sbjct: 935 LLSDVIPPSDIGVSFSDIGALENVKDTLK 963
>At1g01320.1 68414.m00048 tetratricopeptide repeat (TPR)-containing
protein low similarity to SP|P46825 Kinesin light chain
(KLC) {Loligo pealeii}; contains Pfam profile PF00515:
TPR Domain
Length = 1797
Score = 31.9 bits (69), Expect = 0.32
Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 6/96 (6%)
Query: 56 LLSNKQDTTQSSVL---NIDSNES-TRMKQAKTDLHMKEIDEYIHVTNCTKTAIANPDFD 111
L S+ + Q +VL N+ S+ + TR+K++ T LH K + E + + T +A P
Sbjct: 631 LQSDAEKNAQENVLILKNLLSDAAFTRLKESDTGLHHKSLQELVDLAQNYYTEVAIPKL- 689
Query: 112 VQDVGAEKFNLSFDGNQIFEVKNEVKAKENSLGNIL 147
V D G+ + + DG + + + + SLG ++
Sbjct: 690 VADFGSLELS-PVDGRTLTDFMHTRGLRMRSLGYVV 724
>At4g16860.1 68417.m02547 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1147
Score = 30.7 bits (66), Expect = 0.75
Identities = 19/74 (25%), Positives = 40/74 (54%), Gaps = 7/74 (9%)
Query: 56 LLSNKQDTTQSSVLNIDSNESTRMKQAKTDLHMKEIDEYIHVTNCTKTAIANPDFDVQDV 115
L S+ Q+ T+ ++N+D + +++ TDL+++ + EY+++T C +F +
Sbjct: 806 LPSSIQNATK--LINLDMRDCKKLESFPTDLNLESL-EYLNLTGCPNLR----NFPAIKM 858
Query: 116 GAEKFNLSFDGNQI 129
G F + D N+I
Sbjct: 859 GCSYFEILQDRNEI 872
>At5g60500.1 68418.m07587 undecaprenyl pyrophosphate synthetase
family protein / UPP synthetase family protein contains
putative undecaprenyl diphosphate synthase domain
[PF01255]; similar to S. cerevisiae dehydrodolichyl
diphosphate synthetase (DEDOL-PP
synthase)(Rer2)[SP|P35196], a cis-prenyltransferase
Length = 271
Score = 28.7 bits (61), Expect = 3.0
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 88 MKEIDEYIHVTNCTKTAIANPDFDVQDVGAEKFNLSF--DGNQIFEVKNEV 136
++E+DE H+ N + + F V VG N+SF DGN+ F K+ +
Sbjct: 4 LEEVDESTHIFNALMSLMRKFLFRVLCVGPIPTNISFIMDGNRRFAKKHNL 54
>At5g25900.1 68418.m03075 ent-kaurene oxidase, putative (GA3) /
cytochrome P450 identical to GA3 [Arabidopsis thaliana]
GI:3342249; similar to ent-kaurene oxidase [Cucurbita
maxima] GI:11934675; contains Pfam profile PF00067:
Cytochrome P450
Length = 509
Score = 28.7 bits (61), Expect = 3.0
Identities = 18/84 (21%), Positives = 36/84 (42%), Gaps = 2/84 (2%)
Query: 30 FNALINLYKINPLKKSKIFRTYADQI--LLSNKQDTTQSSVLNIDSNESTRMKQAKTDLH 87
F + NL ++ K K F +++ + S K ++ VLN M + +
Sbjct: 50 FPVIGNLLQLKEKKPHKTFTRWSEIYGPIYSIKMGSSSLIVLNSTETAKEAMVTRFSSIS 109
Query: 88 MKEIDEYIHVTNCTKTAIANPDFD 111
+++ + V C K+ +A D+D
Sbjct: 110 TRKLSNALTVLTCDKSMVATSDYD 133
>At5g51700.1 68418.m06411 RAR1 disease resistance protein (RAR1)
Contains a 3 nt micro-exon at exon 2.
Length = 204
Score = 28.3 bits (60), Expect = 4.0
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 85 DLHMKEIDEYIHVTNCTK 102
D+H+KE DE++ + CTK
Sbjct: 176 DVHVKEFDEFMEIPPCTK 193
>At4g25680.1 68417.m03697 expressed protein
Length = 252
Score = 28.3 bits (60), Expect = 4.0
Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 5/92 (5%)
Query: 59 NKQDTTQSSVLNIDSNESTRMKQAKTDLHMKEIDEYIHVTNCTKTAIANPDFDVQDVG-- 116
N+ + L + N + RMKQAKT+L Y ++N T + Q G
Sbjct: 136 NRFANAGDTALEVAGNTAMRMKQAKTELVSASKVAYRFLSNVTSNVTNGSNGSPQRPGTL 195
Query: 117 --AEKFNLSFDGNQIFEVKNEVK-AKENSLGN 145
++ NL G+ + + N K + +GN
Sbjct: 196 NNSDSGNLRLQGSWLKGLLNTAKPSTSTEIGN 227
>At5g13680.1 68418.m01593 IKI3 family protein weak similarity to
SP|O95163 IkappaB kinase complex-associated protein (IKK
complex-associated protein) (p150) {Homo sapiens};
contains Pfam profile PF04762: IKI3 family
Length = 1319
Score = 27.9 bits (59), Expect = 5.3
Identities = 13/53 (24%), Positives = 30/53 (56%)
Query: 91 IDEYIHVTNCTKTAIANPDFDVQDVGAEKFNLSFDGNQIFEVKNEVKAKENSL 143
+++ ++ + T+ A + DV + +KF+ S G+++F VK+ K +S+
Sbjct: 757 VEQVNNLNHVTEFVCAMKNEDVTETLYKKFSFSKKGDEVFRVKDSCSNKVSSV 809
>At4g07380.1 68417.m01133 hypothetical protein
Length = 168
Score = 27.9 bits (59), Expect = 5.3
Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 56 LLSNKQDTTQSSVLNIDSNESTRMKQAKTDLHMKEIDEYIHVTNC----TKTAIANPDFD 111
++ NK+DT Q + + SNE ++ + KE+D+ T T + NP+
Sbjct: 73 IMENKEDTFQITDPSQQSNEEVSQEEVMVNEETKEVDKMEEETQTNGEDNGTEVINPEIA 132
Query: 112 VQDVGAEK 119
++ A+K
Sbjct: 133 DVELPAKK 140
>At1g68880.1 68414.m07883 bZIP transcription factor family protein
similar to common plant regulatory factor 6 GI:9650826
from [Petroselinum crispum]; contains Pfam profile:
PF00170 bZIP transcription factor
Length = 138
Score = 27.5 bits (58), Expect = 7.0
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 32 ALINLYKINPLKKSKIFRTYADQILLSNKQDTTQSSVLNIDSNESTRMKQ 81
++ NL NP +S +F+ + D++ LSN T+ S + NE R ++
Sbjct: 4 SVYNLPSQNPNPQS-LFQIFVDRVPLSNLPATSDDSSRTAEDNERKRRRK 52
>At1g59710.1 68414.m06718 expressed protein contains Pfam profile:
PF04601 protein of unknown function (DUF569
Length = 300
Score = 27.5 bits (58), Expect = 7.0
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 105 IANPDFDVQDVGAEKFNLSFDGNQIFEVKNEVKAKEN 141
+A+ D DV+D E + +F GN + E+ +K + N
Sbjct: 217 VADDDDDVEDDSVEVSSFTFKGNGVEELTMRLKEESN 253
>At3g47850.1 68416.m05216 expressed protein
Length = 322
Score = 27.1 bits (57), Expect = 9.2
Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 6/89 (6%)
Query: 72 DSNESTRMKQAKTDLHMKEIDEYIHVTNCTKTAIANPDFDVQDVGAEKFNLSFDGNQIFE 131
++NE+ ++T+L KE++E + V N K + + + E S+ Q
Sbjct: 139 ETNEAAEKVPSETELKRKEVEERLQVLNAKKHNLVQVLKQILNAEEELKRRSYMQQQGTT 198
Query: 132 VKN------EVKAKENSLGNILGHLNSGE 154
V V +S GN+ H+ GE
Sbjct: 199 VATRPSLPLHVDVSNDSGGNVGTHMEGGE 227
>At1g79730.1 68414.m09300 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 589
Score = 27.1 bits (57), Expect = 9.2
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Query: 123 SFDGNQIFEVKNEVKAKENSLGNILGHLNSGEIIANPVAAFDVVTQTNDLGGLRNEKDSF 182
S D + F V + V + S +++ H +SG + A+ + + D GGL
Sbjct: 512 SSDEIEHFPVPSRVTVRRRSTVSVIEHKDSGVYSSRVGASSSKMRRLEDEGGLGRSWKHE 571
Query: 183 KYEDINAKDDLGNE 196
+D N D GNE
Sbjct: 572 PEQDANQYSD-GNE 584
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.314 0.131 0.365
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,721,099
Number of Sequences: 28952
Number of extensions: 188758
Number of successful extensions: 445
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 442
Number of HSP's gapped (non-prelim): 13
length of query: 209
length of database: 12,070,560
effective HSP length: 78
effective length of query: 131
effective length of database: 9,812,304
effective search space: 1285411824
effective search space used: 1285411824
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 57 (27.1 bits)
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