Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000053-TA|BGIBMGA000053-PA|IPR012464|Protein of unknown
function DUF1676
(493 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g12810.1 68416.m01598 SNF2 domain-containing protein / helica... 34 0.25
At5g05240.1 68418.m00560 expressed protein similar to unknown pr... 33 0.33
At1g11950.1 68414.m01381 transcription factor jumonji (jmjC) dom... 33 0.57
At1g16380.1 68414.m01959 cation/proton exchanger, putative (CHX1... 32 1.00
At2g03420.1 68415.m00300 expressed protein 31 1.3
At3g28770.1 68416.m03591 expressed protein 31 1.7
At4g37790.1 68417.m05348 homeobox-leucine zipper protein 22 (HAT... 31 2.3
At5g42630.1 68418.m05189 myb family transcription factor (KAN4) ... 30 4.0
At1g79400.1 68414.m09253 cation/proton exchanger, putative (CHX2... 30 4.0
At5g40450.1 68418.m04905 expressed protein 29 7.0
>At3g12810.1 68416.m01598 SNF2 domain-containing protein / helicase
domain-containing protein similar to transcriptional
activator SRCAP [Homo sapiens] GI:5106572; contains Pfam
profiles PF00271: Helicase conserved C-terminal domain,
PF00176: SNF2 family N-terminal domain
Length = 2055
Score = 33.9 bits (74), Expect = 0.25
Identities = 24/122 (19%), Positives = 54/122 (44%), Gaps = 4/122 (3%)
Query: 243 LEKEKRKPIVTSIASTVRINGKTTNANEIIKENGMKEIKHRLAKRNVDALEIVAGKKEIA 302
LE E R+ +A V ++ + + K+ K+ K++ K+ + A K +
Sbjct: 1477 LENEAREREAAEVAEMVLTQNESAHVLKPKKKKKAKKAKYKSLKKG----SLAAESKHVK 1532
Query: 303 EDISSEIPGTDDREKLTHVNRFDNDIVEDITLDNDSNWKTSILIGKLLKKSAVNELKTER 362
+ E DD E+ +V+ D+D+V ++ + K +++ +K++ + K +
Sbjct: 1533 SVVKIEDSTDDDNEEFGYVSSSDSDMVTPLSRMHMKGKKRDLIVDTDEEKTSKKKAKKHK 1592
Query: 363 NS 364
S
Sbjct: 1593 KS 1594
>At5g05240.1 68418.m00560 expressed protein similar to unknown
protein (gb AAD32815.2)
Length = 530
Score = 33.5 bits (73), Expect = 0.33
Identities = 34/148 (22%), Positives = 69/148 (46%), Gaps = 15/148 (10%)
Query: 244 EKEKRKPIVTSIASTVRINGKTTNANEIIKENGMKEI-----KHRLAKRNVDALEIVAGK 298
E K +P+ ++ S ++G + ++ K NGM ++ +N+ E++ G+
Sbjct: 31 ELSKIEPVTPTLNSGNTVHG----SKDVEKANGMSQVGKVSESFVTEGKNIKT-ELLVGQ 85
Query: 299 KEIAEDISSEIPGTD-DREKLTHVNRFDNDIVEDITLDNDSNWKTSILIGKLLKKSAVNE 357
E+ S + TD D +K + R DN L++D TS+ ++ +K++ +
Sbjct: 86 -EVKSSSSKLVLNTDVDCDKRALLKRCDNADAVSSCLNDDL---TSVCSSRISQKTSSMD 141
Query: 358 LKTERNSRNGDASTDDNVKCNTQYNPDG 385
+ +E S NG + D +K T+ +G
Sbjct: 142 VYSECGSSNGSVAKRDPMKVWTEMKQNG 169
>At1g11950.1 68414.m01381 transcription factor jumonji (jmjC)
domain-containing protein contains Pfam domain, PF02373:
jmjC domain; non-consensus TG acceptor splice site at
exon boundary 79262
Length = 880
Score = 32.7 bits (71), Expect = 0.57
Identities = 41/207 (19%), Positives = 79/207 (38%), Gaps = 13/207 (6%)
Query: 261 INGKTTNANEIIKENGMKEIKHRLA----KRNVDALEIVAGKKEIAEDISSEIPG--TDD 314
+ G+ I+K NG+K+I K+ V+A + +G +I E+IS E P +
Sbjct: 1 MEGEVATNGVILKHNGVKDISLETCWPEKKKPVEATSLSSGSSDIEEEISVECPKRVANQ 60
Query: 315 REKLTHVNRFDNDIVEDITLDNDSNWKTSILIGKLLKKSAVNELKTERNSRNGDASTDDN 374
R K + + D+++ + + KK + K + + DD
Sbjct: 61 RRKRSKADEIKTKSSRKRKCDDENKCEEN------EKKQRSSVKKRATTWKEEEVVVDDE 114
Query: 375 VKCNTQYNPDGKPAVCREYRRKKRDIIDIFQNSYRYILSKLFGTSINRRTVANPKYKIVN 434
KC Q R KK +D + + +S L S + + + K + N
Sbjct: 115 KKCEQQLQLVPSSKATSRSRSKKSVSVDTWLVNNEIDVSALSSRSESELSDSYLKTEYFN 174
Query: 435 GVKYVYQPFRASQKVKIIAAEDFNKGE 461
+ + + +A+ ++ +KGE
Sbjct: 175 DCRSMTRSLKANLG-ELAICHQCSKGE 200
>At1g16380.1 68414.m01959 cation/proton exchanger, putative (CHX1)
monovalent cation:proton antiporter family 2 (CPA2)
member, PMID:11500563
Length = 785
Score = 31.9 bits (69), Expect = 1.00
Identities = 30/124 (24%), Positives = 50/124 (40%), Gaps = 9/124 (7%)
Query: 260 RINGKTTNANEIIKENGMKEIKHR------LAKRNVDALEIVAGKKEIAEDISSEIPGTD 313
RI+GKTTN E+ + K +K RN+ + G + + G D
Sbjct: 563 RIDGKTTNDGEVFRHMNRKVLKQAQCSIGIFVDRNITGFHQLHGSDSVQHVAALFFGGPD 622
Query: 314 DREKLTHVNRFDNDIVEDITLDN--DSNWKTSILIGKLLKKSAVNELKTERNSRNGDAST 371
DRE L+ N+ +T+ + KT ++G + K NE+ E S + +
Sbjct: 623 DREALSLCKWLTNNSQIHLTVIQFVADDSKTEKIVGDAVTKEN-NEVFLEIVSEDQTENE 681
Query: 372 DDNV 375
D +
Sbjct: 682 TDRI 685
>At2g03420.1 68415.m00300 expressed protein
Length = 170
Score = 31.5 bits (68), Expect = 1.3
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 309 IPGTDDREKLTHVNRFDNDIVEDITLDNDSNWKTSILIGKLLKKSAVNELKTER 362
+PG + K+ ++RF N + +ND+ +K S L+ KLL+ S +N+ K ER
Sbjct: 77 VPGPE-LPKIEFLDRF-NAKNQKFYAENDARFKDSPLLKKLLENSKLNKEKNER 128
>At3g28770.1 68416.m03591 expressed protein
Length = 2081
Score = 31.1 bits (67), Expect = 1.7
Identities = 16/52 (30%), Positives = 30/52 (57%)
Query: 263 GKTTNANEIIKENGMKEIKHRLAKRNVDALEIVAGKKEIAEDISSEIPGTDD 314
GK + ++ ++ NG+K+ + +N D EI GK++ +D +EI G D+
Sbjct: 1743 GKDSKDSKSVEINGVKDDSLKDDSKNGDINEINNGKEDSVKDNVTEIQGNDN 1794
>At4g37790.1 68417.m05348 homeobox-leucine zipper protein 22 (HAT22)
/ HD-ZIP protein 22 identical to homeobox-leucine zipper
protein HAT22 (HD-ZIP protein 22) (SP:P46604)
[Arabidopsis thaliana]
Length = 278
Score = 30.7 bits (66), Expect = 2.3
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 352 KSAVNELKTERNSRNGDASTDDNVKCNTQYNPDGKPAVCREYRRKKRDIIDIFQNSYRYI 411
+ V+ K R ++ A +DN K ++ NP K A+ R+ + R + FQN R
Sbjct: 119 EEGVSARKKLRLTKQQSALLEDNFKLHSTLNPKQKQALARQLNLRPRQVEVWFQN--RRA 176
Query: 412 LSKLFGTSIN 421
+KL T ++
Sbjct: 177 RTKLKQTEVD 186
>At5g42630.1 68418.m05189 myb family transcription factor (KAN4)
contains Pfam profile: PF00249 myb-like DNA-binding
domain; identical to cDNA GARP-like putative
transcription factor KANADI4 (KAN4) GI:15723592
Length = 276
Score = 29.9 bits (64), Expect = 4.0
Identities = 15/104 (14%), Positives = 44/104 (42%), Gaps = 1/104 (0%)
Query: 297 GKKEIAEDISSEIPGTDDREKLTHVNRFDNDIVEDITLDNDSNWKTSILIGKLLKKSAVN 356
G+ ++ ++ I ++ E+ ++ + ++W ++ + + + A +
Sbjct: 169 GEGKVEKEAEQRIEDNNNNEEADEGTDTNSPNSSSVQKTQRASWSSTKEVSRSISTQAYS 228
Query: 357 ELKTERNSRNGDASTDDNVKCNTQYNPDGKPAVCREYRRKKRDI 400
L T ++++ + D N+ N + G+P+ EY D+
Sbjct: 229 HLGTTHHTKDNEEKEDTNIHLNLDFTL-GRPSWGMEYAEPSSDL 271
>At1g79400.1 68414.m09253 cation/proton exchanger, putative (CHX2)
monovalent cation:proton antiporter family 2 (CPA2)
member, PMID:11500563
Length = 783
Score = 29.9 bits (64), Expect = 4.0
Identities = 30/131 (22%), Positives = 48/131 (36%), Gaps = 9/131 (6%)
Query: 260 RINGKTTNANEIIKENGMKEIKHR------LAKRNVDALEIVAGKKEIAEDISSEIPGTD 313
RI+GKTTN E+ ++ ++H RN+ + G + + G D
Sbjct: 562 RIDGKTTNDGELFRQMNRNVLRHGPCSIGIFVDRNITGFQQPHGFDSVQHVATLFFGGPD 621
Query: 314 DREKLTHVNRFDNDIVEDITLDN--DSNWKTSILIGKLLKKSAVNELKTERNSRNGDAST 371
DRE L N+ + +T+ K +G + + NE+ E RN
Sbjct: 622 DREALALCRWLANNTLIHLTVIQFVSEESKAETPVGNAMTRDN-NEVFMEVLGRNQTEQE 680
Query: 372 DDNVKCNTQYN 382
D YN
Sbjct: 681 TDRSFLEEFYN 691
>At5g40450.1 68418.m04905 expressed protein
Length = 2910
Score = 29.1 bits (62), Expect = 7.0
Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 2/100 (2%)
Query: 267 NANEIIKENGMKEIKHRLAKR-NVDALEIVAGKKEIAEDISSEIPGTDDREKLTHVNRFD 325
N +E I KEI+ K+ N+ EI +KEI ++ + + TDD T D
Sbjct: 2689 NTSENIDHEAAKEIEQEEGKQTNIVKEEIREEEKEINQESFNNVKETDDAIDKTQPEIRD 2748
Query: 326 NDIVEDITLDNDSNWKTSILIGKLLKKSAVNELKTERNSR 365
+ + ++ D + + K+ NE+ + NS+
Sbjct: 2749 IESLSSVSKTQDKP-EPEYEVPNQQKREITNEVPSLENSK 2787
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.315 0.130 0.363
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,111,271
Number of Sequences: 28952
Number of extensions: 368948
Number of successful extensions: 1162
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1155
Number of HSP's gapped (non-prelim): 15
length of query: 493
length of database: 12,070,560
effective HSP length: 84
effective length of query: 409
effective length of database: 9,638,592
effective search space: 3942184128
effective search space used: 3942184128
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)
S2: 61 (28.7 bits)
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