GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000048-TA|BGIBMGA000048-PA|undefined
         (272 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g17920.1 68415.m02075 expressed protein similar to zinc finge...    30   1.4  
At5g65170.1 68418.m08197 VQ motif-containing protein contains PF...    30   1.9  
At2g24395.1 68415.m02914 chaperone protein dnaJ-related contains...    28   5.8  
At5g24310.1 68418.m02861 expressed protein strong similarity to ...    28   7.7  

>At2g17920.1 68415.m02075 expressed protein similar to zinc finger
           protein [Arabidopsis thaliana] GI:976277
          Length = 307

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 64  TQNRKYA-FRPRAIPLKKEEPQIERNAYYSQDNMKNYKSEALFPGDYVP 111
           T NR Y  +RPR   L +E   +  +   S +N ++  +E+ FP    P
Sbjct: 212 THNRNYCPYRPRVQILDRERAALHDSVLRSSNNSQSQMTESSFPAPLTP 260


>At5g65170.1 68418.m08197 VQ motif-containing protein contains
           PF05678: VQ motif
          Length = 362

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 10/37 (27%), Positives = 24/37 (64%)

Query: 132 PQTIPLIRNEEFQKRSLDVNEEPIIEKPEGFSEPTAS 168
           P+      N+    RS++ N++P++++ +G+++P AS
Sbjct: 302 PEKSTEAENDNNMLRSINGNDQPMVQRSDGYTQPGAS 338


>At2g24395.1 68415.m02914 chaperone protein dnaJ-related contains
          Pfam PF00684 : DnaJ central domain (4 repeats)
          Length = 132

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/34 (32%), Positives = 23/34 (67%), Gaps = 1/34 (2%)

Query: 56 PSSYSRPKTQNRKYAFRP-RAIPLKKEEPQIERN 88
          PS  S    + ++  F+P R +PL+++EPQ++++
Sbjct: 23 PSPASSTSRRKQRRLFKPFRCVPLQEQEPQLDQS 56


>At5g24310.1 68418.m02861 expressed protein strong similarity to
           unknown protein (emb|CAB66408.1)
          Length = 321

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/25 (48%), Positives = 16/25 (64%)

Query: 49  SASIVIQPSSYSRPKTQNRKYAFRP 73
           S S+ I+PSS SRP T ++  A  P
Sbjct: 235 SGSVAIRPSSISRPTTPSKSRAVTP 259


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.317    0.133    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,040,211
Number of Sequences: 28952
Number of extensions: 125502
Number of successful extensions: 284
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 282
Number of HSP's gapped (non-prelim): 4
length of query: 272
length of database: 12,070,560
effective HSP length: 80
effective length of query: 192
effective length of database: 9,754,400
effective search space: 1872844800
effective search space used: 1872844800
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)