Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40087
         (855 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-...    69   1e-10
UniRef50_Q0VJV2 Cluster: Like moricin; n=3; Manduca sexta|Rep: L...    43   0.011
UniRef50_UPI0000E88040 Cluster: PAS; n=1; Methylophilales bacter...    36   0.98 

>UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-like
            protein; n=25; Arthropoda|Rep: Endonuclease and reverse
            transcriptase-like protein - Bombyx mori (Silk moth)
          Length = 986

 Score = 69.3 bits (162), Expect = 1e-10
 Identities = 31/31 (100%), Positives = 31/31 (100%)
 Frame = -2

Query: 155  MSFFKRGLWRVLSGRQRLGSAPGIAEVHGRR 63
            MSFFKRGLWRVLSGRQRLGSAPGIAEVHGRR
Sbjct: 956  MSFFKRGLWRVLSGRQRLGSAPGIAEVHGRR 986


>UniRef50_Q0VJV2 Cluster: Like moricin; n=3; Manduca sexta|Rep:
          Like moricin - Manduca sexta (Tobacco hawkmoth)
          (Tobacco hornworm)
          Length = 248

 Score = 42.7 bits (96), Expect = 0.011
 Identities = 18/23 (78%), Positives = 19/23 (82%)
 Frame = -3

Query: 73 MGDGNHSPSGGPYARLPTKAIKK 5
          MGDGNHSPSG PYA LPT+A  K
Sbjct: 1  MGDGNHSPSGRPYASLPTRAKMK 23


>UniRef50_UPI0000E88040 Cluster: PAS; n=1; Methylophilales bacterium
           HTCC2181|Rep: PAS - Methylophilales bacterium HTCC2181
          Length = 555

 Score = 36.3 bits (80), Expect = 0.98
 Identities = 17/56 (30%), Positives = 31/56 (55%)
 Frame = +2

Query: 650 WILLGVIFFLIIMEFPLLGIKIVPYLLLGHWIRAVQGMTELVNSLG*KNKFFLRGP 817
           W+ +  +FF+ I+   L+ + I  Y LLG W++ +  M + +  +G K K  +R P
Sbjct: 132 WVEMSRLFFITIVF--LIALNIFVYFLLGRWLQPINPMLKAIEKMG-KGKLSIRLP 184


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 837,317,031
Number of Sequences: 1657284
Number of extensions: 17452887
Number of successful extensions: 34283
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 33312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34280
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 75423184424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)