Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40010
(613 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P46781 Cluster: 40S ribosomal protein S9; n=181; Eukary... 162 5e-39
UniRef50_O15612 Cluster: 40S ribosomal protein S9; n=2; Entamoeb... 93 6e-18
UniRef50_Q10KL6 Cluster: 40S ribosomal protein S9, putative; n=5... 81 3e-14
UniRef50_Q8SRW6 Cluster: 40S RIBOSOMAL PROTEIN S9; n=1; Encephal... 78 2e-13
UniRef50_A7IAH7 Cluster: Ribosomal protein S4; n=1; Candidatus M... 76 8e-13
UniRef50_Q2FT97 Cluster: 30S ribosomal protein S4P; n=2; Methano... 72 1e-11
UniRef50_P54020 Cluster: 30S ribosomal protein S4P; n=12; Archae... 71 2e-11
UniRef50_Q96YV8 Cluster: 30S ribosomal protein S4P; n=2; Sulfolo... 71 3e-11
UniRef50_Q3LWD1 Cluster: Ribosomal protein S9; n=1; Bigelowiella... 70 5e-11
UniRef50_Q6CM19 Cluster: Similarity; n=2; Saccharomycetaceae|Rep... 69 7e-11
UniRef50_UPI0000501C59 Cluster: UPI0000501C59 related cluster; n... 66 6e-10
UniRef50_Q8ZTV1 Cluster: 30S ribosomal protein S4P; n=5; Thermop... 66 6e-10
UniRef50_Q74NF7 Cluster: 30S ribosomal protein S4P; n=5; Archaea... 66 6e-10
UniRef50_Q011L4 Cluster: Chromosome 09 contig 1, DNA sequence; n... 66 8e-10
UniRef50_Q97B95 Cluster: 30S ribosomal protein S4P; n=5; Archaea... 65 1e-09
UniRef50_A6UW05 Cluster: Ribosomal protein S4; n=1; Methanococcu... 62 8e-09
UniRef50_A6MWA4 Cluster: Ribosomal subunit protein S9; n=3; Euth... 60 5e-08
UniRef50_Q8PV18 Cluster: 30S ribosomal protein S4P; n=8; Euryarc... 60 5e-08
UniRef50_Q0W1V5 Cluster: 30S ribosomal protein S4P; n=1; uncultu... 58 1e-07
UniRef50_Q9HQJ6 Cluster: 30S ribosomal protein S4P; n=3; Halobac... 58 2e-07
UniRef50_A0RY02 Cluster: 30S ribosomal protein S4P; n=3; Thermop... 56 5e-07
UniRef50_Q2NFZ4 Cluster: 30S ribosomal protein S4P; n=3; Methano... 56 7e-07
UniRef50_Q9SZ81 Cluster: Putative ribosomal protein; n=1; Arabid... 54 2e-06
UniRef50_A0SNY6 Cluster: Ribosomal protein small subunit S9; n=1... 53 6e-06
UniRef50_Q0D4G1 Cluster: Os07g0628300 protein; n=2; Oryza sativa... 50 6e-05
UniRef50_Q82T00 Cluster: 30S ribosomal protein S4 B; n=3; Betapr... 48 1e-04
UniRef50_Q8RE43 Cluster: 30S ribosomal protein S4; n=6; Bacteria... 48 2e-04
UniRef50_A5BYX8 Cluster: Putative uncharacterized protein; n=1; ... 47 3e-04
UniRef50_O21263 Cluster: Mitochondrial ribosomal protein S4; n=1... 47 3e-04
UniRef50_Q4AEQ5 Cluster: Ribosomal protein S4:RNA-binding S4; n=... 46 5e-04
UniRef50_Q6AP44 Cluster: 30S ribosomal protein S4; n=37; Bacteri... 46 0.001
UniRef50_P48270 Cluster: Chloroplast 30S ribosomal protein S4; n... 46 0.001
UniRef50_A5KQD5 Cluster: Putative uncharacterized protein; n=2; ... 45 0.002
UniRef50_P59129 Cluster: 30S ribosomal protein S4; n=19; Bacteri... 45 0.002
UniRef50_O66484 Cluster: 30S ribosomal protein S4; n=17; Bacteri... 43 0.005
UniRef50_Q0TMU2 Cluster: 30S ribosomal protein S4 B; n=13; Clost... 42 0.009
UniRef50_P58134 Cluster: Plastid 30S ribosomal protein S4; n=2; ... 42 0.009
UniRef50_A6DLN6 Cluster: 30S ribosomal protein S4; n=1; Lentisph... 42 0.012
UniRef50_Q5YGE8 Cluster: Small ribosomal protein 4; n=1; Calycul... 42 0.015
UniRef50_A5USG3 Cluster: Ribosomal protein S4; n=4; Chloroflexac... 41 0.020
UniRef50_Q5DQ32 Cluster: Ribosomal protein small subunit 4; n=6;... 41 0.027
UniRef50_Q74K05 Cluster: 30S ribosomal protein S4; n=107; cellul... 41 0.027
UniRef50_A3HXD0 Cluster: 30S ribosomal protein S4; n=1; Algoriph... 40 0.035
UniRef50_A4EA85 Cluster: Putative uncharacterized protein; n=1; ... 40 0.047
UniRef50_Q7YLR6 Cluster: Small ribosomal protein 4; n=10; Conife... 40 0.047
UniRef50_A7QX06 Cluster: Chromosome chr14 scaffold_211, whole ge... 40 0.047
UniRef50_Q9G884 Cluster: Ribosomal protein S4; n=1; Malawimonas ... 40 0.047
UniRef50_Q2JUD6 Cluster: 30S ribosomal protein S4; n=2041; cellu... 40 0.047
UniRef50_Q1CXF1 Cluster: 30S ribosomal protein S4 B; n=2; Cystob... 40 0.047
UniRef50_A7AVJ4 Cluster: U3 small nucleolar ribonucleoprotein pr... 39 0.081
UniRef50_Q9XQQ7 Cluster: Apicoplast 30S ribosomal protein S4; n=... 39 0.081
UniRef50_P56799 Cluster: Chloroplast 30S ribosomal protein S4; n... 39 0.11
UniRef50_Q2GDI3 Cluster: 30S ribosomal protein S4; n=8; Ricketts... 38 0.19
UniRef50_A0JX91 Cluster: 30S ribosomal protein S4; n=20; Actinob... 38 0.19
UniRef50_Q06J34 Cluster: Chloroplast 30S ribosomal protein S4; n... 38 0.19
UniRef50_Q9XPI8 Cluster: Ribosomal protein S4; n=2; Dictyosteliu... 38 0.25
UniRef50_O01513 Cluster: Putative 40S ribosomal protein S4-like;... 38 0.25
UniRef50_Q7NAV0 Cluster: 30S ribosomal protein S4; n=11; Mollicu... 38 0.25
UniRef50_Q9X1I3 Cluster: 30S ribosomal protein S4; n=14; Bacteri... 37 0.33
UniRef50_O51560 Cluster: 30S ribosomal protein S4; n=3; Borrelia... 37 0.33
UniRef50_Q8SRU8 Cluster: U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN; n... 36 0.57
UniRef50_Q9Z5U7 Cluster: 30S ribosomal protein S4; n=5; Alphapro... 36 0.57
UniRef50_Q5LNM2 Cluster: 30S ribosomal protein S4; n=86; Bacteri... 36 0.57
UniRef50_Q92BB2 Cluster: 30S ribosomal protein S4; n=35; Bacteri... 36 0.57
UniRef50_Q06SJ3 Cluster: Chloroplast 30S ribosomal protein S4; n... 36 0.57
UniRef50_P36128 Cluster: Putative uncharacterized protein YKR033... 36 0.76
UniRef50_Q2JFE9 Cluster: 30S ribosomal protein S4; n=25; Bacteri... 36 0.76
UniRef50_Q6MIP0 Cluster: 30S ribosomal protein S4 B; n=1; Bdello... 36 1.0
UniRef50_O22029 Cluster: Chloroplast 30S ribosomal protein S4; n... 36 1.0
UniRef50_Q9NV31 Cluster: U3 small nucleolar ribonucleoprotein pr... 36 1.0
UniRef50_UPI0000498936 Cluster: U3 small nucleolar ribonucleopro... 35 1.3
UniRef50_Q9VNR6 Cluster: CG11238-PA; n=2; Sophophora|Rep: CG1123... 35 1.3
UniRef50_Q17AL1 Cluster: U3 small nucleolar ribonucleoprotein pr... 35 1.3
UniRef50_A6YGA2 Cluster: Ribosomal protein S4; n=30; cellular or... 35 1.8
UniRef50_Q8IKM0 Cluster: Ribosomal protein S4, putative; n=1; Pl... 35 1.8
UniRef50_Q7R0S4 Cluster: GLP_186_71509_70955; n=1; Giardia lambl... 35 1.8
UniRef50_P32899 Cluster: U3 small nucleolar ribonucleoprotein pr... 35 1.8
UniRef50_A7RWV6 Cluster: Predicted protein; n=1; Nematostella ve... 34 2.3
UniRef50_Q4P328 Cluster: Helicase SWR1; n=1; Ustilago maydis|Rep... 34 2.3
UniRef50_P46743 Cluster: Mitochondrial ribosomal protein S4; n=1... 34 2.3
UniRef50_UPI0000084740 Cluster: lethal (2) 35Bb CG31834-PA; n=1;... 34 3.1
UniRef50_A5BPM7 Cluster: Putative uncharacterized protein; n=1; ... 33 4.0
UniRef50_Q5KLM6 Cluster: Nam9 protein, mitochondrial, putative; ... 33 5.3
UniRef50_P98196 Cluster: Probable phospholipid-transporting ATPa... 33 5.3
UniRef50_UPI0000E4A461 Cluster: PREDICTED: similar to MGC69249 p... 33 7.1
UniRef50_Q86UK0 Cluster: ATP-binding cassette sub-family A membe... 33 7.1
UniRef50_UPI0000DBF3A8 Cluster: UPI0000DBF3A8 related cluster; n... 32 9.3
UniRef50_A2XYL0 Cluster: Putative uncharacterized protein; n=2; ... 32 9.3
>UniRef50_P46781 Cluster: 40S ribosomal protein S9; n=181;
Eukaryota|Rep: 40S ribosomal protein S9 - Homo sapiens
(Human)
Length = 194
Score = 162 bits (394), Expect = 5e-39
Identities = 77/85 (90%), Positives = 82/85 (96%)
Frame = +3
Query: 255 RIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVV 434
RIGVLDE +MKLDY+LGLKIEDFLERRLQTQVFK GLAKSIHHAR+LIRQRHIRVRKQVV
Sbjct: 83 RIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVV 142
Query: 435 NIPSFIVRLDSGKHIDFSLKSPFGG 509
NIPSFIVRLDS KHIDFSL+SP+GG
Sbjct: 143 NIPSFIVRLDSQKHIDFSLRSPYGG 167
Score = 143 bits (347), Expect = 3e-33
Identities = 67/75 (89%), Positives = 73/75 (97%)
Frame = +1
Query: 31 VFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKD 210
V KTYVTPRRPFEK+RLDQELK+IGEYGLRNKREVWRVK+TLA+IRKAARELLTL+EKD
Sbjct: 8 VCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKD 67
Query: 211 PKRLFEGNALLRRLV 255
P+RLFEGNALLRRLV
Sbjct: 68 PRRLFEGNALLRRLV 82
Score = 37.5 bits (83), Expect = 0.25
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = +2
Query: 509 GRPGRVKRKNLRKGQGG 559
GRPGRVKRKN +KGQGG
Sbjct: 168 GRPGRVKRKNAKKGQGG 184
>UniRef50_O15612 Cluster: 40S ribosomal protein S9; n=2; Entamoeba
histolytica|Rep: 40S ribosomal protein S9 - Entamoeba
histolytica
Length = 185
Score = 92.7 bits (220), Expect = 6e-18
Identities = 46/93 (49%), Positives = 65/93 (69%)
Frame = +3
Query: 258 IGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVN 437
+G+L Q KL++VL LK E+ LERRLQT V++ G AKSIHHAR+LIR + I+V KQVV+
Sbjct: 83 LGILPRDQNKLEFVLALKEENLLERRLQTLVYRKGFAKSIHHARVLIRGKMIKVGKQVVD 142
Query: 438 IPSFIVRLDSGKHIDFSLKSPFGGVVLDVSRGR 536
+PSF+VR++S I + +P ++ R R
Sbjct: 143 VPSFLVRVESEPLIQLADNTPLTNPEINGRRKR 175
Score = 87.0 bits (206), Expect = 3e-16
Identities = 39/72 (54%), Positives = 53/72 (73%)
Frame = +1
Query: 37 SKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPK 216
S TY TP+ P+E+ R D ELK++G++GL+NK+E+ RV Y L +R A+ +L + KDPK
Sbjct: 9 SITYKTPKVPYERERFDAELKLVGQFGLKNKKEIQRVHYMLGHMRTIAKVMLMKDAKDPK 68
Query: 217 RLFEGNALLRRL 252
RL EG ALLRRL
Sbjct: 69 RLLEGAALLRRL 80
>UniRef50_Q10KL6 Cluster: 40S ribosomal protein S9, putative; n=5;
Oryza sativa|Rep: 40S ribosomal protein S9, putative -
Oryza sativa subsp. japonica (Rice)
Length = 157
Score = 80.6 bits (190), Expect = 3e-14
Identities = 40/73 (54%), Positives = 52/73 (71%)
Frame = +1
Query: 34 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 213
+ KT+ PRRP+EK R D ELK+ GEYGLR+K E+WRV +ELLTL+EK+P
Sbjct: 10 YGKTFKKPRRPYEKERPDAELKLYGEYGLRSKCELWRV-----------QELLTLDEKNP 58
Query: 214 KRLFEGNALLRRL 252
+R+FEG ALLR +
Sbjct: 59 RRIFEGEALLRHM 71
Score = 70.5 bits (165), Expect = 3e-11
Identities = 34/53 (64%), Positives = 39/53 (73%)
Frame = +3
Query: 255 RIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHI 413
R G+L E Q KLDYVL L +E+FL+ RLQT VFK G KSIHH +LIRQ HI
Sbjct: 73 RYGLLGEGQNKLDYVLALTVENFLQCRLQTIVFKNGTVKSIHHDHVLIRQHHI 125
>UniRef50_Q8SRW6 Cluster: 40S RIBOSOMAL PROTEIN S9; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S9 -
Encephalitozoon cuniculi
Length = 184
Score = 77.8 bits (183), Expect = 2e-13
Identities = 44/106 (41%), Positives = 67/106 (63%), Gaps = 2/106 (1%)
Frame = +3
Query: 252 GRIGVLDEKQMK--LDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRK 425
G I + D++++ L+ VL L I +LERRLQ +VF AGLAKS+HHAR+LI R I ++
Sbjct: 84 GGIDLCDKQEVVNGLNKVLDLTINHYLERRLQFRVFAAGLAKSVHHARLLIGGRCISIKD 143
Query: 426 QVVNIPSFIVRLDSGKHIDFSLKSPFGGVVLDVSRGRTSARDRVAE 563
Q+V++P F+VR D I+++ S +G +G+ A +V E
Sbjct: 144 QIVDVPGFMVRADKEPLIEYNPYSRYG------DKGKKKAEAKVGE 183
Score = 61.7 bits (143), Expect = 1e-08
Identities = 33/74 (44%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Frame = +1
Query: 37 SKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPK 216
SK TPR PFEK RL +E +++G YGL+NK E+W ++ A+ ++ AR LLT +P+
Sbjct: 7 SKRASTPRDPFEKERLIREAQLVGVYGLKNKHELWVMEKIFAKDKERARILLT--STNPE 64
Query: 217 RL-FEGNALLRRLV 255
+ G +LLRRL+
Sbjct: 65 DIPINGRSLLRRLM 78
>UniRef50_A7IAH7 Cluster: Ribosomal protein S4; n=1; Candidatus
Methanoregula boonei 6A8|Rep: Ribosomal protein S4 -
Methanoregula boonei (strain 6A8)
Length = 185
Score = 75.8 bits (178), Expect = 8e-13
Identities = 33/58 (56%), Positives = 44/58 (75%)
Frame = +1
Query: 25 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTL 198
P K+Y TP+RPFEK R+++E +++ EYGLRNKREVW+ + L + RKAARELL L
Sbjct: 4 PGKNHKSYQTPKRPFEKTRIEEETRLVIEYGLRNKREVWKAQSHLRKYRKAARELLAL 61
Score = 57.6 bits (133), Expect = 2e-07
Identities = 30/72 (41%), Positives = 43/72 (59%)
Frame = +3
Query: 288 LDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDS 467
+D VL LK+ LERRLQT V++ GLA+S AR L+ HI + + V +P ++V
Sbjct: 94 IDNVLALKVPAQLERRLQTLVYRKGLARSPKQARQLVTHGHIAIGGRRVTVPGYLVTRGE 153
Query: 468 GKHIDFSLKSPF 503
I ++ KSPF
Sbjct: 154 ETTISYAGKSPF 165
>UniRef50_Q2FT97 Cluster: 30S ribosomal protein S4P; n=2;
Methanomicrobiales|Rep: 30S ribosomal protein S4P -
Methanospirillum hungatei (strain JF-1 / DSM 864)
Length = 181
Score = 71.7 bits (168), Expect = 1e-11
Identities = 31/59 (52%), Positives = 43/59 (72%)
Frame = +1
Query: 25 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLE 201
P K Y TP+RPFE +R+++E +++ EYGLRNKREVW K L + RKAARE++ L+
Sbjct: 4 PGKNHKQYQTPKRPFELSRIEEETRLVIEYGLRNKREVWIAKGALRKYRKAAREIIALQ 62
Score = 58.4 bits (135), Expect = 1e-07
Identities = 33/82 (40%), Positives = 46/82 (56%)
Frame = +3
Query: 255 RIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVV 434
R G+L E +D VL LK+E L+RRLQTQV++ G A+S AR I HI + + V
Sbjct: 84 RSGMLSENA-DIDDVLALKVEQQLDRRLQTQVYRRGFARSPKQARQFITHGHIAIGGRRV 142
Query: 435 NIPSFIVRLDSGKHIDFSLKSP 500
IP + V + I ++ SP
Sbjct: 143 TIPGYTVSAKEQEEISYAGSSP 164
>UniRef50_P54020 Cluster: 30S ribosomal protein S4P; n=12;
Archaea|Rep: 30S ribosomal protein S4P - Methanococcus
jannaschii
Length = 187
Score = 70.9 bits (166), Expect = 2e-11
Identities = 37/83 (44%), Positives = 51/83 (61%)
Frame = +3
Query: 255 RIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVV 434
+ G+L + LD VL L +ED LERRLQT VF+ GLA++ AR LI HI V +VV
Sbjct: 80 KYGILKIENPTLDDVLSLTVEDILERRLQTLVFRKGLARTPRQARQLIVHGHIAVNGRVV 139
Query: 435 NIPSFIVRLDSGKHIDFSLKSPF 503
PS++V ++ I ++ SPF
Sbjct: 140 TAPSYMVTVEEEDKISYAKNSPF 162
Score = 58.0 bits (134), Expect = 2e-07
Identities = 24/54 (44%), Positives = 37/54 (68%)
Frame = +1
Query: 34 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLT 195
F KTY TP P+ K R+++E ++ +YGLR KREVW+ + L + R+ AR L++
Sbjct: 8 FKKTYETPNHPWIKERIEREKELCRKYGLRRKREVWKAETILRKYRRQARRLIS 61
>UniRef50_Q96YV8 Cluster: 30S ribosomal protein S4P; n=2;
Sulfolobaceae|Rep: 30S ribosomal protein S4P -
Sulfolobus tokodaii
Length = 177
Score = 70.5 bits (165), Expect = 3e-11
Identities = 37/83 (44%), Positives = 52/83 (62%)
Frame = +3
Query: 255 RIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVV 434
R+G++++ LD +LGL E++LERRLQT V+K GLA++I+ AR LI HI + + V
Sbjct: 79 RMGIIEKDNATLDDILGLNEENYLERRLQTIVYKKGLARTIYQARQLIVHGHIAIGGRRV 138
Query: 435 NIPSFIVRLDSGKHIDFSLKSPF 503
P +IV IDF SPF
Sbjct: 139 TSPGYIVMRGEEDLIDFYPTSPF 161
Score = 48.8 bits (111), Expect = 1e-04
Identities = 22/58 (37%), Positives = 34/58 (58%)
Frame = +1
Query: 25 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTL 198
P + + P P+ + L++E +IG+YGLRNKRE+W + + + R AR LL L
Sbjct: 4 PKKSRRKWEGPGHPWIRINLEKEQVLIGKYGLRNKRELWLAQTIIRKFRHQARSLLAL 61
>UniRef50_Q3LWD1 Cluster: Ribosomal protein S9; n=1; Bigelowiella
natans|Rep: Ribosomal protein S9 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 180
Score = 69.7 bits (163), Expect = 5e-11
Identities = 34/70 (48%), Positives = 48/70 (68%)
Frame = +3
Query: 288 LDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDS 467
L+ ++ + + L RRLQT V + L+K+IH ARILI +HI+V+ Q+VN PSF+VR D+
Sbjct: 95 LESIIKIDLRSILSRRLQTVVKQLKLSKTIHEARILIMHKHIQVKNQIVNKPSFLVRKDN 154
Query: 468 GKHIDFSLKS 497
I FSL S
Sbjct: 155 EIFISFSLNS 164
Score = 60.5 bits (140), Expect = 3e-08
Identities = 24/58 (41%), Positives = 42/58 (72%)
Frame = +1
Query: 34 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEK 207
+SK + P+ P+EK RL E+++I +GL+NKRE+WR ++ L+++RK A +L+ + K
Sbjct: 10 YSKIWNRPKNPYEKLRLCNEIRMINLFGLKNKRELWRTQFFLSKLRKVAEKLIYKKAK 67
>UniRef50_Q6CM19 Cluster: Similarity; n=2; Saccharomycetaceae|Rep:
Similarity - Kluyveromyces lactis (Yeast) (Candida
sphaerica)
Length = 246
Score = 69.3 bits (162), Expect = 7e-11
Identities = 36/84 (42%), Positives = 55/84 (65%)
Frame = -3
Query: 506 TERRFQREVNVLARVQAHNK*WDVHNLLADTNMPLPDQNSGMMDGLRQASFEHLRLQTTL 327
TE R EVNVL R Q+ ++ WDV +LL ++N+ L DQ+S +++ L Q L LQ++
Sbjct: 27 TEWRGSSEVNVLLRFQSDHERWDVDDLLTNSNVSLGDQDSSVVNRLGQTQLVDLGLQSSF 86
Query: 326 QEVLNLQTKHIIEFHLFFIQYSNT 255
QE+ NLQ++ II+ L F Q +N+
Sbjct: 87 QEIFNLQSQDIIQLLLVFRQDTNS 110
>UniRef50_UPI0000501C59 Cluster: UPI0000501C59 related cluster; n=1;
Rattus norvegicus|Rep: UPI0000501C59 UniRef100 entry -
Rattus norvegicus
Length = 199
Score = 66.1 bits (154), Expect = 6e-10
Identities = 40/81 (49%), Positives = 51/81 (62%), Gaps = 6/81 (7%)
Frame = +3
Query: 261 GVLDEKQMK------LDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVR 422
G+L E +MK + GL+I F E++LQTQVF+ L KSI HA +L+ HIR+
Sbjct: 85 GLLGEGKMKPRRSWFTSWAFGLRIY-FSEKQLQTQVFELVLDKSIRHACVLLCHCHIRIG 143
Query: 423 KQVVNIPSFIVRLDSGKHIDF 485
KQVV+I F V LDS KH DF
Sbjct: 144 KQVVDIAFFFVGLDSRKHTDF 164
Score = 56.4 bits (130), Expect = 5e-07
Identities = 29/42 (69%), Positives = 33/42 (78%), Gaps = 1/42 (2%)
Frame = +1
Query: 133 EVWRVKYTLARIRKAARE-LLTLEEKDPKRLFEGNALLRRLV 255
EVWRVK+TL +IRKA E LL L EKDP+ LFE N LLR+LV
Sbjct: 41 EVWRVKFTLTKIRKAFWELLLLLNEKDPRYLFEDNLLLRQLV 82
>UniRef50_Q8ZTV1 Cluster: 30S ribosomal protein S4P; n=5;
Thermoproteaceae|Rep: 30S ribosomal protein S4P -
Pyrobaculum aerophilum
Length = 159
Score = 66.1 bits (154), Expect = 6e-10
Identities = 31/67 (46%), Positives = 45/67 (67%)
Frame = +3
Query: 255 RIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVV 434
++G +++ ++LD +L L + LERRLQT V++ GLAKSIHHAR LI H+ V + V
Sbjct: 81 KMGFIEDPNVQLDRILSLDVRAILERRLQTIVYRMGLAKSIHHARQLIVHGHVAVAGRRV 140
Query: 435 NIPSFIV 455
P F+V
Sbjct: 141 TSPGFLV 147
Score = 50.4 bits (115), Expect = 3e-05
Identities = 25/55 (45%), Positives = 37/55 (67%), Gaps = 2/55 (3%)
Frame = +1
Query: 55 PRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELL--TLEEKDP 213
P++ + K L +EL+++GEYGLRNK+E+W + L I + AR LL T EE+ P
Sbjct: 16 PKKIWNKQLLLEELQLMGEYGLRNKKELWLARARLKWITRRARSLLSMTAEERAP 70
>UniRef50_Q74NF7 Cluster: 30S ribosomal protein S4P; n=5;
Archaea|Rep: 30S ribosomal protein S4P - Nanoarchaeum
equitans
Length = 180
Score = 66.1 bits (154), Expect = 6e-10
Identities = 37/86 (43%), Positives = 53/86 (61%)
Frame = +3
Query: 243 TSSGRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVR 422
T ++GVL E +LD VL L ++D LERRLQT + + GLAK++ AR I HI V
Sbjct: 74 TKLKKLGVLSENA-ELDDVLDLTVKDVLERRLQTMLVRKGLAKTMKQARQFIVHGHIMVN 132
Query: 423 KQVVNIPSFIVRLDSGKHIDFSLKSP 500
+VV+ PS++V+ + I+F SP
Sbjct: 133 GEVVDAPSYLVKKEEEDKIEFVPFSP 158
Score = 41.5 bits (93), Expect = 0.015
Identities = 20/50 (40%), Positives = 32/50 (64%)
Frame = +1
Query: 55 PRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 204
P P++K RL E +++ EYGL+NKRE+W + T+AR +A L ++
Sbjct: 11 PSHPWQKQRLIIEKRLMKEYGLKNKRELW-IAETIARKWRAYARYLNAKQ 59
>UniRef50_Q011L4 Cluster: Chromosome 09 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 09 contig 1, DNA
sequence - Ostreococcus tauri
Length = 293
Score = 65.7 bits (153), Expect = 8e-10
Identities = 35/63 (55%), Positives = 39/63 (61%)
Frame = -1
Query: 508 PPNGDFREKSMCLPESRRTINDGMFTTCLRTRICLCRIKILA*WMDFARPALNTCVCRRR 329
PP+G+ KSMC S RT G FT CL TRI RIK A D ARP+L T VC+RR
Sbjct: 56 PPSGELSAKSMCFWLSVRTKKLGTFTICLPTRIWRWRIKTRAWCTDLARPSLKTSVCKRR 115
Query: 328 SKK 320
SKK
Sbjct: 116 SKK 118
Score = 36.3 bits (80), Expect = 0.57
Identities = 19/35 (54%), Positives = 25/35 (71%)
Frame = -2
Query: 144 APYFTLVAETVLSDDLQLLVKACLFKRTTRCHVRL 40
AP +LVA+ L+DDLQL V+A L +RT+R RL
Sbjct: 167 APQLSLVAKAELTDDLQLGVEAILLERTSRLLERL 201
>UniRef50_Q97B95 Cluster: 30S ribosomal protein S4P; n=5;
Archaea|Rep: 30S ribosomal protein S4P - Thermoplasma
volcanium
Length = 200
Score = 64.9 bits (151), Expect = 1e-09
Identities = 33/77 (42%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Frame = +1
Query: 25 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAAREL-LTLE 201
P K Y TPR P+EK R+D+E KI+ +YGL+NKRE+WR + L+ IR AR L L
Sbjct: 4 PKFHHKKYSTPRHPWEKDRIDEENKILVKYGLKNKREIWRSEAMLSSIRSQARYLRARLR 63
Query: 202 EKDPKRLFEGNALLRRL 252
D + +++RL
Sbjct: 64 ASDANAQKQLERMIKRL 80
Score = 58.0 bits (134), Expect = 2e-07
Identities = 38/103 (36%), Positives = 51/103 (49%)
Frame = +3
Query: 255 RIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVV 434
R +L +K LD VL L +E+ L+RRLQT VFK LA S AR LI HI V + V
Sbjct: 82 RYKILSDKAT-LDDVLSLTVENILDRRLQTIVFKKNLALSEKQARQLITHGHITVNGRRV 140
Query: 435 NIPSFIVRLDSGKHIDFSLKSPFGGVVLDVSRGRTSARDRVAE 563
+P +V I + SP + + + S +RV E
Sbjct: 141 TVPGMLVEAQYEDTIAYYENSPIANELHPIRQALLSPAERVKE 183
>UniRef50_A6UW05 Cluster: Ribosomal protein S4; n=1; Methanococcus
aeolicus Nankai-3|Rep: Ribosomal protein S4 -
Methanococcus aeolicus Nankai-3
Length = 177
Score = 62.5 bits (145), Expect = 8e-09
Identities = 35/82 (42%), Positives = 46/82 (56%)
Frame = +3
Query: 255 RIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVV 434
R G+L ++ LD VL L +E LERRLQT VF+ GLA + AR I HI V + +
Sbjct: 79 RYGILLKEDATLDDVLSLNLESILERRLQTLVFRKGLANTPKQARQFIVHGHIAVNGKKI 138
Query: 435 NIPSFIVRLDSGKHIDFSLKSP 500
N PS++V L I + SP
Sbjct: 139 NAPSYLVPLVEEDAISYMPNSP 160
Score = 54.4 bits (125), Expect = 2e-06
Identities = 23/57 (40%), Positives = 37/57 (64%)
Frame = +1
Query: 25 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLT 195
P SKTY TP P+ R+ QE ++ +YGL NK+E+W+++ L R+ AR+L++
Sbjct: 4 PRRLSKTYDTPNHPWIGERIKQERELSNKYGLSNKKEIWKMETRLRTFRRQARKLIS 60
>UniRef50_A6MWA4 Cluster: Ribosomal subunit protein S9; n=3;
Eutheria|Rep: Ribosomal subunit protein S9 - Trichechus
manatus latirostris
Length = 30
Score = 59.7 bits (138), Expect = 5e-08
Identities = 26/30 (86%), Positives = 30/30 (100%)
Frame = +1
Query: 136 VWRVKYTLARIRKAARELLTLEEKDPKRLF 225
VWRVK+TLA+IRKAARELLTL+EKDP+RLF
Sbjct: 1 VWRVKFTLAKIRKAARELLTLDEKDPRRLF 30
>UniRef50_Q8PV18 Cluster: 30S ribosomal protein S4P; n=8;
Euryarchaeota|Rep: 30S ribosomal protein S4P -
Methanosarcina mazei (Methanosarcina frisia)
Length = 219
Score = 59.7 bits (138), Expect = 5e-08
Identities = 26/56 (46%), Positives = 38/56 (67%)
Frame = +1
Query: 25 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELL 192
P SK+Y TPR P+++AR+ E++++ YGLRNK+EVW+ L R AR+LL
Sbjct: 4 PGKKSKSYETPRHPWQEARMAAEVQLVKAYGLRNKKEVWKAASMLRMYRSEARKLL 59
Score = 59.7 bits (138), Expect = 5e-08
Identities = 31/82 (37%), Positives = 46/82 (56%)
Frame = +3
Query: 255 RIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVV 434
R G++ + +D +L LK E+ LERRLQTQV + GLA+++ AR I HI + +
Sbjct: 88 RYGII-KADANVDDILSLKTENILERRLQTQVLRLGLARTVIQARQFITHGHIAINGRKA 146
Query: 435 NIPSFIVRLDSGKHIDFSLKSP 500
IP +V + HI + SP
Sbjct: 147 TIPGMLVSKEDEMHIGYYGSSP 168
>UniRef50_Q0W1V5 Cluster: 30S ribosomal protein S4P; n=1; uncultured
methanogenic archaeon RC-I|Rep: 30S ribosomal protein
S4P - Uncultured methanogenic archaeon RC-I
Length = 205
Score = 58.4 bits (135), Expect = 1e-07
Identities = 29/81 (35%), Positives = 47/81 (58%)
Frame = +3
Query: 258 IGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVN 437
+G+L E KL+ VL LK++D +ERRLQT +++ G A SI AR I HI + + +
Sbjct: 87 LGILKE-DAKLEDVLALKVDDIMERRLQTIIYRKGFANSIKQARQFIVHGHISLNGRKIT 145
Query: 438 IPSFIVRLDSGKHIDFSLKSP 500
+P ++V + + + SP
Sbjct: 146 VPGYLVLKSEEDMLSYYVGSP 166
Score = 57.6 bits (133), Expect = 2e-07
Identities = 25/56 (44%), Positives = 35/56 (62%)
Frame = +1
Query: 25 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELL 192
P K Y TP P++KAR+D+E ++ +YGLRNK+ VW+ L + R AR LL
Sbjct: 4 PGQAKKLYDTPNHPWQKARIDEETSLVKKYGLRNKKSVWKHASDLRKYRSNARALL 59
>UniRef50_Q9HQJ6 Cluster: 30S ribosomal protein S4P; n=3;
Halobacteriaceae|Rep: 30S ribosomal protein S4P -
Halobacterium salinarium (Halobacterium halobium)
Length = 170
Score = 57.6 bits (133), Expect = 2e-07
Identities = 31/77 (40%), Positives = 46/77 (59%)
Frame = +3
Query: 255 RIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVV 434
RIG+L E++ +LD VL L++ D LERRLQT V++ GLA ++ AR + H+ V V
Sbjct: 76 RIGILSEEE-RLDDVLSLEVTDVLERRLQTVVYREGLANTMGQARQFVSHGHVTVDGSRV 134
Query: 435 NIPSFIVRLDSGKHIDF 485
PS+ V + + F
Sbjct: 135 TEPSYTVPVSEENTLAF 151
Score = 52.0 bits (119), Expect = 1e-05
Identities = 22/57 (38%), Positives = 34/57 (59%)
Frame = +1
Query: 22 VPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELL 192
+P +K Y TP P++ R+ +E ++ YGL+NK E+WR + L R+ AR LL
Sbjct: 3 LPGENTKFYETPNHPYQGERIAEESDLLSRYGLKNKEELWRAQSELRDYRREARRLL 59
>UniRef50_A0RY02 Cluster: 30S ribosomal protein S4P; n=3;
Thermoprotei|Rep: 30S ribosomal protein S4P -
Cenarchaeum symbiosum
Length = 205
Score = 56.4 bits (130), Expect = 5e-07
Identities = 37/106 (34%), Positives = 54/106 (50%)
Frame = +3
Query: 246 SSGRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRK 425
S RIG++ K LD VL L++ D L RRLQT V K + + AR + HI +
Sbjct: 76 SLARIGLVG-KDASLDDVLNLQVNDLLGRRLQTIVMKKLGFSTPYQARQAVVHGHITISD 134
Query: 426 QVVNIPSFIVRLDSGKHIDFSLKSPFGGVVLDVSRGRTSARDRVAE 563
+VV IPS+ V ++ I + S F ++ R +AR+ AE
Sbjct: 135 RVVTIPSYTVYVEEEGDIKLTGGSAFATILEKSKRAEAAAREAAAE 180
Score = 52.4 bits (120), Expect = 8e-06
Identities = 24/65 (36%), Positives = 39/65 (60%)
Frame = +1
Query: 25 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 204
P + + + P+RPF +EL+ +G +GLR KRE+W+ L+R+R AR LL L +
Sbjct: 4 PKLPRRMWRKPKRPFNYDLKMEELRTLGTFGLRTKRELWKAHTELSRVRNQARSLLALGQ 63
Query: 205 KDPKR 219
+ +R
Sbjct: 64 EVRER 68
>UniRef50_Q2NFZ4 Cluster: 30S ribosomal protein S4P; n=3;
Methanobacteriaceae|Rep: 30S ribosomal protein S4P -
Methanosphaera stadtmanae (strain DSM 3091)
Length = 182
Score = 56.0 bits (129), Expect = 7e-07
Identities = 27/67 (40%), Positives = 40/67 (59%)
Frame = +3
Query: 285 KLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLD 464
KL+ VL L +ED L RRLQ+ VFK GL+ + AR+ + HI + + +N P +V
Sbjct: 88 KLEEVLDLNVEDILRRRLQSLVFKRGLSHTAKEARLFVVHGHITLNGKKINAPGHLVEKA 147
Query: 465 SGKHIDF 485
++IDF
Sbjct: 148 DEENIDF 154
Score = 49.2 bits (112), Expect = 8e-05
Identities = 19/54 (35%), Positives = 35/54 (64%)
Frame = +1
Query: 40 KTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLE 201
K Y TP P+ R+ +E ++ +YGL+NK+E+W+ + + R R+ AR +L ++
Sbjct: 9 KQYDTPSHPWNADRIKEENRLANKYGLKNKKEIWKAESRVKRYRRDARIILGMD 62
>UniRef50_Q9SZ81 Cluster: Putative ribosomal protein; n=1;
Arabidopsis thaliana|Rep: Putative ribosomal protein -
Arabidopsis thaliana (Mouse-ear cress)
Length = 106
Score = 54.4 bits (125), Expect = 2e-06
Identities = 25/36 (69%), Positives = 31/36 (86%)
Frame = +3
Query: 270 DEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSI 377
D ++ KLDYVL L +E+FLERRLQT VFK+G+AKSI
Sbjct: 17 DSEKNKLDYVLALTVENFLERRLQTIVFKSGMAKSI 52
>UniRef50_A0SNY6 Cluster: Ribosomal protein small subunit S9; n=1;
uncultured euryarchaeote ARMAN-2|Rep: Ribosomal protein
small subunit S9 - uncultured euryarchaeote ARMAN-2
Length = 187
Score = 52.8 bits (121), Expect = 6e-06
Identities = 31/67 (46%), Positives = 41/67 (61%)
Frame = +3
Query: 255 RIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVV 434
+ G+L E L+ VL + FLERRLQT VFK GLA++I AR LI I V + V
Sbjct: 77 KFGIL-ENGATLEKVLDITPNAFLERRLQTVVFKKGLARTIKQARQLITHGFIAVNMKRV 135
Query: 435 NIPSFIV 455
+IP ++V
Sbjct: 136 SIPGYMV 142
Score = 40.3 bits (90), Expect = 0.035
Identities = 18/52 (34%), Positives = 31/52 (59%)
Frame = +1
Query: 40 KTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLT 195
+ Y P+ + AR+ + +I EYGL N E+W+V+ ++R+R R LL+
Sbjct: 9 RKYDKPKDIWNLARIKADNALIAEYGLANMHELWKVQSEISRLRGNVRVLLS 60
>UniRef50_Q0D4G1 Cluster: Os07g0628300 protein; n=2; Oryza sativa
(japonica cultivar-group)|Rep: Os07g0628300 protein -
Oryza sativa subsp. japonica (Rice)
Length = 94
Score = 49.6 bits (113), Expect = 6e-05
Identities = 23/31 (74%), Positives = 26/31 (83%)
Frame = +3
Query: 417 VRKQVVNIPSFIVRLDSGKHIDFSLKSPFGG 509
V +Q+VNIPSFIVRL+S KHI FSL SP GG
Sbjct: 27 VGRQLVNIPSFIVRLESEKHIAFSLTSPLGG 57
>UniRef50_Q82T00 Cluster: 30S ribosomal protein S4 B; n=3;
Betaproteobacteria|Rep: 30S ribosomal protein S4 B -
Nitrosomonas europaea
Length = 205
Score = 48.4 bits (110), Expect = 1e-04
Identities = 27/65 (41%), Positives = 38/65 (58%)
Frame = +3
Query: 303 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHID 482
G + LERRL VF+AG A ++ AR L+ RH+R+ + VNIPS +RL+ G I
Sbjct: 85 GETLLQLLERRLDNVVFRAGFAPTVIAARQLVSHRHVRLNGKPVNIPS--IRLNVGDEIT 142
Query: 483 FSLKS 497
+S
Sbjct: 143 IKPES 147
>UniRef50_Q8RE43 Cluster: 30S ribosomal protein S4; n=6;
Bacteria|Rep: 30S ribosomal protein S4 - Fusobacterium
nucleatum subsp. nucleatum
Length = 195
Score = 48.0 bits (109), Expect = 2e-04
Identities = 26/66 (39%), Positives = 40/66 (60%)
Frame = +3
Query: 264 VLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIP 443
+ +E KL V GL + ++LERRL+ V++ G AK+ AR ++ HI V + VNI
Sbjct: 67 IYEEAARKLG-VTGLTLIEYLERRLENVVYRLGFAKTRRQARQIVSHGHIAVNGRRVNIA 125
Query: 444 SFIVRL 461
SF V++
Sbjct: 126 SFRVKV 131
>UniRef50_A5BYX8 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 187
Score = 47.2 bits (107), Expect = 3e-04
Identities = 23/53 (43%), Positives = 32/53 (60%)
Frame = +1
Query: 34 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELL 192
+ KT+ R + K LD ELK IG Y LR KRE+W V+ +LA ++K L+
Sbjct: 119 YGKTFKESRSSYGKGFLDAELKFIGGYELRCKRELWSVQMSLAALQKYFSSLM 171
>UniRef50_O21263 Cluster: Mitochondrial ribosomal protein S4; n=1;
Reclinomonas americana|Rep: Mitochondrial ribosomal
protein S4 - Reclinomonas americana
Length = 249
Score = 47.2 bits (107), Expect = 3e-04
Identities = 19/53 (35%), Positives = 34/53 (64%)
Frame = +3
Query: 300 LGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 458
+G + LERRL +++AG SI+ AR+L+ +H+ V ++ NI S++V+
Sbjct: 123 IGDNLIKMLERRLDIIIYRAGFVNSIYQARLLVNHKHVLVNNKIQNISSYLVQ 175
>UniRef50_Q4AEQ5 Cluster: Ribosomal protein S4:RNA-binding S4; n=1;
Chlorobium phaeobacteroides BS1|Rep: Ribosomal protein
S4:RNA-binding S4 - Chlorobium phaeobacteroides BS1
Length = 134
Score = 46.4 bits (105), Expect = 5e-04
Identities = 21/51 (41%), Positives = 31/51 (60%)
Frame = +3
Query: 297 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 449
+ G + F+E RL V++ G+A + AR L+ RHI V Q+VN+PSF
Sbjct: 82 ITGENLLKFIEARLDNTVYRLGIAPTRSGARQLVSHRHITVNGQIVNVPSF 132
>UniRef50_Q6AP44 Cluster: 30S ribosomal protein S4; n=37;
Bacteria|Rep: 30S ribosomal protein S4 - Desulfotalea
psychrophila
Length = 210
Score = 45.6 bits (103), Expect = 0.001
Identities = 28/75 (37%), Positives = 40/75 (53%)
Frame = +3
Query: 297 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKH 476
V G + LERRL VF+AG A S AR ++R +HI + + V+IPS+ ++ G
Sbjct: 88 VAGENLLILLERRLDNAVFRAGFASSRTQARQIVRHKHILINGKRVDIPSY--QVSEGDV 145
Query: 477 IDFSLKSPFGGVVLD 521
I KS V+D
Sbjct: 146 ISLREKSRANAGVVD 160
>UniRef50_P48270 Cluster: Chloroplast 30S ribosomal protein S4; n=2;
Chlorophyceae|Rep: Chloroplast 30S ribosomal protein S4
- Chlamydomonas reinhardtii
Length = 257
Score = 45.6 bits (103), Expect = 0.001
Identities = 25/61 (40%), Positives = 34/61 (55%)
Frame = +3
Query: 276 KQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 455
K K+ G + FLE RL VF+ +A +I AR LI HIRV + VNIPS++
Sbjct: 92 KAKKIKESTGQVLLQFLEMRLDNIVFRLNMAPTIPAARQLISHGHIRVNNKKVNIPSYMC 151
Query: 456 R 458
+
Sbjct: 152 K 152
>UniRef50_A5KQD5 Cluster: Putative uncharacterized protein; n=2;
Ruminococcus|Rep: Putative uncharacterized protein -
Ruminococcus torques ATCC 27756
Length = 181
Score = 44.8 bits (101), Expect = 0.002
Identities = 20/61 (32%), Positives = 37/61 (60%)
Frame = +3
Query: 276 KQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 455
K +++ + G + LE RL +F+ GLA++ AR ++ +H+ V + VNIPS++V
Sbjct: 53 KAKQMEGMTGENLMRILESRLDNVIFRMGLARTRKEARQIVDHKHVLVNGKQVNIPSYLV 112
Query: 456 R 458
+
Sbjct: 113 K 113
>UniRef50_P59129 Cluster: 30S ribosomal protein S4; n=19;
Bacteria|Rep: 30S ribosomal protein S4 - Chlorobium
tepidum
Length = 203
Score = 44.8 bits (101), Expect = 0.002
Identities = 27/67 (40%), Positives = 36/67 (53%)
Frame = +3
Query: 297 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKH 476
V G + LERRL V++ G + S AR L+ H+ V + VNIPSF+V G
Sbjct: 82 VTGDNLVKMLERRLDNVVYRCGFSPSRAGARQLVTHGHMLVNGKKVNIPSFLV--SPGDQ 139
Query: 477 IDFSLKS 497
I+F KS
Sbjct: 140 IEFRQKS 146
>UniRef50_O66484 Cluster: 30S ribosomal protein S4; n=17;
Bacteria|Rep: 30S ribosomal protein S4 - Aquifex
aeolicus
Length = 211
Score = 43.2 bits (97), Expect = 0.005
Identities = 24/65 (36%), Positives = 36/65 (55%)
Frame = +3
Query: 303 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHID 482
G + +LERRL V++ G A + AR L+ H+ V + VNIPS++V + G I+
Sbjct: 89 GEMLLQYLERRLDNVVYRLGFASTRRQARQLVAHGHVLVNGKKVNIPSYLV--EPGDVIE 146
Query: 483 FSLKS 497
KS
Sbjct: 147 IKEKS 151
>UniRef50_Q0TMU2 Cluster: 30S ribosomal protein S4 B; n=13;
Clostridiaceae|Rep: 30S ribosomal protein S4 B -
Clostridium perfringens (strain ATCC 13124 / NCTC 8237 /
Type A)
Length = 197
Score = 42.3 bits (95), Expect = 0.009
Identities = 24/58 (41%), Positives = 31/58 (53%)
Frame = +3
Query: 324 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKS 497
LE RL V++ G A SI AR ++ H V + VNIPSF RL+ G + KS
Sbjct: 86 LESRLDNMVYRMGFASSIRQARQMVNHGHFLVNGKKVNIPSF--RLNIGDEVVLREKS 141
>UniRef50_P58134 Cluster: Plastid 30S ribosomal protein S4; n=2;
Eukaryota|Rep: Plastid 30S ribosomal protein S4 -
Astasia longa (Euglenophycean alga)
Length = 206
Score = 42.3 bits (95), Expect = 0.009
Identities = 26/59 (44%), Positives = 34/59 (57%)
Frame = +3
Query: 273 EKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 449
+K +KL G + LE RL V++ GLA +I +R LI HI V +VVNIPSF
Sbjct: 74 KKAIKLKGSSGENLLVALEMRLDNIVYRLGLAPTIISSRQLINHGHIYVDGKVVNIPSF 132
>UniRef50_A6DLN6 Cluster: 30S ribosomal protein S4; n=1;
Lentisphaera araneosa HTCC2155|Rep: 30S ribosomal
protein S4 - Lentisphaera araneosa HTCC2155
Length = 205
Score = 41.9 bits (94), Expect = 0.012
Identities = 31/90 (34%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Frame = +3
Query: 273 EKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 452
++ KL V G + LE RL V++ G A + AR L+ HIR+ + NIPS+
Sbjct: 77 DRAAKLSGVTGNNLMVLLEARLDNVVYRLGFAPTRSAARQLVGHGHIRINGRRCNIPSYS 136
Query: 453 VRL-DSGKHIDFSLKSPFGGVVLDVSRGRT 539
VR D D S LD +RG T
Sbjct: 137 VRPGDVVSLKDSSRSKALVQRFLDGARGET 166
>UniRef50_Q5YGE8 Cluster: Small ribosomal protein 4; n=1;
Calycularia crispula|Rep: Small ribosomal protein 4 -
Calycularia crispula
Length = 197
Score = 41.5 bits (93), Expect = 0.015
Identities = 19/49 (38%), Positives = 28/49 (57%)
Frame = +3
Query: 303 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 449
G + LE RL +F+ G+A +I AR L+ RHI + V+IPS+
Sbjct: 76 GQVLLQLLEMRLDNTIFRLGMASTIPGARQLVSHRHILINNDAVDIPSY 124
>UniRef50_A5USG3 Cluster: Ribosomal protein S4; n=4;
Chloroflexaceae|Rep: Ribosomal protein S4 - Roseiflexus
sp. RS-1
Length = 206
Score = 41.1 bits (92), Expect = 0.020
Identities = 23/63 (36%), Positives = 32/63 (50%)
Frame = +3
Query: 273 EKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 452
EK + G + LERRL V++ G A + AR L+ HI V + NIPS+
Sbjct: 75 EKAQRFPGETGAYLFILLERRLDNVVYRLGFATTRAQARQLVSHGHITVNGRKTNIPSYT 134
Query: 453 VRL 461
VR+
Sbjct: 135 VRV 137
>UniRef50_Q5DQ32 Cluster: Ribosomal protein small subunit 4; n=6;
Filicales|Rep: Ribosomal protein small subunit 4 -
Asplenium trichomanes subsp. inexpectans
Length = 169
Score = 40.7 bits (91), Expect = 0.027
Identities = 23/61 (37%), Positives = 32/61 (52%)
Frame = +3
Query: 267 LDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPS 446
L+ KQ + G LE RL +F G+A +I AR L+ RHI V +V+IPS
Sbjct: 35 LEAKQRRTRGSTGQVPLQLLEMRLDNVLFHLGMASTIPAARQLVNHRHILVNNCIVDIPS 94
Query: 447 F 449
+
Sbjct: 95 Y 95
>UniRef50_Q74K05 Cluster: 30S ribosomal protein S4; n=107; cellular
organisms|Rep: 30S ribosomal protein S4 - Lactobacillus
johnsonii
Length = 203
Score = 40.7 bits (91), Expect = 0.027
Identities = 25/65 (38%), Positives = 36/65 (55%)
Frame = +3
Query: 303 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHID 482
G+ LERRL V++ GLA + AR L+ HI V + V+IPS+ V++ G+ I
Sbjct: 84 GVNFMALLERRLDNIVYRLGLASTREQARQLVNHGHILVDGKRVDIPSYEVKV--GQEIS 141
Query: 483 FSLKS 497
KS
Sbjct: 142 LRDKS 146
>UniRef50_A3HXD0 Cluster: 30S ribosomal protein S4; n=1;
Algoriphagus sp. PR1|Rep: 30S ribosomal protein S4 -
Algoriphagus sp. PR1
Length = 201
Score = 40.3 bits (90), Expect = 0.035
Identities = 18/54 (33%), Positives = 32/54 (59%)
Frame = +3
Query: 297 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 458
+ G + LE RL V++ G++ + AR L+ +HI V ++VNIPS+ ++
Sbjct: 81 ITGENLLQLLEARLDNTVYRMGISPTRRGARQLVSHKHILVNGELVNIPSYSLK 134
>UniRef50_A4EA85 Cluster: Putative uncharacterized protein; n=1;
Collinsella aerofaciens ATCC 25986|Rep: Putative
uncharacterized protein - Collinsella aerofaciens ATCC
25986
Length = 198
Score = 39.9 bits (89), Expect = 0.047
Identities = 22/61 (36%), Positives = 33/61 (54%)
Frame = +3
Query: 276 KQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 455
K K++ V G + LE RL VF+ G A++ AR +R H V + V+IPS+ V
Sbjct: 70 KARKMNGVTGENLMIILESRLDNVVFRLGFARTRKEARQSVRHGHFTVNGKRVDIPSYRV 129
Query: 456 R 458
+
Sbjct: 130 K 130
>UniRef50_Q7YLR6 Cluster: Small ribosomal protein 4; n=10;
Coniferales|Rep: Small ribosomal protein 4 - Podocarpus
latifolius
Length = 222
Score = 39.9 bits (89), Expect = 0.047
Identities = 20/49 (40%), Positives = 30/49 (61%)
Frame = +3
Query: 303 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 449
G + LE RL +F+ G+A +I AR L+ RHI V ++V+IPS+
Sbjct: 66 GQVLLQLLEMRLDNILFRLGMALTIPGARQLVNHRHILVNGRMVDIPSY 114
>UniRef50_A7QX06 Cluster: Chromosome chr14 scaffold_211, whole
genome shotgun sequence; n=2; Vitis vinifera|Rep:
Chromosome chr14 scaffold_211, whole genome shotgun
sequence - Vitis vinifera (Grape)
Length = 276
Score = 39.9 bits (89), Expect = 0.047
Identities = 19/56 (33%), Positives = 31/56 (55%)
Frame = +3
Query: 285 KLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 452
K + +G + LE L +F+ G+A +I AR L+ RHI V ++V+IP +
Sbjct: 195 KAKWAIGRVLLQLLEMHLDNILFRLGMASTILGARQLVNHRHILVNGRIVDIPRLV 250
>UniRef50_Q9G884 Cluster: Ribosomal protein S4; n=1; Malawimonas
jakobiformis|Rep: Ribosomal protein S4 - Malawimonas
jakobiformis
Length = 225
Score = 39.9 bits (89), Expect = 0.047
Identities = 19/48 (39%), Positives = 28/48 (58%)
Frame = +3
Query: 318 DFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRL 461
+ LERRL T +F+ A S +AR LI HI + +VN+ S +V +
Sbjct: 107 NLLERRLDTILFRINWASSFFNARQLINHGHILINGNIVNVSSHLVNI 154
>UniRef50_Q2JUD6 Cluster: 30S ribosomal protein S4; n=2041; cellular
organisms|Rep: 30S ribosomal protein S4 - Synechococcus
sp. (strain JA-3-3Ab) (Cyanobacteria
bacteriumYellowstone A-Prime)
Length = 203
Score = 39.9 bits (89), Expect = 0.047
Identities = 21/49 (42%), Positives = 28/49 (57%)
Frame = +3
Query: 303 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 449
GL + LE RL VF+ G+A +I AR L+ HI V + V IPS+
Sbjct: 83 GLALLQMLEMRLDCIVFRLGMAPTIPAARQLVSHGHIEVNGRKVTIPSY 131
>UniRef50_Q1CXF1 Cluster: 30S ribosomal protein S4 B; n=2;
Cystobacterineae|Rep: 30S ribosomal protein S4 B -
Myxococcus xanthus (strain DK 1622)
Length = 210
Score = 39.9 bits (89), Expect = 0.047
Identities = 23/61 (37%), Positives = 33/61 (54%)
Frame = +3
Query: 303 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHID 482
G + LE RL + V +AGLA SI AR +R ++ V + +IPSF R+ G +
Sbjct: 89 GTVLLQLLESRLDSLVLRAGLATSIRQARQFVRHGYLHVDGKRADIPSF--RVKPGSEVR 146
Query: 483 F 485
F
Sbjct: 147 F 147
>UniRef50_A7AVJ4 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3-like protein; n=1; Babesia bovis|Rep: U3
small nucleolar ribonucleoprotein protein IMP3-like
protein - Babesia bovis
Length = 195
Score = 39.1 bits (87), Expect = 0.081
Identities = 24/72 (33%), Positives = 35/72 (48%)
Frame = +3
Query: 321 FLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSP 500
F RRL T + + + + A I Q HIRV VVNIP++ V + HI ++ S
Sbjct: 116 FCRRRLATVLVQRKFCEHLKQAVTYIEQGHIRVGLDVVNIPAYHVTRELEDHITWAQGSK 175
Query: 501 FGGVVLDVSRGR 536
V+D + R
Sbjct: 176 IKEKVVDFTGAR 187
>UniRef50_Q9XQQ7 Cluster: Apicoplast 30S ribosomal protein S4; n=1;
Toxoplasma gondii|Rep: Apicoplast 30S ribosomal protein
S4 - Toxoplasma gondii
Length = 198
Score = 39.1 bits (87), Expect = 0.081
Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Frame = +3
Query: 267 LDEKQMK--LDYVLGLKIEDFL---ERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQV 431
L E Q+K Y+ LKI + + E RL +F+ G AKSI+ AR LI I + +
Sbjct: 59 LKENQIKKYFKYIKLLKIFNLIQIIELRLDATIFRLGFAKSINQARQLITHGFIFINSIL 118
Query: 432 VNIPSFIV 455
V PSFI+
Sbjct: 119 VKKPSFIL 126
>UniRef50_P56799 Cluster: Chloroplast 30S ribosomal protein S4;
n=1123; Embryophyta|Rep: Chloroplast 30S ribosomal
protein S4 - Arabidopsis thaliana (Mouse-ear cress)
Length = 201
Score = 38.7 bits (86), Expect = 0.11
Identities = 19/49 (38%), Positives = 29/49 (59%)
Frame = +3
Query: 303 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 449
G + LE RL +F+ G+A +I AR L+ HI V ++V+IPS+
Sbjct: 80 GQVLLQLLEMRLDNILFRLGMALTIPQARQLVNHGHILVNGRIVDIPSY 128
>UniRef50_Q2GDI3 Cluster: 30S ribosomal protein S4; n=8;
Rickettsiales|Rep: 30S ribosomal protein S4 -
Neorickettsia sennetsu (strain Miyayama)
Length = 205
Score = 37.9 bits (84), Expect = 0.19
Identities = 16/45 (35%), Positives = 30/45 (66%)
Frame = +3
Query: 324 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 458
LE R+ + ++++G+ +I AR LI +H+ V ++VNI SF ++
Sbjct: 91 LESRVSSVLYRSGMVPTIFAARQLISHKHVTVNGEIVNICSFTLK 135
>UniRef50_A0JX91 Cluster: 30S ribosomal protein S4; n=20;
Actinobacteria (class)|Rep: 30S ribosomal protein S4 -
Arthrobacter sp. (strain FB24)
Length = 208
Score = 37.9 bits (84), Expect = 0.19
Identities = 23/61 (37%), Positives = 33/61 (54%)
Frame = +3
Query: 273 EKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 452
E+ + + G + + LE RL V +AG A++I AR L+ RHI V V+ PSF
Sbjct: 76 EEARRTKGLTGENLIELLEMRLDALVLRAGFARTIAQARQLVVHRHILVDGIRVDRPSFR 135
Query: 453 V 455
V
Sbjct: 136 V 136
>UniRef50_Q06J34 Cluster: Chloroplast 30S ribosomal protein S4; n=1;
Bigelowiella natans|Rep: Chloroplast 30S ribosomal
protein S4 - Bigelowiella natans (Pedinomonas
minutissima) (Chlorarachnion sp.(strain CCMP 621))
Length = 194
Score = 37.9 bits (84), Expect = 0.19
Identities = 19/49 (38%), Positives = 27/49 (55%)
Frame = +3
Query: 303 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 449
G K+ LE RL T +++ G ++ AR LI HI V + V+IP F
Sbjct: 75 GDKLLQLLEMRLDTLLYRTGFVPTVASARQLISHGHINVNGKKVDIPGF 123
>UniRef50_Q9XPI8 Cluster: Ribosomal protein S4; n=2; Dictyostelium
discoideum|Rep: Ribosomal protein S4 - Dictyostelium
discoideum (Slime mold)
Length = 300
Score = 37.5 bits (83), Expect = 0.25
Identities = 18/77 (23%), Positives = 42/77 (54%)
Frame = +3
Query: 324 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPF 503
LE+R+ + ++G +S++ AR +I +H+ V ++ ++P +++ + G I F S
Sbjct: 144 LEKRVDMVLLRSGFVRSLYEARQIINHKHLLVNGKIASLPGYMINV--GDIISFKEGSMK 201
Query: 504 GGVVLDVSRGRTSARDR 554
++ + +G S + R
Sbjct: 202 RKLLKRLKKGLISKKSR 218
>UniRef50_O01513 Cluster: Putative 40S ribosomal protein S4-like;
n=4; Bilateria|Rep: Putative 40S ribosomal protein
S4-like - Caenorhabditis elegans
Length = 183
Score = 37.5 bits (83), Expect = 0.25
Identities = 21/72 (29%), Positives = 36/72 (50%)
Frame = +3
Query: 321 FLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSP 500
F RRL + G+ +S+ A L+ Q H+R+ ++V P+F+V S I ++ S
Sbjct: 105 FARRRLPVVMRNIGMCESVKTASDLVEQGHVRIGTKLVTDPAFMVTRSSEDMITWTKASK 164
Query: 501 FGGVVLDVSRGR 536
V+D + R
Sbjct: 165 IKKHVMDYNNTR 176
>UniRef50_Q7NAV0 Cluster: 30S ribosomal protein S4; n=11;
Mollicutes|Rep: 30S ribosomal protein S4 - Mycoplasma
gallisepticum
Length = 207
Score = 37.5 bits (83), Expect = 0.25
Identities = 20/61 (32%), Positives = 32/61 (52%)
Frame = +3
Query: 285 KLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLD 464
K+ +L + + LE RL VF+ G A + AR L+ H+ V + +IPS ++ L
Sbjct: 82 KMSGILTMNLFRTLESRLDNLVFRMGFAPTRRGARQLVSHGHVLVNGKTFDIPSALISLG 141
Query: 465 S 467
S
Sbjct: 142 S 142
>UniRef50_Q9X1I3 Cluster: 30S ribosomal protein S4; n=14;
Bacteria|Rep: 30S ribosomal protein S4 - Thermotoga
maritima
Length = 209
Score = 37.1 bits (82), Expect = 0.33
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = +3
Query: 324 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 458
LE RL V++ G A + AR L+ H V + VNIPS+++R
Sbjct: 96 LEARLDNVVYRMGFAINRRQARQLVNHGHFLVNGKKVNIPSYLLR 140
>UniRef50_O51560 Cluster: 30S ribosomal protein S4; n=3; Borrelia
burgdorferi group|Rep: 30S ribosomal protein S4 -
Borrelia burgdorferi (Lyme disease spirochete)
Length = 209
Score = 37.1 bits (82), Expect = 0.33
Identities = 21/54 (38%), Positives = 30/54 (55%)
Frame = +3
Query: 297 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 458
V G + LERR+ V++AG A S HAR ++ I + + V IPS I+R
Sbjct: 85 VTGDNLLSILERRIDNVVYRAGFAISRAHARQIVSHGIIILNGRRVTIPSIILR 138
>UniRef50_Q8SRU8 Cluster: U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN; n=1;
Encephalitozoon cuniculi|Rep: U3 SMALL NUCLEOLAR
RIBONUCLEOPROTEIN - Encephalitozoon cuniculi
Length = 180
Score = 36.3 bits (80), Expect = 0.57
Identities = 21/60 (35%), Positives = 32/60 (53%)
Frame = +1
Query: 103 IGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVVLEYWMKNR 282
I +YGLR++ E + + ++RK A L L+E DP R L+ RL + +KNR
Sbjct: 32 IAKYGLRDREEYTKYSRIVGKVRKLAEALARLKESDPVRTTITKKLVGRLYSVGV-IKNR 90
>UniRef50_Q9Z5U7 Cluster: 30S ribosomal protein S4; n=5;
Alphaproteobacteria|Rep: 30S ribosomal protein S4 -
Zymomonas mobilis
Length = 204
Score = 36.3 bits (80), Expect = 0.57
Identities = 32/98 (32%), Positives = 45/98 (45%), Gaps = 8/98 (8%)
Frame = +3
Query: 252 GRIGVLDEKQMKLDYVLGLKIED--------FLERRLQTQVFKAGLAKSIHHARILIRQR 407
G G + EKQ + Y K++ LERRL V++A A +I AR L+
Sbjct: 60 GYYGDVTEKQFRRSYDDASKLKGDTSQNLIGILERRLDMIVYRAKFAPTIFAARQLVSHG 119
Query: 408 HIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGVVLD 521
HIRV NI S R++ G I K+ +VL+
Sbjct: 120 HIRVNGVKCNIAS--RRVNPGDEISLGSKAQEMALVLE 155
>UniRef50_Q5LNM2 Cluster: 30S ribosomal protein S4; n=86;
Bacteria|Rep: 30S ribosomal protein S4 - Silicibacter
pomeroyi
Length = 206
Score = 36.3 bits (80), Expect = 0.57
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = +3
Query: 303 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 458
G + LERRL V++A ++ AR + H+ V + VNIPS+ V+
Sbjct: 85 GENLIGLLERRLDAVVYRAKFVPTVFAARQFVNHGHVLVNGKRVNIPSYRVK 136
>UniRef50_Q92BB2 Cluster: 30S ribosomal protein S4; n=35;
Bacteria|Rep: 30S ribosomal protein S4 - Listeria
innocua
Length = 200
Score = 36.3 bits (80), Expect = 0.57
Identities = 19/44 (43%), Positives = 28/44 (63%)
Frame = +3
Query: 324 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 455
LE+RL V++ GLA++ AR L+ HI V + V+IPS+ V
Sbjct: 90 LEQRLDNIVYRLGLARTRRAARQLVNHGHITVDGKRVDIPSYQV 133
>UniRef50_Q06SJ3 Cluster: Chloroplast 30S ribosomal protein S4; n=1;
Stigeoclonium helveticum|Rep: Chloroplast 30S ribosomal
protein S4 - Stigeoclonium helveticum (Green alga)
Length = 2922
Score = 36.3 bits (80), Expect = 0.57
Identities = 19/42 (45%), Positives = 25/42 (59%)
Frame = +3
Query: 324 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 449
LE RL VF+ +A +I AR LI HI + K+ V IPS+
Sbjct: 109 LEMRLDNIVFRLHMAPTIKAARQLISHGHILINKKKVTIPSY 150
>UniRef50_P36128 Cluster: Putative uncharacterized protein YKR033C;
n=1; Saccharomyces cerevisiae|Rep: Putative
uncharacterized protein YKR033C - Saccharomyces
cerevisiae (Baker's yeast)
Length = 141
Score = 35.9 bits (79), Expect = 0.76
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = -2
Query: 438 CSQLACGHEYAFAGSKFWHDGWTSPGQL*TPASAD 334
CS L H +FWH GW+SP Q TPA+A+
Sbjct: 90 CSSLL--HRGVLTVKQFWHVGWSSPSQSSTPAAAE 122
>UniRef50_Q2JFE9 Cluster: 30S ribosomal protein S4; n=25;
Bacteria|Rep: 30S ribosomal protein S4 - Frankia sp.
(strain CcI3)
Length = 209
Score = 35.9 bits (79), Expect = 0.76
Identities = 18/49 (36%), Positives = 28/49 (57%)
Frame = +3
Query: 303 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 449
G ++ LE RL V++ G A S AR +R H++V + V+IPS+
Sbjct: 89 GDELLKILESRLDNVVYRGGFAPSRDAARQAVRHGHVQVNGRKVDIPSY 137
>UniRef50_Q6MIP0 Cluster: 30S ribosomal protein S4 B; n=1;
Bdellovibrio bacteriovorus|Rep: 30S ribosomal protein S4
B - Bdellovibrio bacteriovorus
Length = 208
Score = 35.5 bits (78), Expect = 1.0
Identities = 19/48 (39%), Positives = 28/48 (58%)
Frame = +3
Query: 318 DFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRL 461
+ LE+RL VF+ G A SI AR L+ + V + VNI S I+++
Sbjct: 91 NLLEKRLDNVVFRLGFASSIPAARQLVSHGKVLVNGKKVNIGSQIIKV 138
>UniRef50_O22029 Cluster: Chloroplast 30S ribosomal protein S4; n=3;
Cyanidiaceae|Rep: Chloroplast 30S ribosomal protein S4 -
Cyanidium caldarium
Length = 192
Score = 35.5 bits (78), Expect = 1.0
Identities = 18/49 (36%), Positives = 28/49 (57%)
Frame = +3
Query: 303 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 449
GL + LE RL V++AG A ++ AR L+ H++V + V I S+
Sbjct: 82 GLALLTMLETRLDHLVYRAGFAPTLPAARQLVNHGHVKVNGKKVTIASW 130
>UniRef50_Q9NV31 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3; n=13; Euteleostomi|Rep: U3 small nucleolar
ribonucleoprotein protein IMP3 - Homo sapiens (Human)
Length = 184
Score = 35.5 bits (78), Expect = 1.0
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +3
Query: 321 FLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 455
F RRL T + K +A+ + A + Q H+RV VV P+F+V
Sbjct: 106 FCRRRLPTVLLKLRMAQHLQAAVAFVEQGHVRVGPDVVTDPAFLV 150
Score = 33.1 bits (72), Expect = 5.3
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +1
Query: 91 ELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVVL 261
EL+++ Y L+ + + R +R+ AR L L E+D R+ ALL +L L
Sbjct: 30 ELRVLRRYRLQRREDYTRYNQLSRAVRELARRLRDLPERDQFRVRASAALLDKLYAL 86
>UniRef50_UPI0000498936 Cluster: U3 small nucleolar
ribonucleoprotein subunit; n=2; Entamoeba histolytica
HM-1:IMSS|Rep: U3 small nucleolar ribonucleoprotein
subunit - Entamoeba histolytica HM-1:IMSS
Length = 186
Score = 35.1 bits (77), Expect = 1.3
Identities = 20/66 (30%), Positives = 32/66 (48%)
Frame = +3
Query: 258 IGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVN 437
+GV+ + L + + DF RRL V + + A LI+Q HI+V V+
Sbjct: 85 LGVIILPEKGLHMIDVIHASDFCRRRLAIVVKAKKMVTDVTQAETLIQQGHIKVGPDVIR 144
Query: 438 IPSFIV 455
P++IV
Sbjct: 145 NPAYIV 150
>UniRef50_Q9VNR6 Cluster: CG11238-PA; n=2; Sophophora|Rep:
CG11238-PA - Drosophila melanogaster (Fruit fly)
Length = 585
Score = 35.1 bits (77), Expect = 1.3
Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Frame = -3
Query: 353 EHLRLQTTLQEV---LNLQTKHIIEFHLFFIQYSNTTRRRRRALPSNN 219
E+ RLQ LQE LNLQT+ EF +Q S T+RRR + N
Sbjct: 423 ENERLQRELQEARAELNLQTRRASEFEQQLLQLSETSRRREALATTTN 470
>UniRef50_Q17AL1 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3 (U3 snoRNP protein IMP3), putative; n=3;
Coelomata|Rep: U3 small nucleolar ribonucleoprotein
protein IMP3 (U3 snoRNP protein IMP3), putative - Aedes
aegypti (Yellowfever mosquito)
Length = 181
Score = 35.1 bits (77), Expect = 1.3
Identities = 18/66 (27%), Positives = 34/66 (51%)
Frame = +3
Query: 258 IGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVN 437
+G++ K L+ + F RRL + + +++++ HA +I H+RV VV
Sbjct: 85 LGLIPTK-WDLENASKISASSFCRRRLPVVLLRNKMSENLKHATQMIEHGHVRVGTDVVK 143
Query: 438 IPSFIV 455
P+F+V
Sbjct: 144 DPAFLV 149
>UniRef50_A6YGA2 Cluster: Ribosomal protein S4; n=30; cellular
organisms|Rep: Ribosomal protein S4 - Leptosira
terrestris (Pleurastrum terrestre)
Length = 221
Score = 34.7 bits (76), Expect = 1.8
Identities = 19/49 (38%), Positives = 27/49 (55%)
Frame = +3
Query: 303 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 449
G + LE RL VF+ G+A +I AR L+ HI V + V+I S+
Sbjct: 94 GETLLQLLEMRLDNIVFRLGMAPTIPAARQLVNHGHIVVNNKKVDISSY 142
>UniRef50_Q8IKM0 Cluster: Ribosomal protein S4, putative; n=1;
Plasmodium falciparum 3D7|Rep: Ribosomal protein S4,
putative - Plasmodium falciparum (isolate 3D7)
Length = 159
Score = 34.7 bits (76), Expect = 1.8
Identities = 17/61 (27%), Positives = 31/61 (50%)
Frame = +3
Query: 306 LKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDF 485
+ + F RRL +F+ ++I A I+ +IR+ V+N PSF + + HI +
Sbjct: 75 ITVSSFCRRRLAVLLFRLKFVQTIKLAITYIQHGNIRIGNNVINNPSFHINRNMEDHIKW 134
Query: 486 S 488
+
Sbjct: 135 A 135
>UniRef50_Q7R0S4 Cluster: GLP_186_71509_70955; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_186_71509_70955 - Giardia lamblia
ATCC 50803
Length = 184
Score = 34.7 bits (76), Expect = 1.8
Identities = 21/66 (31%), Positives = 31/66 (46%)
Frame = +3
Query: 258 IGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVN 437
+GV+D Q LD + L L RRL + K + + I ++Q H+RV VV
Sbjct: 84 MGVVDNAQASLDDISKLNSSALLLRRLPCIMMKLKMVQKIQDGVRFVKQGHVRVGPNVVV 143
Query: 438 IPSFIV 455
P+ V
Sbjct: 144 NPALHV 149
>UniRef50_P32899 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3; n=34; Eukaryota|Rep: U3 small nucleolar
ribonucleoprotein protein IMP3 - Saccharomyces
cerevisiae (Baker's yeast)
Length = 183
Score = 34.7 bits (76), Expect = 1.8
Identities = 19/66 (28%), Positives = 33/66 (50%)
Frame = +3
Query: 258 IGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVN 437
+GVL K D + + RRL + + +A++I A I Q H+RV ++N
Sbjct: 85 MGVLTTKSKISDLENKVTVSAICRRRLPVIMHRLKMAETIQDAVKFIEQGHVRVGPNLIN 144
Query: 438 IPSFIV 455
P+++V
Sbjct: 145 DPAYLV 150
>UniRef50_A7RWV6 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 739
Score = 34.3 bits (75), Expect = 2.3
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +2
Query: 365 GEVHPSCQNFDPAKAYSCPQASCEHPIIYCAP 460
G VHPSC + D + CP +CE P + C P
Sbjct: 136 GNVHPSCSDADGTSSSCCPPLTCE-PDMMCNP 166
>UniRef50_Q4P328 Cluster: Helicase SWR1; n=1; Ustilago maydis|Rep:
Helicase SWR1 - Ustilago maydis (Smut fungus)
Length = 1830
Score = 34.3 bits (75), Expect = 2.3
Identities = 19/60 (31%), Positives = 33/60 (55%)
Frame = +1
Query: 70 EKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRR 249
EK ++ L+ + ++ LR + WR+ + R RKAA E E+ D ++L NA+L +
Sbjct: 615 EKKAEERRLRALAKWTLREVLKQWRLAVNVVRARKAAAEKAEKEKSDKEQL---NAILEQ 671
>UniRef50_P46743 Cluster: Mitochondrial ribosomal protein S4; n=1;
Prototheca wickerhamii|Rep: Mitochondrial ribosomal
protein S4 - Prototheca wickerhamii
Length = 511
Score = 34.3 bits (75), Expect = 2.3
Identities = 20/54 (37%), Positives = 30/54 (55%)
Frame = +3
Query: 324 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDF 485
+E+RL ++++G K+I AR R I V +V IPS I L+SG I +
Sbjct: 200 IEKRLDVVLYRSGFTKTIVAARQACRHSQIYVNSKVCRIPSTI--LESGDIISY 251
>UniRef50_UPI0000084740 Cluster: lethal (2) 35Bb CG31834-PA; n=1;
Drosophila melanogaster|Rep: lethal (2) 35Bb CG31834-PA
- Drosophila melanogaster
Length = 291
Score = 33.9 bits (74), Expect = 3.1
Identities = 22/54 (40%), Positives = 30/54 (55%)
Frame = +3
Query: 312 IEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGK 473
I DF RL TQ F+ KSIH++ +++ +KQ+ NIP FI R GK
Sbjct: 149 IADFGTARL-TQ-FRRTSTKSIHNSTASCQRQKEEKKKQIQNIPRFIPRKKKGK 200
>UniRef50_A5BPM7 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 103
Score = 33.5 bits (73), Expect = 4.0
Identities = 15/23 (65%), Positives = 17/23 (73%)
Frame = +3
Query: 441 PSFIVRLDSGKHIDFSLKSPFGG 509
PSF+VR+DS K D SL SP GG
Sbjct: 24 PSFLVRMDSRKRGDSSLTSPLGG 46
>UniRef50_Q5KLM6 Cluster: Nam9 protein, mitochondrial, putative;
n=2; Filobasidiella neoformans|Rep: Nam9 protein,
mitochondrial, putative - Cryptococcus neoformans
(Filobasidiella neoformans)
Length = 317
Score = 33.1 bits (72), Expect = 5.3
Identities = 13/44 (29%), Positives = 28/44 (63%)
Frame = +3
Query: 324 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 455
+ERRL +F++ A+++ AR + Q H+++ QV+ P+ ++
Sbjct: 140 IERRLDVLIFRSCFAQNVWEARRYVVQGHVKLNGQVMRNPNIML 183
>UniRef50_P98196 Cluster: Probable phospholipid-transporting ATPase
IH; n=73; Eukaryota|Rep: Probable
phospholipid-transporting ATPase IH - Homo sapiens
(Human)
Length = 1134
Score = 33.1 bits (72), Expect = 5.3
Identities = 18/53 (33%), Positives = 32/53 (60%)
Frame = -3
Query: 401 PDQNSGMMDGLRQASFEHLRLQTTLQEVLNLQTKHIIEFHLFFIQYSNTTRRR 243
PD+ + +++G+++ F +LRL+ E+LN + HI F L I ++ RRR
Sbjct: 509 PDEVA-LVEGVQRLGFTYLRLKDNYMEILN-RENHIERFELLEILSFDSVRRR 559
>UniRef50_UPI0000E4A461 Cluster: PREDICTED: similar to MGC69249
protein; n=2; Strongylocentrotus purpuratus|Rep:
PREDICTED: similar to MGC69249 protein -
Strongylocentrotus purpuratus
Length = 145
Score = 32.7 bits (71), Expect = 7.1
Identities = 19/66 (28%), Positives = 34/66 (51%)
Frame = +3
Query: 258 IGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVN 437
+G++ KQ L + F RRL + K +A+++ A ++ HIRV ++V
Sbjct: 41 MGIVPTKQ-NLALCDNVSASSFCRRRLPVVMVKIKMAETVESAVKFVQHGHIRVGPELVL 99
Query: 438 IPSFIV 455
P+F+V
Sbjct: 100 DPAFLV 105
>UniRef50_Q86UK0 Cluster: ATP-binding cassette sub-family A member 12;
n=29; Fungi/Metazoa group|Rep: ATP-binding cassette
sub-family A member 12 - Homo sapiens (Human)
Length = 2595
Score = 32.7 bits (71), Expect = 7.1
Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
Frame = -1
Query: 229 LRTISWGPSPRG*GAHEQPYG----YERACI*RAILHACCGDRTLR*SSTLGQGVP---F 71
LRT W P P +H Q YG Y + I RAI+ G R + + Q +P F
Sbjct: 998 LRTKIWAPGPHNSPSHNQIYGRAFIYLQDSIERAIIELQTG-RNSQEIAVQVQAIPYPCF 1056
Query: 70 QKDDEVSRTSLKIPTVL 20
KD+ ++ S +P VL
Sbjct: 1057 MKDNFLTSVSYSLPIVL 1073
>UniRef50_UPI0000DBF3A8 Cluster: UPI0000DBF3A8 related cluster; n=2;
Rattus norvegicus|Rep: UPI0000DBF3A8 UniRef100 entry -
Rattus norvegicus
Length = 1725
Score = 32.3 bits (70), Expect = 9.3
Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
Frame = -1
Query: 229 LRTISWGPSPRG*GAHEQPYG----YERACI*RAILHACCGDRTLR*SSTLGQGVP---F 71
+RT W P P +H Q YG Y + I RAI+ G R + + Q VP F
Sbjct: 23 IRTKIWAPGPHNSPSHNQIYGRAFIYLQDSIERAIIELQTG-RNSQEVAVQVQAVPYPCF 81
Query: 70 QKDDEVSRTSLKIPTVL 20
KD+ ++ S +P VL
Sbjct: 82 MKDNFLTSVSYSLPIVL 98
>UniRef50_A2XYL0 Cluster: Putative uncharacterized protein; n=2;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. indica (Rice)
Length = 157
Score = 32.3 bits (70), Expect = 9.3
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +3
Query: 330 RRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 455
RRL T + K A+ + A I+Q H+RV + V P+F+V
Sbjct: 82 RRLATVMVKLKFAEHLKEAVTYIQQGHVRVGPETVTDPAFLV 123
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 631,471,153
Number of Sequences: 1657284
Number of extensions: 13037012
Number of successful extensions: 36475
Number of sequences better than 10.0: 88
Number of HSP's better than 10.0 without gapping: 35266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36466
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 43977329078
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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