Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30112
         (502 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5MGF5 Cluster: Putative uncharacterized protein; n=2; ...    48   2e-04
UniRef50_P28618 Cluster: Pyrrolidone-carboxylate peptidase; n=12...    32   6.3  
UniRef50_Q0BU79 Cluster: Hypothetical cytosolic protein; n=1; Gr...    32   8.3  

>UniRef50_Q5MGF5 Cluster: Putative uncharacterized protein; n=2;
           Bombycoidea|Rep: Putative uncharacterized protein -
           Lonomia obliqua (Moth)
          Length = 74

 Score = 47.6 bits (108), Expect = 2e-04
 Identities = 22/41 (53%), Positives = 27/41 (65%)
 Frame = +2

Query: 245 FQLTGIXXXXXXXXXXXYYGNLVAGSIVSQLTAAAMVAPTP 367
           F   GI           YYGN+VAGS++SQLT+AAM+APTP
Sbjct: 34  FGSAGIAAGSTAAAAQAYYGNVVAGSVISQLTSAAMLAPTP 74



 Score = 42.7 bits (96), Expect = 0.004
 Identities = 18/20 (90%), Positives = 19/20 (95%)
 Frame = +3

Query: 195 IYGTGGLLTPLVAPMLGFSS 254
           IYGTGGLLTP+VAPMLGF S
Sbjct: 17  IYGTGGLLTPIVAPMLGFGS 36


>UniRef50_P28618 Cluster: Pyrrolidone-carboxylate peptidase; n=12;
           Bacilli|Rep: Pyrrolidone-carboxylate peptidase -
           Bacillus subtilis
          Length = 215

 Score = 32.3 bits (70), Expect = 6.3
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +2

Query: 110 LRIARREQKLKEHGASSCISGKRGRRCCNIWHWGSVDSIS 229
           L + R   K+KEHG  + +S   G   CN   +G +D IS
Sbjct: 117 LPVKRMTAKMKEHGIPAAVSYTAGTFVCNYLFYGLMDHIS 156


>UniRef50_Q0BU79 Cluster: Hypothetical cytosolic protein; n=1;
           Granulibacter bethesdensis CGDNIH1|Rep: Hypothetical
           cytosolic protein - Granulobacter bethesdensis (strain
           ATCC BAA-1260 / CGDNIH1)
          Length = 90

 Score = 31.9 bits (69), Expect = 8.3
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +2

Query: 131 QKLKEHGA--SSCISGKRGRRCCNIWHWGSVDSISGSHAR 244
           Q L+EHG    S ++G+R  RC N WH G  D +     R
Sbjct: 42  QALREHGTFQGSMLAGRRILRC-NPWHQGGYDPVPAGRCR 80


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 454,074,456
Number of Sequences: 1657284
Number of extensions: 8187840
Number of successful extensions: 18403
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 17970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18397
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 29691847201
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)