Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30110X
(610 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q08PG2 Cluster: Putative uncharacterized protein; n=2; ... 37 0.43
UniRef50_A5NZM5 Cluster: 200 kDa antigen p200, putative; n=1; Me... 35 1.7
UniRef50_Q9Y2S7 Cluster: Polymerase delta-interacting protein 2;... 34 2.3
UniRef50_UPI0000DA2348 Cluster: PREDICTED: similar to alpha 3 ty... 33 4.0
UniRef50_Q3VXZ5 Cluster: UvrD/REP helicase; n=1; Frankia sp. EAN... 33 4.0
UniRef50_Q1N302 Cluster: Flagellar hook protein FlgE; n=2; Gamma... 33 4.0
UniRef50_Q8H8V3 Cluster: Putative uncharacterized protein; n=1; ... 33 5.3
UniRef50_Q4SDS9 Cluster: Chromosome 1 SCAF14632, whole genome sh... 33 7.0
UniRef50_Q82KY9 Cluster: Putative protoporphyrinogen oxidase; n=... 32 9.3
>UniRef50_Q08PG2 Cluster: Putative uncharacterized protein; n=2;
Proteobacteria|Rep: Putative uncharacterized protein -
Stigmatella aurantiaca DW4/3-1
Length = 468
Score = 36.7 bits (81), Expect = 0.43
Identities = 19/48 (39%), Positives = 22/48 (45%)
Frame = +3
Query: 15 RAAGVRRRWCVWARGCACRAWPPTRGPCAATPPGRSAXSWTTALRTSR 158
R RRRW W C WP R P A+PP SW + LRT +
Sbjct: 30 RTCRFRRRWSFWPPSCRSTPWP--RTPRRASPP-----SWRSGLRTGK 70
>UniRef50_A5NZM5 Cluster: 200 kDa antigen p200, putative; n=1;
Methylobacterium sp. 4-46|Rep: 200 kDa antigen p200,
putative - Methylobacterium sp. 4-46
Length = 591
Score = 34.7 bits (76), Expect = 1.7
Identities = 16/23 (69%), Positives = 16/23 (69%)
Frame = +3
Query: 54 RGCACRAWPPTRGPCAATPPGRS 122
RG ACR PP RG AA PPGRS
Sbjct: 554 RGRACRPSPPPRGRGAAGPPGRS 576
>UniRef50_Q9Y2S7 Cluster: Polymerase delta-interacting protein 2;
n=30; Euteleostomi|Rep: Polymerase delta-interacting
protein 2 - Homo sapiens (Human)
Length = 368
Score = 34.3 bits (75), Expect = 2.3
Identities = 20/49 (40%), Positives = 23/49 (46%)
Frame = +3
Query: 3 CTQRRAAGVRRRWCVWARGCACRAWPPTRGPCAATPPGRSAXSWTTALR 149
CT RRA V RW W+R WP R CAA G + + TT R
Sbjct: 4 CTARRALAVGSRW--WSRSLTGARWP--RPLCAAAGAGAFSPASTTTTR 48
>UniRef50_UPI0000DA2348 Cluster: PREDICTED: similar to alpha 3 type
IX collagen; n=1; Rattus norvegicus|Rep: PREDICTED:
similar to alpha 3 type IX collagen - Rattus norvegicus
Length = 681
Score = 33.5 bits (73), Expect = 4.0
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Frame = +3
Query: 3 CTQRRAAGVRRRWCVWARGCACRAWPP--TRGPCAATPPGRSAXSWTTAL 146
CT A R W W+ +WPP +R P PP RS SW T +
Sbjct: 538 CTPEEALSTRLHWQAWS------SWPPRPSRPPRLHWPPWRSGSSWHTVV 581
>UniRef50_Q3VXZ5 Cluster: UvrD/REP helicase; n=1; Frankia sp.
EAN1pec|Rep: UvrD/REP helicase - Frankia sp. EAN1pec
Length = 1144
Score = 33.5 bits (73), Expect = 4.0
Identities = 15/33 (45%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Frame = +3
Query: 48 WARGCACRA-WPPTRGPCAATPPGRSAXSWTTA 143
W RGC WPP G T P R+A SW A
Sbjct: 42 WPRGCGDPGRWPPEPGQPGPTRPARAACSWDPA 74
>UniRef50_Q1N302 Cluster: Flagellar hook protein FlgE; n=2;
Gammaproteobacteria|Rep: Flagellar hook protein FlgE -
Oceanobacter sp. RED65
Length = 1240
Score = 33.5 bits (73), Expect = 4.0
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = +2
Query: 146 TDQQIERLGHVVCSAGWEPETLIDVSDAASGATRPAPAQPCGAPRSGT 289
T+ Q E LG V ++ PE LI + D A G + + G+PR+GT
Sbjct: 1143 TNGQAEVLGQVALASFKNPEGLIPLGDTAWGESFESGTPTVGSPRTGT 1190
>UniRef50_Q8H8V3 Cluster: Putative uncharacterized protein; n=1;
Oryza sativa (japonica cultivar-group)|Rep: Putative
uncharacterized protein - Oryza sativa subsp. japonica
(Rice)
Length = 195
Score = 33.1 bits (72), Expect = 5.3
Identities = 21/47 (44%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = +3
Query: 9 QRRAAGVRRRWCVWAR--GCACRAWPPTRGPCAATPPGRSAXSWTTA 143
+R +A RRR C AR GC+ RAW C T PG SW TA
Sbjct: 2 RRSSAERRRRRCGGARLRGCSARAW-----SCGGTDPGEGT-SWVTA 42
>UniRef50_Q4SDS9 Cluster: Chromosome 1 SCAF14632, whole genome
shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
Chromosome 1 SCAF14632, whole genome shotgun sequence -
Tetraodon nigroviridis (Green puffer)
Length = 255
Score = 32.7 bits (71), Expect = 7.0
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = +3
Query: 3 CTQRRAAGVRRRWCVWAR--GCACRAWPPTRGPCAATPPGRSAXSWTTA 143
C R R+R C R G RA PT GP + PGR+A +W A
Sbjct: 195 CLWMRVCSGRQRGCRKERTKGPKGRAGSPTPGPALSCGPGRAAHTWLLA 243
>UniRef50_Q82KY9 Cluster: Putative protoporphyrinogen oxidase; n=1;
Streptomyces avermitilis|Rep: Putative
protoporphyrinogen oxidase - Streptomyces avermitilis
Length = 474
Score = 32.3 bits (70), Expect = 9.3
Identities = 24/61 (39%), Positives = 28/61 (45%), Gaps = 11/61 (18%)
Frame = +3
Query: 3 CTQRRAAGVRRR----------WCVWARGCACR-AWPPTRGPCAATPPGRSAXSWTTALR 149
C RR+ G RR W A CA R AWPP R P AA+P G +A T +
Sbjct: 364 CCARRSGGTARRRSSAGTTPASWTSRATTCARRPAWPPRRSP-AASPAGPTACRSTPSAT 422
Query: 150 T 152
T
Sbjct: 423 T 423
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 391,291,998
Number of Sequences: 1657284
Number of extensions: 6129876
Number of successful extensions: 23974
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 22830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23957
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 43562448615
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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