Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30093
(743 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P62263 Cluster: 40S ribosomal protein S14; n=231; cellu... 148 2e-34
UniRef50_Q4Q6S9 Cluster: 40S ribosomal protein S14; n=1; Leishma... 124 2e-27
UniRef50_Q58NR0 Cluster: Ribosomal protein S14; n=6; Eukaryota|R... 107 3e-22
UniRef50_Q01E13 Cluster: 40S ribosomal protein S14; n=1; Ostreoc... 92 2e-17
UniRef50_A0RWI9 Cluster: 30S ribosomal protein S11P; n=2; Thermo... 79 2e-13
UniRef50_P54021 Cluster: 30S ribosomal protein S11P; n=15; Archa... 77 6e-13
UniRef50_Q3LWB9 Cluster: Ribosomal protein S14; n=1; Bigelowiell... 75 2e-12
UniRef50_A0SNY7 Cluster: 30S ribosomal protein S11; n=1; uncultu... 75 2e-12
UniRef50_A7QYG3 Cluster: Chromosome chr17 scaffold_246, whole ge... 56 7e-07
UniRef50_A5BMD1 Cluster: Putative uncharacterized protein; n=1; ... 53 6e-06
UniRef50_A3A282 Cluster: Putative uncharacterized protein; n=3; ... 50 6e-05
UniRef50_A4D1M5 Cluster: Similar to ribosomal protein S14; n=3; ... 50 8e-05
UniRef50_Q5LW33 Cluster: 30S ribosomal protein S11; n=15; Bacter... 47 4e-04
UniRef50_P59378 Cluster: 30S ribosomal protein S11; n=48; Bacter... 46 7e-04
UniRef50_UPI0000DBF82A Cluster: UPI0000DBF82A related cluster; n... 46 0.001
UniRef50_UPI000155BF41 Cluster: PREDICTED: hypothetical protein,... 46 0.001
UniRef50_A6YE90 Cluster: Ribosomal protein S11; n=5; cellular or... 45 0.002
UniRef50_P59375 Cluster: 30S ribosomal protein S11; n=85; cellul... 44 0.003
UniRef50_Q4S3K0 Cluster: Chromosome 1 SCAF14749, whole genome sh... 43 0.009
UniRef50_Q12G79 Cluster: 30S ribosomal protein S11; n=186; cellu... 43 0.009
UniRef50_A6PT07 Cluster: Ribosomal protein S11; n=1; Victivallis... 42 0.012
UniRef50_A0NHE9 Cluster: Ribosomal protein S11; n=1; Oenococcus ... 42 0.021
UniRef50_Q1IS96 Cluster: 30S ribosomal protein S11; n=274; cellu... 42 0.021
UniRef50_Q08945 Cluster: FACT complex subunit SSRP1; n=47; Eumet... 41 0.037
UniRef50_P04969 Cluster: 30S ribosomal protein S11; n=155; cellu... 40 0.049
UniRef50_Q98Q07 Cluster: 30S ribosomal protein S11; n=33; Bacter... 40 0.065
UniRef50_Q4S8D4 Cluster: Chromosome undetermined SCAF14706, whol... 38 0.20
UniRef50_Q06943 Cluster: High mobility group protein Z; n=4; Dip... 38 0.20
UniRef50_Q6C1J9 Cluster: Yarrowia lipolytica chromosome F of str... 38 0.26
UniRef50_UPI00015B6175 Cluster: PREDICTED: similar to structure-... 38 0.34
UniRef50_Q6ASY6 Cluster: Small subunit ribosomal protein, putati... 38 0.34
UniRef50_Q4H2R2 Cluster: FACT complex subunit SSRP1; n=6; Deuter... 38 0.34
UniRef50_P56802 Cluster: Chloroplast 30S ribosomal protein S11; ... 37 0.60
UniRef50_Q2GEB7 Cluster: 30S ribosomal protein S11; n=1; Neorick... 36 0.80
UniRef50_Q4PGF5 Cluster: Putative uncharacterized protein; n=1; ... 36 1.1
UniRef50_Q7YDI4 Cluster: Small subunit ribosomal protein; n=29; ... 36 1.4
UniRef50_O59305 Cluster: Putative uncharacterized protein PH1639... 36 1.4
UniRef50_P30059 Cluster: Plastid 30S ribosomal protein S11; n=4;... 36 1.4
UniRef50_UPI0000E461C4 Cluster: PREDICTED: similar to HMG box (b... 34 4.2
UniRef50_UPI0001552E13 Cluster: PREDICTED: hypothetical protein;... 33 5.6
UniRef50_Q98ED3 Cluster: Mll4298 protein; n=1; Mesorhizobium lot... 33 7.4
UniRef50_Q7VCT6 Cluster: Predicted protein; n=1; Prochlorococcus... 33 7.4
UniRef50_Q9C6S3 Cluster: 30S ribosomal protein S11, putative; n=... 33 7.4
UniRef50_Q0P3I7 Cluster: Rps11; n=1; Ostreococcus tauri|Rep: Rps... 33 7.4
UniRef50_Q8T957 Cluster: AT28425p; n=3; Drosophila melanogaster|... 33 9.8
UniRef50_Q625A3 Cluster: Putative uncharacterized protein CBG013... 33 9.8
UniRef50_Q5DCD6 Cluster: SJCHGC07008 protein; n=1; Schistosoma j... 33 9.8
UniRef50_A3RJI4 Cluster: High mobility group protein 1; n=6; Euk... 33 9.8
UniRef50_P46746 Cluster: Mitochondrial ribosomal protein S11; n=... 33 9.8
>UniRef50_P62263 Cluster: 40S ribosomal protein S14; n=231; cellular
organisms|Rep: 40S ribosomal protein S14 - Homo sapiens
(Human)
Length = 151
Score = 148 bits (358), Expect = 2e-34
Identities = 70/90 (77%), Positives = 77/90 (85%)
Frame = -2
Query: 526 PEKKQSAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKV 347
P K + KEE ++LGPQ GE VFGV HIFASFNDTFVHVTDLSG+ETI RVTGGMKV
Sbjct: 3 PRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGMKV 62
Query: 346 KADRDEASPYAAMLAAQDVAEKCKTLGITA 257
KADRDE+SPYAAMLAAQDVA++CK LGITA
Sbjct: 63 KADRDESSPYAAMLAAQDVAQRCKELGITA 92
Score = 46.8 bits (106), Expect = 6e-04
Identities = 26/48 (54%), Positives = 27/48 (56%)
Frame = -1
Query: 257 LHIKLRAXXXXXXXXXXXGAQXXXXXXXXXSMKIGRIEDVTPVPSDST 114
LHIKLRA GAQ MKIGRIEDVTP+PSDST
Sbjct: 93 LHIKLRATGGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDST 140
>UniRef50_Q4Q6S9 Cluster: 40S ribosomal protein S14; n=1; Leishmania
major|Rep: 40S ribosomal protein S14 - Leishmania major
Length = 203
Score = 124 bits (300), Expect = 2e-27
Identities = 59/87 (67%), Positives = 69/87 (79%)
Frame = -2
Query: 517 KQSAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKAD 338
+ S K+EV+ GP G+ V+GV HIFASFNDTFVHVTD+SGRET +VTGGMKVKAD
Sbjct: 9 RMSKKQEVKA-YGPNVKKGDLVYGVVHIFASFNDTFVHVTDMSGRETYVKVTGGMKVKAD 67
Query: 337 RDEASPYAAMLAAQDVAEKCKTLGITA 257
RDE+SPYAAM+AAQDV +CK GI A
Sbjct: 68 RDESSPYAAMMAAQDVVARCKECGINA 94
Score = 34.7 bits (76), Expect = 2.4
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = -3
Query: 162 EDWPH*RCHPRTIRLDP*EGWP 97
EDWPH CHP RL P +G+P
Sbjct: 127 EDWPHRGCHPDPDRLHPPQGFP 148
>UniRef50_Q58NR0 Cluster: Ribosomal protein S14; n=6; Eukaryota|Rep:
Ribosomal protein S14 - Palaemonetes pugio
Length = 77
Score = 107 bits (257), Expect = 3e-22
Identities = 51/68 (75%), Positives = 56/68 (82%)
Frame = -2
Query: 526 PEKKQSAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKV 347
P K ++ KEEVQV LGPQ GE VF V HI+AS+NDTFVHVTDLSGRETI RVTGG KV
Sbjct: 3 PRKGKTPKEEVQVQLGPQVREGENVFAVCHIYASYNDTFVHVTDLSGRETIIRVTGGQKV 62
Query: 346 KADRDEAS 323
KADRDE+S
Sbjct: 63 KADRDESS 70
>UniRef50_Q01E13 Cluster: 40S ribosomal protein S14; n=1;
Ostreococcus tauri|Rep: 40S ribosomal protein S14 -
Ostreococcus tauri
Length = 243
Score = 91.9 bits (218), Expect = 2e-17
Identities = 42/50 (84%), Positives = 47/50 (94%)
Frame = -2
Query: 406 HVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITA 257
HVTDLSG+ET++R TGGMKVKADRDE+SPYAAMLAAQDVA +CK LGITA
Sbjct: 90 HVTDLSGKETLSRCTGGMKVKADRDESSPYAAMLAAQDVAARCKELGITA 139
Score = 47.6 bits (108), Expect = 3e-04
Identities = 22/35 (62%), Positives = 25/35 (71%)
Frame = -2
Query: 511 SAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFV 407
S + + +GPQ GE VFGVAHIFASFNDTFV
Sbjct: 10 SVRRVMATYVGPQAREGELVFGVAHIFASFNDTFV 44
Score = 40.3 bits (90), Expect = 0.049
Identities = 22/48 (45%), Positives = 25/48 (52%)
Frame = -1
Query: 257 LHIKLRAXXXXXXXXXXXGAQXXXXXXXXXSMKIGRIEDVTPVPSDST 114
LHIK+RA G Q +KIGRIEDVTP P+DST
Sbjct: 140 LHIKMRAKGGNKTKSPGPGGQSALRALSRSGIKIGRIEDVTPTPTDST 187
>UniRef50_A0RWI9 Cluster: 30S ribosomal protein S11P; n=2;
Thermoprotei|Rep: 30S ribosomal protein S11P -
Cenarchaeum symbiosum
Length = 198
Score = 78.6 bits (185), Expect = 2e-13
Identities = 34/75 (45%), Positives = 51/75 (68%)
Frame = -2
Query: 478 PQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAA 299
P+ + G+AHI++S+N+T +H+TDL+G ET++ +GG+ V ADR E+SP+AAM AA
Sbjct: 66 PETTPADEKLGIAHIYSSYNNTIIHMTDLTGAETVSISSGGVHVNADRYESSPFAAMKAA 125
Query: 298 QDVAEKCKTLGITAF 254
V E + G T F
Sbjct: 126 NKVIESARAKGFTGF 140
Score = 37.5 bits (83), Expect = 0.34
Identities = 19/49 (38%), Positives = 25/49 (51%)
Frame = -1
Query: 260 GLHIKLRAXXXXXXXXXXXGAQXXXXXXXXXSMKIGRIEDVTPVPSDST 114
G HI++RA GAQ +IGRI+DVTP+P D+T
Sbjct: 139 GFHIRVRAVGGVGSRVPGPGAQAAIRALARGGFRIGRIDDVTPIPHDTT 187
>UniRef50_P54021 Cluster: 30S ribosomal protein S11P; n=15;
Archaea|Rep: 30S ribosomal protein S11P - Methanococcus
jannaschii
Length = 129
Score = 76.6 bits (180), Expect = 6e-13
Identities = 34/63 (53%), Positives = 46/63 (73%)
Frame = -2
Query: 451 FGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKT 272
+G+ HI++S+N+T +H TD++G ETIARV+GG + RDE SPYAAM AA +AE K
Sbjct: 9 WGIVHIYSSYNNTIIHATDITGAETIARVSGGRVTRNQRDEGSPYAAMQAAFKLAEVLKE 68
Query: 271 LGI 263
GI
Sbjct: 69 RGI 71
Score = 39.1 bits (87), Expect = 0.11
Identities = 21/48 (43%), Positives = 25/48 (52%)
Frame = -1
Query: 257 LHIKLRAXXXXXXXXXXXGAQXXXXXXXXXSMKIGRIEDVTPVPSDST 114
+HIK+RA GAQ ++IGRIEDVTPVP D T
Sbjct: 74 IHIKVRAPGGSGQKNPGPGAQAAIRALARAGLRIGRIEDVTPVPHDGT 121
>UniRef50_Q3LWB9 Cluster: Ribosomal protein S14; n=1; Bigelowiella
natans|Rep: Ribosomal protein S14 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 145
Score = 74.5 bits (175), Expect = 2e-12
Identities = 32/66 (48%), Positives = 46/66 (69%)
Frame = -2
Query: 454 VFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCK 275
+FG+ HI ++ NDT +HVTD++G ETI+R++ G+ +D+ S Y AMLA Q V+ CK
Sbjct: 11 LFGILHILSTKNDTIIHVTDITGSETISRISSGIVATNGKDKKSNYCAMLATQKVSNVCK 70
Query: 274 TLGITA 257
LGI A
Sbjct: 71 VLGINA 76
Score = 36.7 bits (81), Expect = 0.60
Identities = 20/50 (40%), Positives = 23/50 (46%)
Frame = -1
Query: 263 NGLHIKLRAXXXXXXXXXXXGAQXXXXXXXXXSMKIGRIEDVTPVPSDST 114
N LHIK+RA GA KIGRIED TP P++ T
Sbjct: 75 NALHIKIRARGGNASHLISTGAHTVVTTLVRLGFKIGRIEDTTPTPTNGT 124
>UniRef50_A0SNY7 Cluster: 30S ribosomal protein S11; n=1; uncultured
euryarchaeote ARMAN-2|Rep: 30S ribosomal protein S11 -
uncultured euryarchaeote ARMAN-2
Length = 169
Score = 74.5 bits (175), Expect = 2e-12
Identities = 37/64 (57%), Positives = 45/64 (70%)
Frame = -2
Query: 451 FGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKT 272
+ VAH+++S NDT + +TDLSG ETIA +GGM V AD E SPYAAM AA VA + K
Sbjct: 46 WAVAHVYSSKNDTIITLTDLSGSETIAVGSGGMMVNADSQEGSPYAAMQAAYKVAAEAKE 105
Query: 271 LGIT 260
GIT
Sbjct: 106 KGIT 109
Score = 33.1 bits (72), Expect = 7.4
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = -1
Query: 257 LHIKLRAXXXXXXXXXXXGAQXXXXXXXXXSMKIGRIEDVTPVPSDST 114
++I++RA GAQ +++ RIEDVTP+P+D+T
Sbjct: 111 INIEIRAPGGHGSKTPGHGAQAVVRVLARSGLRVNRIEDVTPIPTDTT 158
>UniRef50_A7QYG3 Cluster: Chromosome chr17 scaffold_246, whole
genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr17 scaffold_246, whole genome shotgun
sequence - Vitis vinifera (Grape)
Length = 182
Score = 56.4 bits (130), Expect = 7e-07
Identities = 26/41 (63%), Positives = 32/41 (78%)
Frame = -2
Query: 382 ETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGIT 260
ET+ R TGGMK K D +E+SP AAM AAQDV+++CK L IT
Sbjct: 50 ETLVRTTGGMKEKTDGEESSPCAAMPAAQDVSQECKELDIT 90
>UniRef50_A5BMD1 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 104
Score = 53.2 bits (122), Expect = 6e-06
Identities = 26/41 (63%), Positives = 32/41 (78%)
Frame = -2
Query: 382 ETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGIT 260
ET+ R TGGMK KAD +E+SP AAM AAQDV+++ K L IT
Sbjct: 29 ETLVRSTGGMKEKADGEESSPCAAMPAAQDVSQRFKELDIT 69
>UniRef50_A3A282 Cluster: Putative uncharacterized protein; n=3;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. japonica (Rice)
Length = 332
Score = 50.0 bits (114), Expect = 6e-05
Identities = 23/31 (74%), Positives = 26/31 (83%)
Frame = -2
Query: 367 VTGGMKVKADRDEASPYAAMLAAQDVAEKCK 275
V GGMK+KAD DE+SPYAAML +QDVA CK
Sbjct: 211 VGGGMKIKADCDESSPYAAMLVSQDVALCCK 241
>UniRef50_A4D1M5 Cluster: Similar to ribosomal protein S14; n=3;
Homo/Pan/Gorilla group|Rep: Similar to ribosomal protein
S14 - Homo sapiens (Human)
Length = 350
Score = 49.6 bits (113), Expect = 8e-05
Identities = 22/33 (66%), Positives = 27/33 (81%)
Frame = -2
Query: 355 MKVKADRDEASPYAAMLAAQDVAEKCKTLGITA 257
MK +AD+DE+SP AML AQDV ++CK LGITA
Sbjct: 1 MKEQADQDESSPCTAMLTAQDVVQRCKELGITA 33
>UniRef50_Q5LW33 Cluster: 30S ribosomal protein S11; n=15;
Bacteria|Rep: 30S ribosomal protein S11 - Silicibacter
pomeroyi
Length = 130
Score = 47.2 bits (107), Expect = 4e-04
Identities = 23/62 (37%), Positives = 37/62 (59%)
Frame = -2
Query: 448 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 269
GVAH+ ++FN+T + ++D+ G G M K R +++PYAA LAA+D K +
Sbjct: 20 GVAHVNSTFNNTKILISDVQGNAISWSSAGTMGFKGSR-KSTPYAAQLAAEDAGRKAQDH 78
Query: 268 GI 263
G+
Sbjct: 79 GV 80
>UniRef50_P59378 Cluster: 30S ribosomal protein S11; n=48;
Bacteria|Rep: 30S ribosomal protein S11 - Streptococcus
mutans
Length = 127
Score = 46.4 bits (105), Expect = 7e-04
Identities = 22/62 (35%), Positives = 37/62 (59%)
Frame = -2
Query: 448 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 269
G+AHI A+FN+T V +TD+ G G + K R +++P+AA +AA+ A+ +
Sbjct: 17 GIAHIHATFNNTIVMITDVHGNALAWSSAGALGFKGSR-KSTPFAAQMAAEAAAKSAQEH 75
Query: 268 GI 263
G+
Sbjct: 76 GL 77
>UniRef50_UPI0000DBF82A Cluster: UPI0000DBF82A related cluster; n=1;
Rattus norvegicus|Rep: UPI0000DBF82A UniRef100 entry -
Rattus norvegicus
Length = 119
Score = 46.0 bits (104), Expect = 0.001
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Frame = -2
Query: 490 VTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGR-ETIARVTGGMKVKADRDEASPYA 314
++L PQ + G+ V GV +IFASF D+F++ TD+ G+ T VT MK + E +P
Sbjct: 5 LSLRPQVVEGQNVLGVCYIFASFGDSFIYGTDVYGKVNTCQYVTSRMKTQ--YAETNPCH 62
Query: 313 AMLA-AQDVAEKCKTLGITA 257
+ A DV + K + + A
Sbjct: 63 RLHAGCLDVTHRFKEMSVPA 82
>UniRef50_UPI000155BF41 Cluster: PREDICTED: hypothetical protein,
partial; n=1; Ornithorhynchus anatinus|Rep: PREDICTED:
hypothetical protein, partial - Ornithorhynchus anatinus
Length = 344
Score = 45.6 bits (103), Expect = 0.001
Identities = 21/45 (46%), Positives = 30/45 (66%)
Frame = +2
Query: 569 VYSLVVYQFKNYFKIFAIRKKVKMTDKPKRPMSAYMLWLNSARNR 703
V L + K+ ++F + KK K + PKRPMSAYMLWLN++R +
Sbjct: 118 VLRLFLLPHKDQRQMFFVGKKGKDPNAPKRPMSAYMLWLNASREK 162
>UniRef50_A6YE90 Cluster: Ribosomal protein S11; n=5; cellular
organisms|Rep: Ribosomal protein S11 - Chlorokybus
atmophyticus (Soil alga)
Length = 262
Score = 44.8 bits (101), Expect = 0.002
Identities = 26/66 (39%), Positives = 35/66 (53%)
Frame = -2
Query: 448 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 269
GVAHI + N+T + +TDL G +G + K R + S YAA AA+ A+K L
Sbjct: 152 GVAHIQTTLNNTIITITDLDGNTKSWSSSGSIGFKGSRRKTS-YAAQAAAETAAKKSIQL 210
Query: 268 GITAFT 251
GI T
Sbjct: 211 GIKDVT 216
>UniRef50_P59375 Cluster: 30S ribosomal protein S11; n=85; cellular
organisms|Rep: 30S ribosomal protein S11 - Shewanella
oneidensis
Length = 130
Score = 44.4 bits (100), Expect = 0.003
Identities = 22/62 (35%), Positives = 35/62 (56%)
Frame = -2
Query: 448 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 269
G+AHI ASFN+T V +TD G +GG + R +++P+AA +AA+ +
Sbjct: 20 GMAHIHASFNNTIVTITDRQGNALSWATSGGSGFRGSR-KSTPFAAQVAAERAGAAAQDY 78
Query: 268 GI 263
G+
Sbjct: 79 GL 80
>UniRef50_Q4S3K0 Cluster: Chromosome 1 SCAF14749, whole genome
shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
Chromosome 1 SCAF14749, whole genome shotgun sequence -
Tetraodon nigroviridis (Green puffer)
Length = 669
Score = 42.7 bits (96), Expect = 0.009
Identities = 19/26 (73%), Positives = 20/26 (76%)
Frame = +2
Query: 626 KKVKMTDKPKRPMSAYMLWLNSARNR 703
KK K PKRPMSAYMLWLNS+R R
Sbjct: 581 KKQKDAGGPKRPMSAYMLWLNSSRER 606
>UniRef50_Q12G79 Cluster: 30S ribosomal protein S11; n=186; cellular
organisms|Rep: 30S ribosomal protein S11 - Polaromonas
sp. (strain JS666 / ATCC BAA-500)
Length = 134
Score = 42.7 bits (96), Expect = 0.009
Identities = 19/51 (37%), Positives = 32/51 (62%)
Frame = -2
Query: 448 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQ 296
G+AH+ ASFN+T + +TD G +GG K R +++P+AA +A++
Sbjct: 24 GIAHVHASFNNTIITITDRQGNALSWASSGGQGFKGSR-KSTPFAAQVASE 73
>UniRef50_A6PT07 Cluster: Ribosomal protein S11; n=1; Victivallis
vadensis ATCC BAA-548|Rep: Ribosomal protein S11 -
Victivallis vadensis ATCC BAA-548
Length = 148
Score = 42.3 bits (95), Expect = 0.012
Identities = 23/62 (37%), Positives = 36/62 (58%)
Frame = -2
Query: 448 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 269
G+A++ A+FN+T V TDL G I TGG +++ YAA + A D A+K + +
Sbjct: 38 GIAYVLATFNNTKVTFTDLHG-NVICWSTGGKNGFKGSRKSTAYAAQVIAGDAAKKAQLV 96
Query: 268 GI 263
G+
Sbjct: 97 GM 98
>UniRef50_A0NHE9 Cluster: Ribosomal protein S11; n=1; Oenococcus
oeni ATCC BAA-1163|Rep: Ribosomal protein S11 -
Oenococcus oeni ATCC BAA-1163
Length = 113
Score = 41.5 bits (93), Expect = 0.021
Identities = 21/55 (38%), Positives = 33/55 (60%)
Frame = -2
Query: 448 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAE 284
GVAHI ++FN+T V +TD +G G + K R +++P+AA LA + A+
Sbjct: 22 GVAHIHSTFNNTIVLITDEAGNAVSWSSAGSLGFKGSR-KSTPFAAQLAGEAAAK 75
>UniRef50_Q1IS96 Cluster: 30S ribosomal protein S11; n=274; cellular
organisms|Rep: 30S ribosomal protein S11 - Acidobacteria
bacterium (strain Ellin345)
Length = 142
Score = 41.5 bits (93), Expect = 0.021
Identities = 22/62 (35%), Positives = 35/62 (56%)
Frame = -2
Query: 448 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 269
G+AHI ASFN+T V ++D SG + +G + + R + +P+AA AA A +
Sbjct: 32 GLAHIQASFNNTIVTISDPSGNVVSWKSSGSLGFRGSR-KGTPFAAQQAAMTAANMARDH 90
Query: 268 GI 263
G+
Sbjct: 91 GM 92
>UniRef50_Q08945 Cluster: FACT complex subunit SSRP1; n=47;
Eumetazoa|Rep: FACT complex subunit SSRP1 - Homo sapiens
(Human)
Length = 709
Score = 40.7 bits (91), Expect = 0.037
Identities = 17/26 (65%), Positives = 21/26 (80%)
Frame = +2
Query: 626 KKVKMTDKPKRPMSAYMLWLNSARNR 703
KK K + PKRPMSAYMLWLN++R +
Sbjct: 539 KKGKDPNAPKRPMSAYMLWLNASREK 564
>UniRef50_P04969 Cluster: 30S ribosomal protein S11; n=155; cellular
organisms|Rep: 30S ribosomal protein S11 - Bacillus
subtilis
Length = 131
Score = 40.3 bits (90), Expect = 0.049
Identities = 19/55 (34%), Positives = 33/55 (60%)
Frame = -2
Query: 448 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAE 284
G+AHI ++FN+T V +TD G G + + R +++P+AA +AA+ A+
Sbjct: 21 GIAHIRSTFNNTIVTITDTHGNAISWSSAGALGFRGSR-KSTPFAAQMAAETAAK 74
>UniRef50_Q98Q07 Cluster: 30S ribosomal protein S11; n=33;
Bacteria|Rep: 30S ribosomal protein S11 - Mycoplasma
pulmonis
Length = 136
Score = 39.9 bits (89), Expect = 0.065
Identities = 24/62 (38%), Positives = 35/62 (56%)
Frame = -2
Query: 448 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 269
GVAHI ++ N+T V +D G +G + K + + + YAA LAAQ+ +EK K
Sbjct: 21 GVAHIHSTHNNTIVTFSDEKGNVISWASSGTIGYKGTKKKTA-YAAGLAAQNASEKAKEH 79
Query: 268 GI 263
GI
Sbjct: 80 GI 81
>UniRef50_Q4S8D4 Cluster: Chromosome undetermined SCAF14706, whole
genome shotgun sequence; n=3; cellular organisms|Rep:
Chromosome undetermined SCAF14706, whole genome shotgun
sequence - Tetraodon nigroviridis (Green puffer)
Length = 215
Score = 38.3 bits (85), Expect = 0.20
Identities = 19/62 (30%), Positives = 36/62 (58%)
Frame = -2
Query: 445 VAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLG 266
+AH+ A++N+T + VTD +G+ ++ R + G + + +++P AA A A K G
Sbjct: 106 IAHVKATYNNTHIQVTDSAGK-SMVRTSCGTEGFKNIKKSTPIAAQTAGISAAAKATAKG 164
Query: 265 IT 260
+T
Sbjct: 165 VT 166
>UniRef50_Q06943 Cluster: High mobility group protein Z; n=4;
Diptera|Rep: High mobility group protein Z - Drosophila
melanogaster (Fruit fly)
Length = 111
Score = 38.3 bits (85), Expect = 0.20
Identities = 14/20 (70%), Positives = 17/20 (85%)
Frame = +2
Query: 644 DKPKRPMSAYMLWLNSARNR 703
D+PKRP+SAYMLWLN R +
Sbjct: 4 DRPKRPLSAYMLWLNETREQ 23
>UniRef50_Q6C1J9 Cluster: Yarrowia lipolytica chromosome F of strain
CLIB122 of Yarrowia lipolytica; n=1; Yarrowia
lipolytica|Rep: Yarrowia lipolytica chromosome F of
strain CLIB122 of Yarrowia lipolytica - Yarrowia
lipolytica (Candida lipolytica)
Length = 1051
Score = 37.9 bits (84), Expect = 0.26
Identities = 22/72 (30%), Positives = 34/72 (47%)
Frame = +3
Query: 360 PVTRAIVSRPDKSVT*TNVSLNEAKMCATPNTVSPTKCWGPRVTWTSSLALCFFSGPWLS 539
P T + P+K T + + CAT + ++ T GP +T T + C S P S
Sbjct: 565 PSTTETTTTPEKQTTPPSSTPQTTDPCATTSVITSTPPVGPPITTTVTTNTCSSSVPETS 624
Query: 540 L*LESCTFSTST 575
+ + S TF+T T
Sbjct: 625 IPITSETFTTET 636
>UniRef50_UPI00015B6175 Cluster: PREDICTED: similar to
structure-specific recognition protein; n=1; Nasonia
vitripennis|Rep: PREDICTED: similar to
structure-specific recognition protein - Nasonia
vitripennis
Length = 735
Score = 37.5 bits (83), Expect = 0.34
Identities = 17/24 (70%), Positives = 19/24 (79%)
Frame = +2
Query: 626 KKVKMTDKPKRPMSAYMLWLNSAR 697
KK K +KPKRP SAYML+LNS R
Sbjct: 543 KKEKDENKPKRPASAYMLYLNSVR 566
>UniRef50_Q6ASY6 Cluster: Small subunit ribosomal protein, putative;
n=19; Spermatophyta|Rep: Small subunit ribosomal
protein, putative - Oryza sativa subsp. japonica (Rice)
Length = 366
Score = 37.5 bits (83), Expect = 0.34
Identities = 18/59 (30%), Positives = 28/59 (47%)
Frame = -2
Query: 439 HIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGI 263
H+ N TFV VTD+ G + G ++ + R S YAA A+ V + +G+
Sbjct: 248 HVLLKRNKTFVTVTDVRGNKKTGASAGCLEDRKGRSRLSKYAAEATAEHVGRAARKMGL 306
>UniRef50_Q4H2R2 Cluster: FACT complex subunit SSRP1; n=6;
Deuterostomia|Rep: FACT complex subunit SSRP1 - Ciona
intestinalis (Transparent sea squirt)
Length = 704
Score = 37.5 bits (83), Expect = 0.34
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = +2
Query: 620 IRKKVKMTDKPKRPMSAYMLWLNSARNR 703
+++K K + PKRP SAY LWLN R R
Sbjct: 544 VKRKKKDPNAPKRPQSAYFLWLNENRGR 571
>UniRef50_P56802 Cluster: Chloroplast 30S ribosomal protein S11;
n=85; Tracheophyta|Rep: Chloroplast 30S ribosomal
protein S11 - Arabidopsis thaliana (Mouse-ear cress)
Length = 138
Score = 36.7 bits (81), Expect = 0.60
Identities = 21/50 (42%), Positives = 27/50 (54%)
Frame = -2
Query: 448 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAA 299
GV H+ ASFN+T V VTD+ GR G + R +P+AA AA
Sbjct: 28 GVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFRGTR-RGTPFAAQTAA 76
>UniRef50_Q2GEB7 Cluster: 30S ribosomal protein S11; n=1;
Neorickettsia sennetsu str. Miyayama|Rep: 30S ribosomal
protein S11 - Neorickettsia sennetsu (strain Miyayama)
Length = 120
Score = 36.3 bits (80), Expect = 0.80
Identities = 19/64 (29%), Positives = 34/64 (53%)
Frame = -2
Query: 454 VFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCK 275
V G AH+ +FN+ ++ VTD G +G + K ++ +++ YAA A + K K
Sbjct: 8 VSGNAHVIVTFNNVYISVTDHQGNVQGWASSGSVGFKGNK-KSTAYAAQSVATTLMTKLK 66
Query: 274 TLGI 263
+G+
Sbjct: 67 RIGL 70
>UniRef50_Q4PGF5 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 967
Score = 35.9 bits (79), Expect = 1.1
Identities = 14/26 (53%), Positives = 21/26 (80%)
Frame = +2
Query: 620 IRKKVKMTDKPKRPMSAYMLWLNSAR 697
+++K T KPKRP+SAY+L++NS R
Sbjct: 360 LKRKELSTGKPKRPLSAYLLFVNSVR 385
>UniRef50_Q7YDI4 Cluster: Small subunit ribosomal protein; n=29;
Magnoliophyta|Rep: Small subunit ribosomal protein -
Berberis thunbergii (Japanese barberry)
Length = 150
Score = 35.5 bits (78), Expect = 1.4
Identities = 18/61 (29%), Positives = 27/61 (44%)
Frame = -2
Query: 445 VAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLG 266
+ H+ N+TFV VTD G + G ++ S YAA A+ V + LG
Sbjct: 46 LVHLLPLHNNTFVTVTDARGNKKTGASAGSLEEFKGGSRLSRYAAKATAEHVGRSARNLG 105
Query: 265 I 263
+
Sbjct: 106 M 106
>UniRef50_O59305 Cluster: Putative uncharacterized protein PH1639;
n=1; Pyrococcus horikoshii|Rep: Putative uncharacterized
protein PH1639 - Pyrococcus horikoshii
Length = 102
Score = 35.5 bits (78), Expect = 1.4
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = +2
Query: 281 FLCYILCR---QHSSVG*RFITVSLHLHATSDTGDSFPAG*ISNMNECVI 421
F C+ C +H +G R I VS + H T+ + F G ISN+N VI
Sbjct: 51 FQCFFCCSPSSKHCCIGGRLIPVSFNYHTTAPSAYRFRTGDISNVNNGVI 100
>UniRef50_P30059 Cluster: Plastid 30S ribosomal protein S11; n=4;
Streptophyta|Rep: Plastid 30S ribosomal protein S11 -
Epifagus virginiana (Beechdrops)
Length = 136
Score = 35.5 bits (78), Expect = 1.4
Identities = 20/50 (40%), Positives = 26/50 (52%)
Frame = -2
Query: 448 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAA 299
GV H+ SFN+T V VTD+ GR G K R + +AA +AA
Sbjct: 28 GVIHVQTSFNNTIVAVTDIKGRVVSWSSAGTCGFKGTR-RGTSFAAQIAA 76
>UniRef50_UPI0000E461C4 Cluster: PREDICTED: similar to HMG box (bp.
1499..1757); n=2; Strongylocentrotus purpuratus|Rep:
PREDICTED: similar to HMG box (bp. 1499..1757) -
Strongylocentrotus purpuratus
Length = 393
Score = 33.9 bits (74), Expect = 4.2
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +2
Query: 626 KKVKMTDKPKRPMSAYMLWLNSAR 697
K+ K ++PKRP + YMLWLN R
Sbjct: 250 KQEKDANRPKRPTTGYMLWLNDQR 273
>UniRef50_UPI0001552E13 Cluster: PREDICTED: hypothetical protein;
n=2; Fungi/Metazoa group|Rep: PREDICTED: hypothetical
protein - Mus musculus
Length = 196
Score = 33.5 bits (73), Expect = 5.6
Identities = 37/142 (26%), Positives = 58/142 (40%), Gaps = 5/142 (3%)
Frame = +3
Query: 165 T*TSKSPKCRLSTRTRGLCFVSTSSTELYVKAVMPR----VLHFSATSCAANIAA*GDAS 332
T +S S +ST T STSST + + S+++C+ + + S
Sbjct: 15 TSSSTSSITSISTSTTSSTSTSTSSTSSSICSTSTTSSTSTSSTSSSTCSTSTTSSTSTS 74
Query: 333 SRSAFTFMPPVTRAIVSRPDKSVT*TNVSLNEAKMCATPNTVSPTKCWGPRVTWTSSLAL 512
S S+ T T +I S S + T+ S + ++ +T +PT + TSS +
Sbjct: 75 STSSSTCSTSTTSSITSSTSTSTSSTSTSSTSSTSTSSTSTSTPTPSTSTSTSTTSSTST 134
Query: 513 CFFSGPWLSL*LES-CTFSTST 575
S S S T STST
Sbjct: 135 STTSSTSTSTSTSSTSTSSTST 156
>UniRef50_Q98ED3 Cluster: Mll4298 protein; n=1; Mesorhizobium
loti|Rep: Mll4298 protein - Rhizobium loti
(Mesorhizobium loti)
Length = 171
Score = 33.1 bits (72), Expect = 7.4
Identities = 34/106 (32%), Positives = 43/106 (40%), Gaps = 4/106 (3%)
Frame = +3
Query: 228 STSSTELYVKAVMPRVLHFSATSCAANIAA*GDASSRSAFTFMPPVTRAIVSRPDKSVT* 407
S S+ + V A M F+A C +A GD+ S S F P T A V+ + +
Sbjct: 10 SLSTASIAVGAAMIPANAFAA--CPIELAVYGDSQSGSEIDFTPTGTSATVTNTFRMILD 67
Query: 408 TNVSLNEAKM----CATPNTVSPTKCWGPRVTWTSSLALCFFSGPW 533
NV LN M A PN KC T + LA C PW
Sbjct: 68 NNVVLNGIVMWNEGVARPNGALMYKC-PEGDTTGAELAAC---APW 109
>UniRef50_Q7VCT6 Cluster: Predicted protein; n=1; Prochlorococcus
marinus|Rep: Predicted protein - Prochlorococcus marinus
Length = 58
Score = 33.1 bits (72), Expect = 7.4
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 192 CTSGSCSFKYEDWPH*RCHPRTIRLD 115
C++ SCSF Y+DW H R H + D
Sbjct: 4 CSNRSCSFPYDDWHHCRIHRSKVTND 29
>UniRef50_Q9C6S3 Cluster: 30S ribosomal protein S11, putative; n=2;
Arabidopsis thaliana|Rep: 30S ribosomal protein S11,
putative - Arabidopsis thaliana (Mouse-ear cress)
Length = 235
Score = 33.1 bits (72), Expect = 7.4
Identities = 18/66 (27%), Positives = 30/66 (45%)
Frame = -2
Query: 460 ETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEK 281
ET + HI N+TFV VTD G +G + + + Y A A+++ +
Sbjct: 111 ETNADIIHIKMLRNNTFVTVTDSKGNVKCKATSGSLPDLKGGRKMTNYTADATAENIGRR 170
Query: 280 CKTLGI 263
K +G+
Sbjct: 171 AKAMGL 176
>UniRef50_Q0P3I7 Cluster: Rps11; n=1; Ostreococcus tauri|Rep: Rps11
- Ostreococcus tauri
Length = 121
Score = 33.1 bits (72), Expect = 7.4
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = -2
Query: 436 IFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKC 278
I + N+TFV++TDL G +G + K + ++S YAA + V + C
Sbjct: 15 ISTTLNNTFVNLTDLEGNTLCCVSSGSLGFKGSK-KSSSYAAQSTTEKVLQFC 66
>UniRef50_Q8T957 Cluster: AT28425p; n=3; Drosophila
melanogaster|Rep: AT28425p - Drosophila melanogaster
(Fruit fly)
Length = 138
Score = 32.7 bits (71), Expect = 9.8
Identities = 11/15 (73%), Positives = 15/15 (100%)
Frame = +2
Query: 647 KPKRPMSAYMLWLNS 691
+PK+PMSA+MLW+NS
Sbjct: 7 RPKKPMSAFMLWMNS 21
>UniRef50_Q625A3 Cluster: Putative uncharacterized protein CBG01350;
n=1; Caenorhabditis briggsae|Rep: Putative
uncharacterized protein CBG01350 - Caenorhabditis
briggsae
Length = 303
Score = 32.7 bits (71), Expect = 9.8
Identities = 22/45 (48%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = -3
Query: 702 LFLALFNHSMYA--DIGRFGLSVILTFFLMAKILK*FLNWYTTKL 574
L ALF S+Y D G F +VILT + A FL WYTTKL
Sbjct: 107 LLFALFVPSLYRSMDQGDFSNAVILTALVFAAFDD-FLYWYTTKL 150
>UniRef50_Q5DCD6 Cluster: SJCHGC07008 protein; n=1; Schistosoma
japonicum|Rep: SJCHGC07008 protein - Schistosoma
japonicum (Blood fluke)
Length = 213
Score = 32.7 bits (71), Expect = 9.8
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +2
Query: 623 RKKVKMTDKPKRPMSAYMLWLNSARNR 703
+KK K + P RP+SAY LW N R +
Sbjct: 120 QKKPKDPNAPTRPLSAYFLWFNENREK 146
>UniRef50_A3RJI4 Cluster: High mobility group protein 1; n=6;
Eukaryota|Rep: High mobility group protein 1 -
Wuchereria bancrofti
Length = 101
Score = 32.7 bits (71), Expect = 9.8
Identities = 15/26 (57%), Positives = 17/26 (65%)
Frame = +2
Query: 626 KKVKMTDKPKRPMSAYMLWLNSARNR 703
KKVK + PKR SAYM WL R+R
Sbjct: 28 KKVKDPNAPKRAKSAYMFWLLENRSR 53
>UniRef50_P46746 Cluster: Mitochondrial ribosomal protein S11; n=1;
Prototheca wickerhamii|Rep: Mitochondrial ribosomal
protein S11 - Prototheca wickerhamii
Length = 128
Score = 32.7 bits (71), Expect = 9.8
Identities = 18/56 (32%), Positives = 31/56 (55%)
Frame = -2
Query: 448 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEK 281
G+ HI ++ N+T + +TDL G G + K R +++ YA+ AA+ +A K
Sbjct: 18 GIVHIQSTTNNTLITLTDLEGNTQFFVSAGTLGFKNSR-KSTVYASGAAAEALASK 72
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 726,513,238
Number of Sequences: 1657284
Number of extensions: 15137720
Number of successful extensions: 37141
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 35490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37121
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 60911752460
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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