Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30055
         (766 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A7KCY9 Cluster: Ribosomal protein L23a; n=1; Heliconius...    39   0.16 
UniRef50_Q4GXF0 Cluster: Ribosomal protein L23Ae; n=1; Dascillus...    36   0.83 
UniRef50_UPI00015B567B Cluster: PREDICTED: similar to ribosomal ...    34   4.4  
UniRef50_Q23UD6 Cluster: Putative uncharacterized protein; n=1; ...    34   4.4  
UniRef50_A6P2H5 Cluster: Putative uncharacterized protein; n=1; ...    33   7.8  

>UniRef50_A7KCY9 Cluster: Ribosomal protein L23a; n=1; Heliconius
           melpomene|Rep: Ribosomal protein L23a - Heliconius
           melpomene
          Length = 221

 Score = 38.7 bits (86), Expect = 0.16
 Identities = 16/21 (76%), Positives = 17/21 (80%)
 Frame = +2

Query: 698 KESTEIRNSVHFRRPKTFEPP 760
           K   +IR SVHFRRPKTFEPP
Sbjct: 169 KRVRKIRTSVHFRRPKTFEPP 189


>UniRef50_Q4GXF0 Cluster: Ribosomal protein L23Ae; n=1; Dascillus
           cervinus|Rep: Ribosomal protein L23Ae - Dascillus
           cervinus
          Length = 212

 Score = 36.3 bits (80), Expect = 0.83
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = +2

Query: 710 EIRNSVHFRRPKTFEPP 760
           +IRNSVHF RPKTF PP
Sbjct: 163 KIRNSVHFHRPKTFRPP 179


>UniRef50_UPI00015B567B Cluster: PREDICTED: similar to ribosomal
           protein L23Ae; n=1; Nasonia vitripennis|Rep: PREDICTED:
           similar to ribosomal protein L23Ae - Nasonia vitripennis
          Length = 247

 Score = 33.9 bits (74), Expect = 4.4
 Identities = 13/17 (76%), Positives = 14/17 (82%)
 Frame = +2

Query: 710 EIRNSVHFRRPKTFEPP 760
           +IR SVHF RPKTF PP
Sbjct: 130 KIRTSVHFHRPKTFRPP 146


>UniRef50_Q23UD6 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 921

 Score = 33.9 bits (74), Expect = 4.4
 Identities = 18/40 (45%), Positives = 23/40 (57%)
 Frame = -3

Query: 719 CEFPYSLSMFTFTTFL*ALSALVTGFTTFFCPLIPVFLGF 600
           C F + L ++T + FL   SA + G   FF PLIP FL F
Sbjct: 530 CMFLFQLVLYTKSIFLAVGSAAIVGL--FFVPLIPAFLEF 567


>UniRef50_A6P2H5 Cluster: Putative uncharacterized protein; n=1;
           Bacteroides capillosus ATCC 29799|Rep: Putative
           uncharacterized protein - Bacteroides capillosus ATCC
           29799
          Length = 512

 Score = 33.1 bits (72), Expect = 7.8
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -2

Query: 660 CFSNRFHYFFLSLNPSLFGLRCNLQFRNCWLG 565
           C  +  H++FLS  P  FG+ C  Q R CW+G
Sbjct: 383 CNGDVGHFYFLS-QPGSFGISCPGQRRACWIG 413


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 343,518,185
Number of Sequences: 1657284
Number of extensions: 3989747
Number of successful extensions: 11748
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11743
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 63792713725
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)