Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30054
         (722 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6LFH6 Cluster: Putative uncharacterized protein; n=1; ...    36   1.0  
UniRef50_P34641 Cluster: Protein ced-11; n=3; Caenorhabditis|Rep...    34   3.1  
UniRef50_A7CWP6 Cluster: CDP-diacylglycerol--glycerol-3-phosphat...    33   7.1  
UniRef50_A5IZI2 Cluster: Putative uncharacterized protein; n=1; ...    33   7.1  
UniRef50_Q01055 Cluster: Capsid assembly protein 63; n=3; Herpes...    33   7.1  
UniRef50_A0DL78 Cluster: Chromosome undetermined scaffold_55, wh...    33   9.4  

>UniRef50_Q6LFH6 Cluster: Putative uncharacterized protein; n=1;
            Plasmodium falciparum 3D7|Rep: Putative uncharacterized
            protein - Plasmodium falciparum (isolate 3D7)
          Length = 6077

 Score = 35.9 bits (79), Expect = 1.0
 Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 3/111 (2%)
 Frame = -3

Query: 375  EVLLKSNRSFFVGLNKIDHLIPIILKTYALLDNIQIIYF*P*QLHKCALNLVKSSPYHNN 196
            +++LKSN  FF  L  ++ LI +I K + +L+   IIY     +++C   L+    Y+NN
Sbjct: 4925 KLMLKSNE-FFDDL--LELLIILITKKHPILNKYTIIY-----IYECLYTLLNIYHYNNN 4976

Query: 195  EGH--YYHSLQSVHRAPYHQI*SHTTLFYNEIGTTNMNTTRSHIIN-FLNL 52
              +  Y H+  + +   Y+   ++   +YN I          H  N FL+L
Sbjct: 4977 NNNNNYNHNNHNNNNYNYYNNYNNNYGYYNSISNNEEYDNMGHTKNMFLSL 5027


>UniRef50_P34641 Cluster: Protein ced-11; n=3; Caenorhabditis|Rep:
           Protein ced-11 - Caenorhabditis elegans
          Length = 1418

 Score = 34.3 bits (75), Expect = 3.1
 Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = +3

Query: 327 FYSNPQKSYDYFSEVLQLIHGF-VVRLNFHFNIKKIIYYEC 446
           F ++P K+Y    + ++  +GF + +L FH N ++II +EC
Sbjct: 559 FSTSPAKAYQLLCQPMEYFYGFNMTQLAFHCNAREIIAHEC 599


>UniRef50_A7CWP6 Cluster: CDP-diacylglycerol--glycerol-3-phosphate
           3-phosphatidyltransferase; n=1; Opitutaceae bacterium
           TAV2|Rep: CDP-diacylglycerol--glycerol-3-phosphate
           3-phosphatidyltransferase - Opitutaceae bacterium TAV2
          Length = 202

 Score = 33.1 bits (72), Expect = 7.1
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = -3

Query: 642 WLDTHLIRKQQLLYNFLQLLHATTSYLYKISIRI--YILKSNVIQ*ILNFTRLCQ 484
           WLD H+ RKQ ++ NF + + A T  ++ I + +    +  N I  +L    LC+
Sbjct: 46  WLDGHIARKQGIVSNFGKFMDALTDKIFVIGLMVAFVAIYHNPIWIVLALITLCR 100


>UniRef50_A5IZI2 Cluster: Putative uncharacterized protein; n=1;
           Mycoplasma agalactiae|Rep: Putative uncharacterized
           protein - Mycoplasma agalactiae
          Length = 131

 Score = 33.1 bits (72), Expect = 7.1
 Identities = 25/83 (30%), Positives = 41/83 (49%)
 Frame = +3

Query: 213 MISLDLKHIYVVVKVKNILSVCCLVMRMFLILLVLNDRFYSNPQKSYDYFSEVLQLIHGF 392
           ++SL  +HI V+V V  I+S C L   +  I + L   FY N  KS D  +  + +I   
Sbjct: 43  LMSLWYRHISVLVIVV-IISTCALYPWLMTITMRL---FYRNYYKSADLVTSRVSIISSL 98

Query: 393 VVRLNFHFNIKKIIYYECLFLKW 461
           V+    H N   +++   +F K+
Sbjct: 99  VIAQFIHLNNIILLFKFVVFKKY 121


>UniRef50_Q01055 Cluster: Capsid assembly protein 63; n=3;
           Herpesviridae|Rep: Capsid assembly protein 63 -
           Saimiriine herpesvirus 2 (strain 11) (SaHV-2)
           (Herpesvirus saimiri)
          Length = 899

 Score = 33.1 bits (72), Expect = 7.1
 Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
 Frame = +3

Query: 192 LRCCDMGMISLDLKHIYVVVKVKNILSVCCLVMRMFLILLVLNDRFYSNPQKSYDYFSEV 371
           ++C +  + S +++HI  +++   +   CC   R+   +L+ N  F SN  K Y+ F  +
Sbjct: 313 IKCSNKSLTSSEIRHIKELLESCGLTEECC--HRLQTSVLISNVSFTSNSWKGYETFISL 370

Query: 372 ---LQLIHGFVVRLNFHFN 419
              L L   F  +  F+F+
Sbjct: 371 ISQLVLFSDFFYKCLFYFS 389


>UniRef50_A0DL78 Cluster: Chromosome undetermined scaffold_55, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_55,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 2519

 Score = 32.7 bits (71), Expect = 9.4
 Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 10/79 (12%)
 Frame = +3

Query: 162 GLIARSDNSALRCCDMGMISLD--LKHIYVVVKVK-----NILSVCCLVMR-MFLILLVL 317
           GL+ ++D    +  D+ +ISLD  L+ I V ++        IL +C  + R +F +LL  
Sbjct: 80  GLLCQNDRQVTQAFDIALISLDQVLRQITVYLRASGFLCLQILQICNDLFRIVFSVLLKN 139

Query: 318 NDRFY--SNPQKSYDYFSE 368
            DRF   S  Q+  +Y SE
Sbjct: 140 QDRFIEDSYKQQILEYLSE 158


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 615,192,089
Number of Sequences: 1657284
Number of extensions: 11266282
Number of successful extensions: 24830
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 23955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24802
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 58677691418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)