Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30049X
(535 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38; Eukaryo... 159 5e-38
UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform; n=... 156 3e-37
UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein... 154 1e-36
UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55; Eukar... 147 2e-34
UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2; E... 136 2e-31
UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n... 124 1e-27
UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9; Eukaryot... 122 5e-27
UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S riboso... 122 7e-27
UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S riboso... 119 4e-26
UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillard... 115 6e-25
UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing ... 105 6e-22
UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1; Encephal... 91 1e-17
UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1; Methano... 82 9e-15
UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4; Pyrobac... 81 2e-14
UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga ... 78 1e-13
UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12; Euryar... 78 1e-13
UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1; Th... 73 3e-12
UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4; Desulfu... 73 3e-12
UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2; Methanobact... 67 2e-10
UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2; Euryarc... 66 6e-10
UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5; Sulfolo... 63 4e-09
UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmenta... 62 8e-09
UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1; Methanococc... 59 5e-08
UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4; Euryarc... 59 7e-08
UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1; Nanoarc... 56 4e-07
UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_030011... 55 9e-07
UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3; Thermop... 55 1e-06
UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3; Me... 54 3e-06
UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1; Me... 54 3e-06
UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6; Halobac... 49 6e-05
UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2; Thermoprote... 47 3e-04
UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1; Picroph... 46 7e-04
UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2; Bigelowi... 45 0.001
UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n... 42 0.012
UniRef50_UPI000038E364 Cluster: hypothetical protein Faci_030005... 34 2.3
UniRef50_Q556N8 Cluster: Putative uncharacterized protein; n=2; ... 33 4.1
UniRef50_Q2R2L4 Cluster: Leucine Rich Repeat family protein, exp... 33 5.4
UniRef50_Q5UP36 Cluster: Cysteinyl-tRNA synthetase; n=1; Acantha... 33 5.4
UniRef50_Q7U147 Cluster: PROBABLE OXIDASE; n=7; Mycobacterium tu... 32 7.2
UniRef50_A4Y015 Cluster: Sensor protein; n=5; Pseudomonas|Rep: S... 32 7.2
UniRef50_A5DD78 Cluster: Putative uncharacterized protein; n=1; ... 32 7.2
UniRef50_Q5FHB1 Cluster: High-affinity zinc uptake system protei... 32 9.5
UniRef50_A7N5S6 Cluster: Putative uncharacterized protein; n=1; ... 32 9.5
UniRef50_A7BDQ0 Cluster: Putative uncharacterized protein; n=1; ... 32 9.5
UniRef50_Q7R6F8 Cluster: GLP_574_3560_6541; n=1; Giardia lamblia... 32 9.5
UniRef50_Q4DSS9 Cluster: Ribose-phosphate pyrophosphokinase, put... 32 9.5
UniRef50_Q293C6 Cluster: GA20855-PA; n=1; Drosophila pseudoobscu... 32 9.5
UniRef50_A2DLM0 Cluster: Ser/Thr protein phosphatase, putative; ... 32 9.5
>UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38;
Eukaryota|Rep: 40S ribosomal protein S4 - Drosophila
melanogaster (Fruit fly)
Length = 261
Score = 159 bits (385), Expect = 5e-38
Identities = 74/89 (83%), Positives = 79/89 (88%)
Frame = +3
Query: 3 KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 182
KKHLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+IFLRNRLKYAL G EV KIV
Sbjct: 6 KKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAEVTKIV 65
Query: 183 KQRLIKVDGKVRTDTTYPAGFMDVSQLRR 269
QRL+KVDGKVRTD TYPAG+MDV L +
Sbjct: 66 MQRLVKVDGKVRTDPTYPAGYMDVITLEK 94
Score = 139 bits (337), Expect = 3e-32
Identities = 62/88 (70%), Positives = 72/88 (81%)
Frame = +2
Query: 257 SIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYP 436
++EKT E FRL+YDVKGRF IHRI+ EEAKYKLCKVK+ G K VP+LVTHDGRTIRYP
Sbjct: 91 TLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQLGAKGVPFLVTHDGRTIRYP 150
Query: 437 DPLIKVNDSIQLDIATTKIMDFIKLSLG 520
DPLI NDS+Q+DIA+ KI D+IK G
Sbjct: 151 DPLIHANDSVQVDIASGKITDYIKFDSG 178
>UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform;
n=137; Eukaryota|Rep: 40S ribosomal protein S4, X
isoform - Homo sapiens (Human)
Length = 263
Score = 156 bits (378), Expect = 3e-37
Identities = 71/84 (84%), Positives = 76/84 (90%)
Frame = +3
Query: 3 KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 182
KKHLKR+ APK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+EV KI
Sbjct: 6 KKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKIC 65
Query: 183 KQRLIKVDGKVRTDTTYPAGFMDV 254
QR IK+DGKVRTD TYPAGFMDV
Sbjct: 66 MQRFIKIDGKVRTDITYPAGFMDV 89
Score = 143 bits (346), Expect = 3e-33
Identities = 63/88 (71%), Positives = 73/88 (82%)
Frame = +2
Query: 257 SIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYP 436
SI+KT E FRLIYD KGRF +HRITPEEAKYKLCKV+++ G K +P+LVTHD RTIRYP
Sbjct: 91 SIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYP 150
Query: 437 DPLIKVNDSIQLDIATTKIMDFIKLSLG 520
DPLIKVND+IQ+D+ T KI DFIK G
Sbjct: 151 DPLIKVNDTIQIDLETGKITDFIKFDTG 178
>UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein
S4, X isoform (LOC126235), mRNA; n=1; Takifugu
rubripes|Rep: similar to 40S ribosomal protein S4, X
isoform (LOC126235), mRNA - Takifugu rubripes
Length = 291
Score = 154 bits (374), Expect = 1e-36
Identities = 70/84 (83%), Positives = 75/84 (89%)
Frame = +3
Query: 3 KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 182
KKHLKR+ APK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+EV KI
Sbjct: 6 KKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKIC 65
Query: 183 KQRLIKVDGKVRTDTTYPAGFMDV 254
QR IK+DGKVRTD TYP GFMDV
Sbjct: 66 MQRFIKIDGKVRTDITYPTGFMDV 89
Score = 89.4 bits (212), Expect(2) = 2e-27
Identities = 37/55 (67%), Positives = 47/55 (85%)
Frame = +2
Query: 344 KYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIK 508
+YKLCKVK++ G K +P+LVTHD RTIRYPDPLIKVND++++D+ T KI DFIK
Sbjct: 152 QYKLCKVKKILIGTKGIPHLVTHDARTIRYPDPLIKVNDTVRIDLDTGKITDFIK 206
Score = 55.6 bits (128), Expect(2) = 2e-27
Identities = 25/30 (83%), Positives = 27/30 (90%)
Frame = +2
Query: 257 SIEKTNELFRLIYDVKGRFTIHRITPEEAK 346
SI+KT E FRLIYDVKGRFT+HRIT EEAK
Sbjct: 91 SIDKTGEHFRLIYDVKGRFTVHRITAEEAK 120
>UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55;
Eukaryota|Rep: 40S ribosomal protein S4-2 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 262
Score = 147 bits (356), Expect = 2e-34
Identities = 66/84 (78%), Positives = 74/84 (88%)
Frame = +3
Query: 3 KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 182
KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT EV+ I+
Sbjct: 6 KKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISIL 65
Query: 183 KQRLIKVDGKVRTDTTYPAGFMDV 254
QR I+VDGKVRTD TYPAGFMDV
Sbjct: 66 MQRHIQVDGKVRTDKTYPAGFMDV 89
Score = 127 bits (306), Expect = 2e-28
Identities = 57/91 (62%), Positives = 70/91 (76%)
Frame = +2
Query: 257 SIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYP 436
SI KTNE FRL+YD KGRF +H I EEAK+KLCKV+ + G K +PYL T+DGRTIRYP
Sbjct: 91 SIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYP 150
Query: 437 DPLIKVNDSIQLDIATTKIMDFIKLSLGTCV 529
DPLIK ND+I+LD+ KI++FIK +G V
Sbjct: 151 DPLIKPNDTIKLDLEENKIVEFIKFDVGNVV 181
>UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2;
Entamoeba histolytica HM-1:IMSS|Rep: 40S ribosomal
protein S4 - Entamoeba histolytica HM-1:IMSS
Length = 326
Score = 136 bits (330), Expect = 2e-31
Identities = 60/94 (63%), Positives = 70/94 (74%)
Frame = +3
Query: 3 KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 182
+ HLKRLNAP WML KLGG +AP+PS GPH ++ECLPL++ LRNRL YAL G EV IV
Sbjct: 6 RHHLKRLNAPHHWMLSKLGGTFAPKPSHGPHGMKECLPLILILRNRLNYALNGREVTMIV 65
Query: 183 KQRLIKVDGKVRTDTTYPAGFMDVSQLRRLMNCF 284
K R IK+DGK+RTDT YP GFMDV + R F
Sbjct: 66 KNRTIKIDGKIRTDTRYPVGFMDVLSIPRTKENF 99
Score = 105 bits (253), Expect = 5e-22
Identities = 45/88 (51%), Positives = 66/88 (75%)
Frame = +2
Query: 257 SIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYP 436
SI +T E FRL+Y+ K RF + +T E+AK+KLCK+++ G +PY+VTHDGRTIRYP
Sbjct: 91 SIPRTKENFRLMYNTKRRFCLVPLTAEQAKFKLCKIEKRVLGTGAIPYIVTHDGRTIRYP 150
Query: 437 DPLIKVNDSIQLDIATTKIMDFIKLSLG 520
P ++ ND+I+L++ T KI+DF+K +G
Sbjct: 151 HPELQANDTIKLNLETGKIVDFVKFDIG 178
>UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n=4;
Trichomonas vaginalis G3|Rep: 40S ribosomal protein
S4-C, putative - Trichomonas vaginalis G3
Length = 269
Score = 124 bits (300), Expect = 1e-27
Identities = 58/92 (63%), Positives = 68/92 (73%)
Frame = +3
Query: 9 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 188
HLKRL AP W+L K G +A PSTGPHKLRECLP+ IFLR+RLKYALT E + IVK+
Sbjct: 22 HLKRLTAPHHWLLAKSAGKFASHPSTGPHKLRECLPINIFLRDRLKYALTAKEAVAIVKR 81
Query: 189 RLIKVDGKVRTDTTYPAGFMDVSQLRRLMNCF 284
RL+KVDGKVRT+ YP G MDV +L + F
Sbjct: 82 RLVKVDGKVRTNYRYPTGLMDVIELGKSNELF 113
Score = 98.3 bits (234), Expect = 1e-19
Identities = 41/85 (48%), Positives = 61/85 (71%)
Frame = +2
Query: 266 KTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPL 445
K+NELFR+IYD KGRF +H I +EA +KL +V + G K +P++VTHDGRTI Y DP
Sbjct: 108 KSNELFRIIYDCKGRFCVHHIEAKEASFKLLRVNQFKIGAKGIPHVVTHDGRTISYVDPS 167
Query: 446 IKVNDSIQLDIATTKIMDFIKLSLG 520
++V+D+++ +I T ++ IK +G
Sbjct: 168 VRVHDALKFNIKTGEVESVIKFKVG 192
>UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9;
Eukaryota|Rep: 40S ribosomal protein S4 - Leishmania
major
Length = 273
Score = 122 bits (294), Expect = 5e-27
Identities = 56/87 (64%), Positives = 65/87 (74%)
Frame = +3
Query: 3 KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 182
KKHLKRL APK WML KL GV+APRP GPHKLRECLPL++ +RNRLKYAL E I+
Sbjct: 3 KKHLKRLYAPKDWMLSKLTGVFAPRPRPGPHKLRECLPLLVIIRNRLKYALNAREGEMIL 62
Query: 183 KQRLIKVDGKVRTDTTYPAGFMDVSQL 263
+Q L+ VD R D YPAGFMDV ++
Sbjct: 63 RQGLVHVDNHPRRDGKYPAGFMDVVEI 89
Score = 83.4 bits (197), Expect = 3e-15
Identities = 41/90 (45%), Positives = 53/90 (58%)
Frame = +2
Query: 260 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 439
I KT + FRL+YDVKGRF + ++ EA+ KL KV + T VP VTHDG IRYPD
Sbjct: 89 IPKTGDRFRLMYDVKGRFALVNLSEAEAQIKLMKVVNLYTATGRVPVAVTHDGHRIRYPD 148
Query: 440 PLIKVNDSIQLDIATTKIMDFIKLSLGTCV 529
P + D+I ++ K +D IK G V
Sbjct: 149 PHTSIGDTIVYNVKEKKCVDLIKNRQGKAV 178
>UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=1; Macaca mulatta|Rep:
PREDICTED: similar to 40S ribosomal protein S4, X
isoform - Macaca mulatta
Length = 244
Score = 122 bits (293), Expect = 7e-27
Identities = 60/90 (66%), Positives = 69/90 (76%)
Frame = +3
Query: 3 KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 182
K+HLKR+ A + WMLDKL GV+A RPSTGPHKLRECLP IFLRNRLKYALTG+EV KI
Sbjct: 17 KQHLKRVAALQHWMLDKLTGVFAARPSTGPHKLRECLP-HIFLRNRLKYALTGDEVKKIC 75
Query: 183 KQRLIKVDGKVRTDTTYPAGFMDVSQLRRL 272
Q IKVDGK+RTD P MDV + ++
Sbjct: 76 MQWFIKVDGKIRTDNNLPYWIMDVISIDKM 105
Score = 107 bits (257), Expect = 2e-22
Identities = 48/88 (54%), Positives = 62/88 (70%)
Frame = +2
Query: 230 LSCWIYGCFSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVT 409
L WI SI+K E F LIY + RF +HRITPEE KYKLCK++++ K +P+LV
Sbjct: 92 LPYWIMDVISIDKMGEDFCLIYGINRRFALHRITPEEVKYKLCKMRKIFVRAKGIPHLVI 151
Query: 410 HDGRTIRYPDPLIKVNDSIQLDIATTKI 493
HD T+R+PD LIKVND+IQ+D+ T KI
Sbjct: 152 HDIHTVRHPDSLIKVNDTIQIDLETGKI 179
>UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=3; Eutheria|Rep: PREDICTED:
similar to 40S ribosomal protein S4, X isoform - Canis
familiaris
Length = 240
Score = 119 bits (287), Expect = 4e-26
Identities = 54/70 (77%), Positives = 60/70 (85%)
Frame = +3
Query: 3 KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 182
+KHLK + APK WMLDKL GV+AP PSTGPHKLRECLPL+IFLRNRLKYALTG+EV KI
Sbjct: 6 RKHLKHVAAPKHWMLDKLTGVFAPHPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKIR 65
Query: 183 KQRLIKVDGK 212
Q IK+DGK
Sbjct: 66 MQHFIKMDGK 75
Score = 116 bits (279), Expect = 3e-25
Identities = 50/75 (66%), Positives = 60/75 (80%)
Frame = +2
Query: 296 DVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLD 475
D KGRF +HRITPEEAKYKL KV+++ G K +P+LVTHD RTIRYPDPLIK+ND+IQ+D
Sbjct: 76 DTKGRFAVHRITPEEAKYKLGKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKMNDTIQID 135
Query: 476 IATTKIMDFIKLSLG 520
+ T KI DF K G
Sbjct: 136 LETGKITDFFKFDTG 150
>UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillardia
theta|Rep: 40S ribosomal protein S4 - Guillardia theta
(Cryptomonas phi)
Length = 257
Score = 115 bits (277), Expect = 6e-25
Identities = 51/88 (57%), Positives = 66/88 (75%)
Frame = +3
Query: 3 KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 182
KKH KRLNAPK W+L+KLGG++APR S+GPHK + +PLVI +RN+LKY+ E L I+
Sbjct: 6 KKHYKRLNAPKKWLLNKLGGIWAPRSSSGPHKKQNSIPLVIVIRNKLKYSTNQRESLNIL 65
Query: 183 KQRLIKVDGKVRTDTTYPAGFMDVSQLR 266
K+ I VDGKVR D +PAG MDV ++
Sbjct: 66 KKNEIYVDGKVRADKNFPAGVMDVISIK 93
Score = 115 bits (277), Expect = 6e-25
Identities = 53/92 (57%), Positives = 71/92 (77%), Gaps = 1/92 (1%)
Frame = +2
Query: 257 SIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYP 436
SI+ T E +R++YD G F +HRIT +E+ +KLCKV RV+ G K +PY+VTHDGRTIR+P
Sbjct: 91 SIKTTKENYRVLYDNVGHFFLHRITIKESMFKLCKVIRVSIGSKGIPYIVTHDGRTIRFP 150
Query: 437 DPLIKVNDSIQLDIATTKIMDFIKLSLGT-CV 529
+ LIK NDSI LD+ K++DFIK S+G+ CV
Sbjct: 151 NLLIKSNDSIVLDLLNNKVIDFIKFSIGSLCV 182
>UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing
protein; n=1; Tetrahymena thermophila SB210|Rep:
Ribosomal family S4e containing protein - Tetrahymena
thermophila SB210
Length = 370
Score = 105 bits (252), Expect = 6e-22
Identities = 45/87 (51%), Positives = 62/87 (71%)
Frame = +2
Query: 260 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 439
IEKT++ FR++YD KGRF + ++ EEAKYKL KV A GP +PY+VTHD RTIR+P+
Sbjct: 204 IEKTDQSFRILYDTKGRFVLKSLSKEEAKYKLLKVTAKAIGPNQIPYIVTHDSRTIRFPN 263
Query: 440 PLIKVNDSIQLDIATTKIMDFIKLSLG 520
P IK+ D+++ D+ KI +F L G
Sbjct: 264 PEIKIGDTLKYDLVNNKIENFAHLESG 290
Score = 83.0 bits (196), Expect = 4e-15
Identities = 54/125 (43%), Positives = 68/125 (54%), Gaps = 31/125 (24%)
Frame = +3
Query: 3 KKHLKRLNAPKAWMLD-------------------------KLGGVY----APRPSTGPH 95
KKHLKR+NAPK+WML+ KL +Y A RPS GPH
Sbjct: 87 KKHLKRINAPKSWMLNKLGGIWVITFFAFRLRKNDFITTIPKLKFIYFKKQATRPSQGPH 146
Query: 96 KLRECLPLVIFLRNRLKYALTGNEVLKIV--KQRLIKVDGKVRTDTTYPAGFMDVSQLRR 269
KLRE LPL + L+ RL YAL G +V I+ K++ + VDGKVR D YP G MDV ++ +
Sbjct: 147 KLRESLPLSVLLKERLNYALNGRDVTLILNDKEQNVFVDGKVRRDKGYPTGLMDVVRIEK 206
Query: 270 LMNCF 284
F
Sbjct: 207 TDQSF 211
>UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S4 -
Encephalitozoon cuniculi
Length = 268
Score = 91.5 bits (217), Expect = 1e-17
Identities = 40/89 (44%), Positives = 59/89 (66%)
Frame = +3
Query: 3 KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 182
+ HLKR APK+WMLDK GG +A P++GPHK EC+PL + L+YA E+ I+
Sbjct: 6 RDHLKRKTAPKSWMLDKQGGTFALMPASGPHKKTECIPLGYLISRFLRYASNFKELSIIL 65
Query: 183 KQRLIKVDGKVRTDTTYPAGFMDVSQLRR 269
++ IKV+G+VRT++ +P G DV + +
Sbjct: 66 AEKNIKVNGRVRTNSHFPVGLFDVVSIEK 94
Score = 72.9 bits (171), Expect = 4e-12
Identities = 34/88 (38%), Positives = 59/88 (67%)
Frame = +2
Query: 242 IYGCFSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR 421
++ SIEKT E FR++Y+V +F +HRI+ EEA Y+L KV + + +PY+V+ G
Sbjct: 86 LFDVVSIEKTGEHFRVLYNVHKKFHLHRISSEEASYRLTKVTKKYEN-QGIPYIVSSCGL 144
Query: 422 TIRYPDPLIKVNDSIQLDIATTKIMDFI 505
+IR+ DP I + +I++ T+K++++I
Sbjct: 145 SIRFCDPAIDLGYTIKISNETSKVIEYI 172
>UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S4e -
Methanopyrus kandleri
Length = 260
Score = 81.8 bits (193), Expect = 9e-15
Identities = 41/90 (45%), Positives = 56/90 (62%), Gaps = 1/90 (1%)
Frame = +3
Query: 3 KKHLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKI 179
K+H+KRL AP AW + K GG +APRP GPH + +PL+I +R+ L YA E KI
Sbjct: 9 KRHVKRLAAPYAWPIPRKEGGKFAPRPYPGPHTMDTSVPLLILVRDMLGYADYAREARKI 68
Query: 180 VKQRLIKVDGKVRTDTTYPAGFMDVSQLRR 269
+ + I VDG VR + +P G MDV ++ R
Sbjct: 69 ITRGEIYVDGVVRKEPKFPVGIMDVVEIPR 98
Score = 32.3 bits (70), Expect = 7.2
Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 8/81 (9%)
Frame = +2
Query: 260 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT--IRY 433
I +T + +R++ + R + I+ EEA+ K+C++K + HDG+ +
Sbjct: 96 IPRTGDRYRVVMNEHHRLDVVPISEEEARVKVCRIKNKTYVRGGNLQITMHDGKNWLVEI 155
Query: 434 PDP------LIKVNDSIQLDI 478
DP + V DS+ L++
Sbjct: 156 EDPTDPKEDVYSVGDSLVLEL 176
>UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4;
Pyrobaculum|Rep: 30S ribosomal protein S4e - Pyrobaculum
aerophilum
Length = 238
Score = 81.0 bits (191), Expect = 2e-14
Identities = 40/86 (46%), Positives = 53/86 (61%), Gaps = 1/86 (1%)
Frame = +3
Query: 9 HLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 185
HL+R AP W + K GGV+ RPS GPH L LPL + +R+ LKYA T +E I+
Sbjct: 3 HLRRTLAPAWWPIPRKKGGVWVVRPSPGPHSLAYSLPLALIIRDVLKYAKTMHEARYIIS 62
Query: 186 QRLIKVDGKVRTDTTYPAGFMDVSQL 263
+ +KVDG VR D +P G MDV ++
Sbjct: 63 RGYVKVDGVVRRDYKFPVGLMDVIEI 88
>UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga
maquilingensis IC-167|Rep: Ribosomal protein S4E -
Caldivirga maquilingensis IC-167
Length = 237
Score = 78.2 bits (184), Expect = 1e-13
Identities = 35/85 (41%), Positives = 51/85 (60%)
Frame = +3
Query: 9 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 188
HL+R +P+ W +++ G ++ +PS GPH +PL + LR+ YA T E I+ +
Sbjct: 3 HLRRSTSPEWWPVERKGAPWSIKPSPGPHPANSSIPLAVLLRDVFHYAKTLREARLIIGK 62
Query: 189 RLIKVDGKVRTDTTYPAGFMDVSQL 263
+KVDGKVR D YP G MDV +L
Sbjct: 63 GYVKVDGKVRRDYKYPVGLMDVIEL 87
>UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanococcus maripaludis
Length = 244
Score = 77.8 bits (183), Expect = 1e-13
Identities = 37/84 (44%), Positives = 51/84 (60%)
Frame = +3
Query: 3 KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 182
+KHLKRL AP W L + + RPS GPH + + LPL++ +R+ LKYA E KI+
Sbjct: 7 RKHLKRLAAPANWQLPRKVKTFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAKKII 66
Query: 183 KQRLIKVDGKVRTDTTYPAGFMDV 254
+ I +DG R + +PAG MDV
Sbjct: 67 QTGKILIDGLKRKEYKHPAGLMDV 90
>UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1;
Thermofilum pendens Hrk 5|Rep: Ribosomal protein S4E,
central - Thermofilum pendens (strain Hrk 5)
Length = 251
Score = 73.3 bits (172), Expect = 3e-12
Identities = 35/83 (42%), Positives = 50/83 (60%)
Frame = +3
Query: 6 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 185
+HL+R AP W + + V+ +PS GPH L +P+ I LR+ YA T E +I+
Sbjct: 10 RHLRRSVAPPFWPIKRKEYVWTVKPSPGPHSLLSSIPIGIVLRDVFGYAKTMKEARRILA 69
Query: 186 QRLIKVDGKVRTDTTYPAGFMDV 254
R+I+VDG+V TD +P G MDV
Sbjct: 70 SRVIEVDGRVVTDYKFPVGLMDV 92
Score = 34.3 bits (75), Expect = 1.8
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +2
Query: 281 FRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTI 427
+R++ D + I PEEA YKL +++R T HDGR +
Sbjct: 102 YRVVPDPARKLRFVEIKPEEAGYKLAQIRRKMTVKNGDLQFTLHDGRNV 150
>UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4;
Desulfurococcales|Rep: 30S ribosomal protein S4e -
Aeropyrum pernix
Length = 253
Score = 73.3 bits (172), Expect = 3e-12
Identities = 34/87 (39%), Positives = 52/87 (59%)
Frame = +3
Query: 3 KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 182
++ LK L AP+ W + + +A +P GPH + LPL++ +RN L YA T E K++
Sbjct: 7 QRRLKALAAPRFWPILRKEYKWAVKPRPGPHPAEKSLPLLLIVRNVLGYAQTAREARKLI 66
Query: 183 KQRLIKVDGKVRTDTTYPAGFMDVSQL 263
+ +VDG VR D +P GFMDV ++
Sbjct: 67 SEGHFRVDGVVRKDYKFPVGFMDVIEV 93
>UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2;
Methanobacteriaceae|Rep: Ribosomal protein S4e -
Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM
861)
Length = 242
Score = 67.3 bits (157), Expect = 2e-10
Identities = 30/87 (34%), Positives = 46/87 (52%)
Frame = +3
Query: 3 KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 182
+KHLK APK W + + +PS G H + L L + +R+ LK A E +I+
Sbjct: 7 RKHLKTYKAPKTWPIHPKEDTWTVKPSAGSHSIENSLSLTLVIRDILKLADNSREAKRII 66
Query: 183 KQRLIKVDGKVRTDTTYPAGFMDVSQL 263
+ VDG+V D +P GFMD+ ++
Sbjct: 67 NSGNVLVDGRVIKDYKFPVGFMDIIEI 93
Score = 50.4 bits (115), Expect = 3e-05
Identities = 29/90 (32%), Positives = 46/90 (51%)
Frame = +2
Query: 260 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 439
I KT E++R++ D KGR +++I EE KLCK+ +T + HDG+ + +
Sbjct: 93 IPKTGEVYRVLLDKKGRLQLNKI--EENDSKLCKIVNKSTIKGGKIQVNLHDGKNVIIDE 150
Query: 440 PLIKVNDSIQLDIATTKIMDFIKLSLGTCV 529
V D I L + +I + +L G CV
Sbjct: 151 NDYNVGDVIDLKVPDHEINEVFELKEGACV 180
>UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2;
Euryarchaeota|Rep: 30S ribosomal protein S4E -
Uncultured methanogenic archaeon RC-I
Length = 234
Score = 65.7 bits (153), Expect = 6e-10
Identities = 31/81 (38%), Positives = 45/81 (55%)
Frame = +3
Query: 9 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 188
HLKR+ AP+ W + + + +P G H +PLV+ LR+ LK A +E+ KI+ +
Sbjct: 5 HLKRVAAPRTWPITRKTSKWVAKPMPGAHSEERGMPLVVVLRDLLKVADNTSEIKKILHE 64
Query: 189 RLIKVDGKVRTDTTYPAGFMD 251
+ VDGKVR D Y G D
Sbjct: 65 GKVLVDGKVRKDYRYTVGMFD 85
>UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5;
Sulfolobaceae|Rep: 30S ribosomal protein S4e -
Sulfolobus acidocaldarius
Length = 244
Score = 62.9 bits (146), Expect = 4e-09
Identities = 33/85 (38%), Positives = 45/85 (52%)
Frame = +3
Query: 9 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 188
H+ R AP + K + R GPHK++E +PL I L+ LK T E +I+
Sbjct: 3 HITRFEAPWFLKVGKKEYKWIIRSRAGPHKIQESVPLAILLKYYLKAVDTTREAKRIIFD 62
Query: 189 RLIKVDGKVRTDTTYPAGFMDVSQL 263
+ VDGKVR D YP G MDV ++
Sbjct: 63 GKVLVDGKVRRDYKYPVGLMDVVEI 87
>UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmental
samples|Rep: Ribosomal protein S4 - uncultured marine
group II euryarchaeote DeepAnt-JyKC7
Length = 232
Score = 62.1 bits (144), Expect = 8e-09
Identities = 28/82 (34%), Positives = 45/82 (54%)
Frame = +3
Query: 9 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 188
H+KRL P++W L + ++ +P+ G H C+PL + LR+ L A E +++
Sbjct: 5 HMKRLTMPRSWPLTRKTDIWVQKPNPGGHSDEMCMPLGVILRDVLDLAHNLREAKRMLAT 64
Query: 189 RLIKVDGKVRTDTTYPAGFMDV 254
R + VDG++ TD G MDV
Sbjct: 65 RQVLVDGRIETDLGRGVGLMDV 86
Score = 35.1 bits (77), Expect = 1.0
Identities = 19/53 (35%), Positives = 25/53 (47%)
Frame = +2
Query: 281 FRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 439
FR I DV G+ I+ + A KLC+V +T + HDGR I D
Sbjct: 94 FRCILDVNGKLRYRSISDKAAASKLCRVMGKSTITDGKTQIHLHDGRNILVSD 146
>UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1;
Methanococcoides burtonii DSM 6242|Rep: Ribosomal
protein S4E - Methanococcoides burtonii (strain DSM
6242)
Length = 236
Score = 59.3 bits (137), Expect = 5e-08
Identities = 25/82 (30%), Positives = 41/82 (50%)
Frame = +3
Query: 9 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 188
H KR++ PK+W + K + GPH + +PL + LR+ L E +++ +
Sbjct: 4 HQKRISVPKSWQISKKSNKWITSTRPGPHNRLQSIPLAVILRDMLGVVDNRAEAKRVLSE 63
Query: 189 RLIKVDGKVRTDTTYPAGFMDV 254
+ VDG R D +P G MD+
Sbjct: 64 GNVLVDGVARKDLRFPVGLMDI 85
>UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanosarcina mazei (Methanosarcina frisia)
Length = 235
Score = 58.8 bits (136), Expect = 7e-08
Identities = 29/85 (34%), Positives = 42/85 (49%)
Frame = +3
Query: 9 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 188
H KRL+ PK+W + + G + GPH LPL + +R+ LK E +I+ +
Sbjct: 3 HQKRLSVPKSWKVGRKGNKWISTTRPGPHSQARSLPLGLIIRDVLKLVDNNREGKRILSE 62
Query: 189 RLIKVDGKVRTDTTYPAGFMDVSQL 263
+ VDG R D +P G DV L
Sbjct: 63 GKVLVDGISRKDLRFPVGLFDVITL 87
>UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S4e -
Nanoarchaeum equitans
Length = 234
Score = 56.4 bits (130), Expect = 4e-07
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Frame = +3
Query: 3 KKHLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKI 179
K+HL+ L P+ W + K G + +PS GPH +P+ ++LR+ L A EV +
Sbjct: 6 KRHLRSLAVPRTWPVPRKSRGYWIVKPSPGPHSKEFAMPIAVWLRDYLGLAENMREVRYL 65
Query: 180 VKQRLIKVDGKVRTDTTYPAGFMDV 254
+ + VDG+ D +P G DV
Sbjct: 66 LNNGKVLVDGRPIKDYKFPVGLFDV 90
>UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_03001139;
n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
protein Faci_03001139 - Ferroplasma acidarmanus fer1
Length = 241
Score = 55.2 bits (127), Expect = 9e-07
Identities = 25/91 (27%), Positives = 48/91 (52%)
Frame = +3
Query: 15 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 194
K + A + + + ++ P+ H + +P++I LR+ LK E+ +I+ +
Sbjct: 7 KIMMASRKLKIPRKTNFWSVTPTPATHSKEDSIPMLIALRDYLKLGDKEREITRILNNNM 66
Query: 195 IKVDGKVRTDTTYPAGFMDVSQLRRLMNCFV 287
+KVDG++ D +P GFMDV + L N ++
Sbjct: 67 VKVDGRIVKDRRFPVGFMDVLSIDTLENDYI 97
Score = 37.5 bits (83), Expect = 0.19
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Frame = +2
Query: 257 SIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK-VKRVATGPKNVPYLVTHDGRTIRY 433
SI+ + ++YD KG+ I + P KL K VK+ G + L HDG+TI
Sbjct: 88 SIDTLENDYIIVYDRKGKLVIRQNAPGNKGLKLFKVVKKTIIGTGKI-QLGFHDGKTIVT 146
Query: 434 PDPLIKVNDSIQLDIATTKIMDFIKLSLG 520
I +D + + I +I + +K++ G
Sbjct: 147 DRKDINTSDVLLMKIPDLEIENVLKIAEG 175
>UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3;
Thermoplasma|Rep: 30S ribosomal protein S4e -
Thermoplasma acidophilum
Length = 235
Score = 54.8 bits (126), Expect = 1e-06
Identities = 31/87 (35%), Positives = 43/87 (49%)
Frame = +2
Query: 260 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 439
IE E +R++Y+ +G + + T E A KL KV+ P N L THDGRT D
Sbjct: 86 IEINGESYRVVYNDQGALVLMKETKERASMKLLKVRSKVIAPGNRIQLGTHDGRTFITDD 145
Query: 440 PLIKVNDSIQLDIATTKIMDFIKLSLG 520
KV D + + KI + IK+ G
Sbjct: 146 KSKKVGDVWAVSVPDMKISEIIKMQPG 172
Score = 46.4 bits (105), Expect = 4e-04
Identities = 24/83 (28%), Positives = 42/83 (50%)
Frame = +3
Query: 15 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 194
KRL + + + + P P+ G H + + L+ +R+ LK + E +I+ L
Sbjct: 6 KRLMVSRQVKIPRKTYFWGPTPNPGMHPKDQSVTLLSIIRDYLKLSDKEREAARILANGL 65
Query: 195 IKVDGKVRTDTTYPAGFMDVSQL 263
+KVDGK + + GFMDV ++
Sbjct: 66 VKVDGKTVREKKFAVGFMDVIEI 88
>UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3;
Methanomicrobiales|Rep: Ribosomal protein S4E, central -
Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498
/ JR1)
Length = 242
Score = 53.6 bits (123), Expect = 3e-06
Identities = 29/89 (32%), Positives = 48/89 (53%)
Frame = +3
Query: 6 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 185
K+LKRL AP +W + K + + + GPH LP+ ++LR + A +EV KI+
Sbjct: 3 KYLKRLVAPGSWHIPKKVQKFVMKTAPGPHN-AGALPVGVWLREHIGLAQNASEVKKILH 61
Query: 186 QRLIKVDGKVRTDTTYPAGFMDVSQLRRL 272
QR + V+G+ D+ G D+ + +L
Sbjct: 62 QRDVLVNGRACKDSRMGLGVFDIVSIPKL 90
Score = 36.3 bits (80), Expect = 0.44
Identities = 23/81 (28%), Positives = 35/81 (43%)
Frame = +2
Query: 242 IYGCFSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR 421
++ SI K + +R+ DVKG I E AK +LCK++ T L G
Sbjct: 81 VFDIVSIPKLGKHYRIQLDVKGNLVAIEIPAESAKTRLCKIRNKTTVKGGKVQLNFAFGA 140
Query: 422 TIRYPDPLIKVNDSIQLDIAT 484
+ D K DS+ + + T
Sbjct: 141 NV-LADNTYKAKDSVVVTLGT 160
>UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1;
Methanocorpusculum labreanum Z|Rep: Ribosomal protein
S4E, central - Methanocorpusculum labreanum (strain ATCC
43576 / DSM 4855 / Z)
Length = 239
Score = 53.6 bits (123), Expect = 3e-06
Identities = 26/70 (37%), Positives = 41/70 (58%)
Frame = +3
Query: 15 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 194
KR+ AP AW + + Y S+GPH LP+ I+LR+ +++AL EV KI+ R
Sbjct: 5 KRMTAPDAWQIARKESKYVVSTSSGPHD-GSALPIGIWLRDHMQFALNTKEVRKILHDRQ 63
Query: 195 IKVDGKVRTD 224
+ ++G + TD
Sbjct: 64 VLLNGHIVTD 73
>UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6;
Halobacteriaceae|Rep: 30S ribosomal protein S4E -
Haloarcula marismortui (Halobacterium marismortui)
Length = 234
Score = 49.2 bits (112), Expect = 6e-05
Identities = 24/82 (29%), Positives = 41/82 (50%)
Frame = +3
Query: 9 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 188
H KRL+ P +W +++ + + GPH +PL+I LR+ L YA E + +
Sbjct: 4 HQKRLSVPNSWPVERKTATFTVKAGAGPHG-ESGVPLLIVLRDVLGYADNRKEARYALNE 62
Query: 189 RLIKVDGKVRTDTTYPAGFMDV 254
+ ++GK +D P G D+
Sbjct: 63 DNVLINGKAISDEERPVGMFDI 84
>UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2;
Thermoprotei|Rep: Ribosomal protein S4E - Cenarchaeum
symbiosum
Length = 238
Score = 46.8 bits (106), Expect = 3e-04
Identities = 27/86 (31%), Positives = 38/86 (44%)
Frame = +3
Query: 6 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 185
K LKR AP W + + G + G H +P + LR+ L T E K +
Sbjct: 8 KKLKRQMAPSFWGITRKGKRFVVTVHPGAHSKHRSIPSAVLLRDTLGAVSTLREAKKSIY 67
Query: 186 QRLIKVDGKVRTDTTYPAGFMDVSQL 263
++VDG RT + G MDV +L
Sbjct: 68 SGNVEVDGVKRTSLHHGIGLMDVVEL 93
>UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1;
Picrophilus torridus|Rep: 30S ribosomal protein S4e -
Picrophilus torridus
Length = 234
Score = 45.6 bits (103), Expect = 7e-04
Identities = 26/79 (32%), Positives = 39/79 (49%)
Frame = +3
Query: 15 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 194
K + AP+ + + +A G HK +PL+I LR+ LK E+ +I+ L
Sbjct: 6 KIMMAPRKLKIARKSRFWAVNSLPGSHKKDSSIPLLIALRDYLKLGDKEREITRILTNSL 65
Query: 195 IKVDGKVRTDTTYPAGFMD 251
+ VDGKV + GFMD
Sbjct: 66 VMVDGKVVKERRRGIGFMD 84
>UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2;
Bigelowiella natans|Rep: 40S ribosomal protein S4 -
Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 242
Score = 45.2 bits (102), Expect = 0.001
Identities = 22/89 (24%), Positives = 43/89 (48%)
Frame = +2
Query: 257 SIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYP 436
S N+ +R++ G+ T++ I E K+CKV ++ ++T D R ++
Sbjct: 91 SFPLANKHYRVLLSKAGKLTVYEINQNEKDLKICKVIKIINASSKNKIIITDDLRELKIN 150
Query: 437 DPLIKVNDSIQLDIATTKIMDFIKLSLGT 523
IKV DS+ + +I+ +K +G+
Sbjct: 151 YAKIKVEDSLLIKTINDEIVYALKFEVGS 179
Score = 41.5 bits (93), Expect = 0.012
Identities = 23/83 (27%), Positives = 39/83 (46%)
Frame = +3
Query: 3 KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 182
KKH KR+++ K G++ + S+GPH + + L+ ++ A E K+V
Sbjct: 6 KKHQKRISSNTMIKYKKKLGIFNTKISSGPHSKVKSVSLLNIIKKFFHLADNNQEAQKVV 65
Query: 183 KQRLIKVDGKVRTDTTYPAGFMD 251
K + V+GK +P MD
Sbjct: 66 KTGFLYVNGKKCLSHKFPISLMD 88
>UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 17 contig 1, DNA
sequence - Ostreococcus tauri
Length = 197
Score = 41.5 bits (93), Expect = 0.012
Identities = 27/88 (30%), Positives = 45/88 (51%)
Frame = -1
Query: 523 SSQTQLDEVHNLRSCDV*LDGIVDFDKWVWVADGAAIMRYQVRNILRSGRHTLDFTQLVL 344
S+ +LD + +L DV +G+ D + V +GAA+++ R+ L QLVL
Sbjct: 102 SADVELDRIGDLVRRDVDHNGVTLLDHGIRVTNGAAVVQTDARHALVPELLAPHLAQLVL 161
Query: 343 SLLRGDTVDCESALNIID*TKQFISLLN 260
D V ES+L ++D + FI+L +
Sbjct: 162 RFDSLDAVHNESSLGVVDEPEVFIALFD 189
>UniRef50_UPI000038E364 Cluster: hypothetical protein Faci_03000514;
n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
protein Faci_03000514 - Ferroplasma acidarmanus fer1
Length = 317
Score = 33.9 bits (74), Expect = 2.3
Identities = 18/54 (33%), Positives = 27/54 (50%)
Frame = -3
Query: 254 NIHKSSRISSVSPNFPINLYEALFHNFQDFVSGQSILQTIPQENHQGQALAQLV 93
NI + I + N P E LFH F DFVSG ++ I + + + +AQ +
Sbjct: 59 NILEIINIPDIKYNIPDAEKEILFHKFIDFVSGNKLISGIMKIMYLDRKIAQFI 112
>UniRef50_Q556N8 Cluster: Putative uncharacterized protein; n=2;
Dictyostelium discoideum|Rep: Putative uncharacterized
protein - Dictyostelium discoideum AX4
Length = 1536
Score = 33.1 bits (72), Expect = 4.1
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = -3
Query: 254 NIHKSSRISSVSPNFPINLYEALFHNFQDFVSGQSILQTIPQENHQGQALAQL 96
N+ KS S F I LY+ H F++ S +SIL Q NH + L +L
Sbjct: 1239 NLLKSLESMSAENGFHIGLYKIYEHYFKNVYSMKSILHNQEQLNHYSKKLLEL 1291
>UniRef50_Q2R2L4 Cluster: Leucine Rich Repeat family protein,
expressed; n=3; Oryza sativa|Rep: Leucine Rich Repeat
family protein, expressed - Oryza sativa subsp. japonica
(Rice)
Length = 1026
Score = 32.7 bits (71), Expect = 5.4
Identities = 19/39 (48%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +3
Query: 381 DLRMFRTW*RMMAA-PSATQTHLSKSTIPSS*TSQLRRL 494
DL R W +A PS T HLS ++PSS T Q RRL
Sbjct: 208 DLSSARDWPLAIAMLPSLTALHLSSCSLPSSSTQQWRRL 246
>UniRef50_Q5UP36 Cluster: Cysteinyl-tRNA synthetase; n=1;
Acanthamoeba polyphaga mimivirus|Rep: Cysteinyl-tRNA
synthetase - Mimivirus
Length = 509
Score = 32.7 bits (71), Expect = 5.4
Identities = 14/54 (25%), Positives = 32/54 (59%)
Frame = +3
Query: 42 MLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKV 203
+LDKLG +Y S+ HK+++ + ++I R++L+ ++ +K++L +
Sbjct: 421 LLDKLGFIYRVGNSSSSHKIKDLMNILIETRSQLRQLTRNPDLSPGIKKQLFDI 474
>UniRef50_Q7U147 Cluster: PROBABLE OXIDASE; n=7; Mycobacterium
tuberculosis complex|Rep: PROBABLE OXIDASE -
Mycobacterium bovis
Length = 504
Score = 32.3 bits (70), Expect = 7.2
Identities = 17/37 (45%), Positives = 22/37 (59%)
Frame = -2
Query: 120 PGASTRATCGDRLTVSVHTHRQVCPTSMLWERLSASN 10
PG RAT GD + VSV T+R PTS+ W ++ N
Sbjct: 93 PGPLIRATVGDEIVVSV-TNRLGDPTSVHWHGIALRN 128
>UniRef50_A4Y015 Cluster: Sensor protein; n=5; Pseudomonas|Rep:
Sensor protein - Pseudomonas mendocina ymp
Length = 783
Score = 32.3 bits (70), Expect = 7.2
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = -1
Query: 469 LDGIVDFDKWVWVADGAAIMRYQVRNILRSGRHTLDFTQLVLSLLR 332
L+ I+ F + + + G + QVR+ILR+GRH L VL + R
Sbjct: 420 LNSILGFAQLLEMDRGTPAQQAQVRHILRAGRHLLGLINEVLDIAR 465
>UniRef50_A5DD78 Cluster: Putative uncharacterized protein; n=1;
Pichia guilliermondii|Rep: Putative uncharacterized
protein - Pichia guilliermondii (Yeast) (Candida
guilliermondii)
Length = 1838
Score = 32.3 bits (70), Expect = 7.2
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = -3
Query: 290 LDETVH*SSQLRNIHKSSRISSVSPNFPINLYEALFHN-FQDFVSGQSILQTIPQENHQG 114
L V + +L NI+ SVS F NL +H F++FV+ +I+ T+ ++N +
Sbjct: 421 LQSIVSANPELTNINALLVTYSVSDEFNENLLAPFYHEFFREFVNNAAIVMTLLRDNEED 480
Query: 113 QALAQL 96
L+ L
Sbjct: 481 FLLSSL 486
>UniRef50_Q5FHB1 Cluster: High-affinity zinc uptake system protein
znuA; n=4; canis group|Rep: High-affinity zinc uptake
system protein znuA - Ehrlichia ruminantium (strain
Gardel)
Length = 287
Score = 31.9 bits (69), Expect = 9.5
Identities = 19/42 (45%), Positives = 25/42 (59%)
Frame = +2
Query: 290 IYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHD 415
+YD R TI RIT E A+ K+K++ K PY+VTHD
Sbjct: 153 VYDKNARLTIIRIT-ELAE----KIKQLLNTVKTKPYVVTHD 189
>UniRef50_A7N5S6 Cluster: Putative uncharacterized protein; n=1;
Vibrio harveyi ATCC BAA-1116|Rep: Putative
uncharacterized protein - Vibrio harveyi ATCC BAA-1116
Length = 682
Score = 31.9 bits (69), Expect = 9.5
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Frame = +2
Query: 248 GC-FSIE--KTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDG 418
GC FSI + ++ ++ G +T+H ++ E A + + + G K Y+VTH G
Sbjct: 45 GCNFSIHAPSSKDIQLALFAEDGTYTLHDLSGEYAGIRHTFIPDIKPGQK-YGYIVTHQG 103
Query: 419 RTIRYPDPLIKVND 460
+ + DP K D
Sbjct: 104 QPLLISDPYAKSID 117
>UniRef50_A7BDQ0 Cluster: Putative uncharacterized protein; n=1;
Actinomyces odontolyticus ATCC 17982|Rep: Putative
uncharacterized protein - Actinomyces odontolyticus ATCC
17982
Length = 368
Score = 31.9 bits (69), Expect = 9.5
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = -2
Query: 135 SSGKSPGASTRATCGDRLTVSVHTHRQVCPTSMLW 31
S GKSP + R+ DRL V+ H+HR V +W
Sbjct: 284 SRGKSPFVADRSHFHDRLLVAGHSHRGVVAILWMW 318
>UniRef50_Q7R6F8 Cluster: GLP_574_3560_6541; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_574_3560_6541 - Giardia lamblia ATCC
50803
Length = 993
Score = 31.9 bits (69), Expect = 9.5
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = -3
Query: 233 ISSVSPNFPINLYEALFHNFQDFVSGQSILQTIPQ 129
I SVS +FP +Y+ L N +F + QS LQT+ Q
Sbjct: 629 IFSVSRSFPEFIYDTLTSNSSEFYTSQSQLQTMAQ 663
>UniRef50_Q4DSS9 Cluster: Ribose-phosphate pyrophosphokinase,
putative; n=3; Trypanosoma|Rep: Ribose-phosphate
pyrophosphokinase, putative - Trypanosoma cruzi
Length = 705
Score = 31.9 bits (69), Expect = 9.5
Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 9/86 (10%)
Frame = +2
Query: 287 LIYDVKGRFTIHRITPEEAKYKLCKV--KRVATGPKNVPYLVTH-------DGRTIRYPD 439
L+ DVKGR I T + K+C+ K G + + TH + R ++ P
Sbjct: 594 LVGDVKGRLCIIVDTTIDEAIKICRTAWKLHEAGASRIILIATHLILSAGAEERLVKSPI 653
Query: 440 PLIKVNDSIQLDIATTKIMDFIKLSL 517
LI V DS+ D+ K + KL L
Sbjct: 654 DLIVVTDSVNQDVVFKKPLFAQKLRL 679
>UniRef50_Q293C6 Cluster: GA20855-PA; n=1; Drosophila
pseudoobscura|Rep: GA20855-PA - Drosophila pseudoobscura
(Fruit fly)
Length = 1177
Score = 31.9 bits (69), Expect = 9.5
Identities = 21/59 (35%), Positives = 28/59 (47%)
Frame = +2
Query: 23 KRSQSMDVGQTWRCVCTETVNRSPQVARVLAPGDFPEESSEVCFDRKRSPENCETTPHK 199
K QS+D + + T + Q + L G+ EE +V FDRK SP ET P K
Sbjct: 594 KVHQSLDESKMLALIEGATESTIVQSVQKLTAGEDSEEDDDV-FDRKDSPRFLETNPFK 651
>UniRef50_A2DLM0 Cluster: Ser/Thr protein phosphatase, putative;
n=2; Trichomonas vaginalis G3|Rep: Ser/Thr protein
phosphatase, putative - Trichomonas vaginalis G3
Length = 475
Score = 31.9 bits (69), Expect = 9.5
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = -1
Query: 436 WV-ADGAAIMRYQVRNILRSGRHTLDFTQLVLSLLRGDTVDCESALNI 296
WV G RY+ R R+ H + + +LL D VDCE+ LNI
Sbjct: 412 WVRTTGEGQWRYRERIYTRADEHNAFYYCALKALLPDDIVDCENKLNI 459
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 576,662,909
Number of Sequences: 1657284
Number of extensions: 11809719
Number of successful extensions: 34871
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 33715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34858
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 33739557507
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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