Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30044
         (380 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O60391 Cluster: Glutamate [NMDA] receptor subunit 3B pr...    31   7.3  
UniRef50_Q2RKF6 Cluster: Flagellar hook-associated 2-like; n=1; ...    31   9.6  

>UniRef50_O60391 Cluster: Glutamate [NMDA] receptor subunit 3B
           precursor; n=17; Tetrapoda|Rep: Glutamate [NMDA]
           receptor subunit 3B precursor - Homo sapiens (Human)
          Length = 1043

 Score = 31.1 bits (67), Expect = 7.3
 Identities = 14/50 (28%), Positives = 29/50 (58%)
 Frame = -2

Query: 223 LGVENATLTHMG*FHTYTLQLISRVGSGARVNVFAASSGRVSKTVNTRPP 74
           LG+ +A L+ +G  H +    + R+  G+R+  +  +S ++ + +NT PP
Sbjct: 840 LGLGSALLSSLG-EHAFFRLALPRIRKGSRLQYWLHTSQKIHRALNTEPP 888


>UniRef50_Q2RKF6 Cluster: Flagellar hook-associated 2-like; n=1;
           Moorella thermoacetica ATCC 39073|Rep: Flagellar
           hook-associated 2-like - Moorella thermoacetica (strain
           ATCC 39073)
          Length = 632

 Score = 30.7 bits (66), Expect = 9.6
 Identities = 14/27 (51%), Positives = 20/27 (74%)
 Frame = -2

Query: 133 VNVFAASSGRVSKTVNTRPPLNASAVY 53
           +NV AA+ GR++ TVN +  LNA+ VY
Sbjct: 167 INVNAANGGRLALTVNQQERLNANYVY 193


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 301,777,790
Number of Sequences: 1657284
Number of extensions: 5037103
Number of successful extensions: 11229
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 11028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11229
length of database: 575,637,011
effective HSP length: 91
effective length of database: 424,824,167
effective search space used: 14868845845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)