Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10502
         (793 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P40320 Cluster: S-adenosylmethionine synthetase; n=19; ...    48   2e-04
UniRef50_Q00266 Cluster: S-adenosylmethionine synthetase isoform...    41   0.041
UniRef50_Q7QWJ4 Cluster: S-adenosylmethionine synthetase; n=1; G...    39   0.12 
UniRef50_UPI00015BD1C2 Cluster: UPI00015BD1C2 related cluster; n...    35   2.0  
UniRef50_Q5EK82 Cluster: S-adenosyl methionine synthetase 2; n=6...    33   8.2  
UniRef50_Q42242 Cluster: S-adenosyl methionine synthase; n=5; Eu...    33   8.2  

>UniRef50_P40320 Cluster: S-adenosylmethionine synthetase; n=19;
           Eukaryota|Rep: S-adenosylmethionine synthetase -
           Drosophila melanogaster (Fruit fly)
          Length = 408

 Score = 48.4 bits (110), Expect = 2e-04
 Identities = 19/25 (76%), Positives = 21/25 (84%)
 Frame = +3

Query: 3   QRTSTYGHFGRAGFPWESPKPLIVE 77
           QRTSTYGHFGRAGF WE  KPL ++
Sbjct: 383 QRTSTYGHFGRAGFSWEEAKPLEID 407


>UniRef50_Q00266 Cluster: S-adenosylmethionine synthetase isoform
           type-1; n=171; cellular organisms|Rep:
           S-adenosylmethionine synthetase isoform type-1 - Homo
           sapiens (Human)
          Length = 395

 Score = 40.7 bits (91), Expect = 0.041
 Identities = 14/23 (60%), Positives = 19/23 (82%)
 Frame = +3

Query: 3   QRTSTYGHFGRAGFPWESPKPLI 71
           Q+T+ YGHFGR+ FPWE P+ L+
Sbjct: 372 QKTACYGHFGRSEFPWEVPRKLV 394


>UniRef50_Q7QWJ4 Cluster: S-adenosylmethionine synthetase; n=1;
           Giardia lamblia ATCC 50803|Rep: S-adenosylmethionine
           synthetase - Giardia lamblia ATCC 50803
          Length = 436

 Score = 39.1 bits (87), Expect = 0.12
 Identities = 14/23 (60%), Positives = 18/23 (78%)
 Frame = +3

Query: 9   TSTYGHFGRAGFPWESPKPLIVE 77
           TS YGHFGR+ FPWE P+ L ++
Sbjct: 414 TSRYGHFGRSEFPWEQPRRLTLD 436


>UniRef50_UPI00015BD1C2 Cluster: UPI00015BD1C2 related cluster; n=1;
           unknown|Rep: UPI00015BD1C2 UniRef100 entry - unknown
          Length = 372

 Score = 35.1 bits (77), Expect = 2.0
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = +3

Query: 3   QRTSTYGHFGRAGFPWE 53
           +RTS YGHFG+ G PWE
Sbjct: 347 KRTSCYGHFGKEGLPWE 363


>UniRef50_Q5EK82 Cluster: S-adenosyl methionine synthetase 2; n=6;
           Spermatophyta|Rep: S-adenosyl methionine synthetase 2 -
           Pinus taeda (Loblolly pine)
          Length = 115

 Score = 33.1 bits (72), Expect = 8.2
 Identities = 14/24 (58%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
 Frame = +3

Query: 3   QRTSTYGHFGR--AGFPWESPKPL 68
           Q+T+ YGHFGR    F WE+ KPL
Sbjct: 85  QKTAAYGHFGRDDPDFTWETVKPL 108


>UniRef50_Q42242 Cluster: S-adenosyl methionine synthase; n=5;
          Eukaryota|Rep: S-adenosyl methionine synthase -
          Arabidopsis thaliana (Mouse-ear cress)
          Length = 56

 Score = 33.1 bits (72), Expect = 8.2
 Identities = 15/23 (65%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
 Frame = +3

Query: 6  RTSTYGHFGR--AGFPWESPKPL 68
          +TS YGHFGR  A F WE  KPL
Sbjct: 27 KTSAYGHFGRDDADFTWEVVKPL 49


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 734,045,642
Number of Sequences: 1657284
Number of extensions: 13667721
Number of successful extensions: 23318
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 22676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23310
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 67496806780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)