Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10447X
(436 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q5MGK5 Cluster: Ribosomal protein 23; n=2; Endopterygot... 93 3e-18
UniRef50_P36578 Cluster: 60S ribosomal protein L4; n=70; Eukaryo... 83 2e-15
UniRef50_Q00UB0 Cluster: Ribosomal protein RPL1/RPL2/RL4L4; n=1;... 83 3e-15
UniRef50_P09180 Cluster: 60S ribosomal protein L4; n=96; Eukaryo... 79 4e-14
UniRef50_Q0U8Q3 Cluster: Putative uncharacterized protein; n=1; ... 72 5e-12
UniRef50_A7R5H8 Cluster: Chromosome undetermined scaffold_974, w... 68 1e-10
UniRef50_A7E7X3 Cluster: 60S ribosomal protein L4; n=2; Scleroti... 66 2e-10
UniRef50_Q1KYM6 Cluster: RPL4; n=1; Streblomastix strix|Rep: RPL... 65 5e-10
UniRef50_Q7R0P2 Cluster: GLP_79_45017_44067; n=1; Giardia lambli... 64 9e-10
UniRef50_Q4XUM2 Cluster: 60S ribosomal subunit protein L4/L1, pu... 62 7e-09
UniRef50_A3FPV6 Cluster: 60S ribosomal protein-like, putative; n... 62 7e-09
UniRef50_UPI0000499FAF Cluster: 60S ribosomal protein L4; n=5; E... 59 5e-08
UniRef50_O28355 Cluster: 50S ribosomal protein L4P; n=9; Euryarc... 57 2e-07
UniRef50_A2E1Z6 Cluster: Ribosomal protein, putative; n=3; Trich... 56 2e-07
UniRef50_Q95YH2 Cluster: Ribosomal protein L4; n=1; Paramecium c... 56 3e-07
UniRef50_Q4FXU6 Cluster: Ribosomal protein L1a, putative; n=1; L... 56 3e-07
UniRef50_Q3SEA6 Cluster: Ribosomal protein L4, putative; n=2; Ol... 55 7e-07
UniRef50_Q8TY91 Cluster: 50S ribosomal protein L4P; n=13; Euryar... 53 3e-06
UniRef50_UPI00005A2ACC Cluster: PREDICTED: similar to ribosomal ... 52 5e-06
UniRef50_Q8SRC2 Cluster: 60S RIBOSOMAL PROTEIN L4; n=1; Encephal... 50 2e-05
UniRef50_Q98S44 Cluster: 60s ribosomal protein L1; n=2; Cryptomo... 50 3e-05
UniRef50_Q673S8 Cluster: Ribosomal protein L4; n=3; cellular org... 48 7e-05
UniRef50_P60847 Cluster: 50S ribosomal protein L4P; n=1; Nanoarc... 48 9e-05
UniRef50_Q2NFV7 Cluster: 50S ribosomal protein L4P; n=2; Euryarc... 48 9e-05
UniRef50_Q9UXA6 Cluster: 50S ribosomal protein L4P; n=3; Archaea... 46 3e-04
UniRef50_Q9HIR0 Cluster: 50S ribosomal protein L4P; n=4; Thermop... 45 8e-04
UniRef50_Q8ZW51 Cluster: 50S ribosomal protein L4P; n=9; Archaea... 42 0.004
UniRef50_Q4UES5 Cluster: 60S ribosomal subunit protein L4/L1, pu... 42 0.007
UniRef50_A7AUF0 Cluster: Ribosomal protein RPL4A; n=1; Babesia b... 41 0.010
UniRef50_UPI00005A24EF Cluster: PREDICTED: similar to ribosomal ... 40 0.030
UniRef50_Q9YFM1 Cluster: 50S ribosomal protein L4P; n=8; Archaea... 40 0.030
UniRef50_UPI0000F2E6E2 Cluster: PREDICTED: hypothetical protein;... 36 0.37
UniRef50_A1FG00 Cluster: Putative uncharacterized protein; n=1; ... 35 0.65
UniRef50_A1W4P0 Cluster: ABC-type transport system involved in c... 34 1.1
UniRef50_Q2H7T6 Cluster: Putative uncharacterized protein; n=1; ... 33 3.5
UniRef50_A5CR50 Cluster: Putative short chain dehydrogenase/oxid... 32 4.6
UniRef50_Q57U61 Cluster: Putative uncharacterized protein; n=1; ... 32 4.6
UniRef50_UPI000155CE06 Cluster: PREDICTED: similar to MAPA prote... 32 6.0
UniRef50_Q6I535 Cluster: DNA replication and repair protein recF... 32 6.0
UniRef50_A0J096 Cluster: Conserved repeat domain precursor; n=1;... 31 8.0
>UniRef50_Q5MGK5 Cluster: Ribosomal protein 23; n=2;
Endopterygota|Rep: Ribosomal protein 23 - Lonomia
obliqua (Moth)
Length = 274
Score = 92.7 bits (220), Expect = 3e-18
Identities = 42/60 (70%), Positives = 47/60 (78%)
Frame = +1
Query: 256 RLRAGKGKMRNRRRIQRKGPLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLG 435
RLRAGKGKMRNRRR+ RKGPLII+NKDQGLTR+FRNIPGV+ APGGH+G
Sbjct: 53 RLRAGKGKMRNRRRLHRKGPLIIYNKDQGLTRSFRNIPGVDMVNVNKLNLLHLAPGGHVG 112
Score = 62.1 bits (144), Expect = 5e-09
Identities = 27/33 (81%), Positives = 32/33 (96%)
Frame = +2
Query: 158 SGQVQEINKTKQAVIFLRRLKAWSDILKVYKSR 256
S ++QEINKTKQAVIFLRR+KAWSD+LKVYKS+
Sbjct: 20 SDKIQEINKTKQAVIFLRRIKAWSDVLKVYKSQ 52
>UniRef50_P36578 Cluster: 60S ribosomal protein L4; n=70;
Eukaryota|Rep: 60S ribosomal protein L4 - Homo sapiens
(Human)
Length = 427
Score = 83.0 bits (196), Expect = 2e-15
Identities = 36/60 (60%), Positives = 44/60 (73%)
Frame = +1
Query: 256 RLRAGKGKMRNRRRIQRKGPLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLG 435
R+RAGKGKMRNRRRIQR+GP II+N+D G+ +AFRNIPG+ APGGH+G
Sbjct: 188 RMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSKLNILKLAPGGHVG 247
Score = 47.2 bits (107), Expect = 2e-04
Identities = 22/55 (40%), Positives = 26/55 (47%)
Frame = +3
Query: 3 APTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPELPLVVADK 167
APTK WRRWH ++GH IE++PELPLVV DK
Sbjct: 103 APTKTWRRWHRRVNTTQKRYAICSALAASALPALVMSKGHRIEEVPELPLVVEDK 157
Score = 41.1 bits (92), Expect = 0.010
Identities = 17/31 (54%), Positives = 25/31 (80%)
Frame = +2
Query: 164 QVQEINKTKQAVIFLRRLKAWSDILKVYKSR 256
+V+ KTK+AV+ L++LKAW+DI KVY S+
Sbjct: 157 KVEGYKKTKEAVLLLKKLKAWNDIKKVYASQ 187
>UniRef50_Q00UB0 Cluster: Ribosomal protein RPL1/RPL2/RL4L4; n=1;
Ostreococcus tauri|Rep: Ribosomal protein
RPL1/RPL2/RL4L4 - Ostreococcus tauri
Length = 404
Score = 82.6 bits (195), Expect = 3e-15
Identities = 37/65 (56%), Positives = 49/65 (75%), Gaps = 1/65 (1%)
Frame = +1
Query: 244 VQVSR-LRAGKGKMRNRRRIQRKGPLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAP 420
V+ SR +R+GKGKMRNRR +QR+GPL+++++D G+TRAFRNIPGVE AP
Sbjct: 186 VKASRNVRSGKGKMRNRRYVQRRGPLVVYSEDNGVTRAFRNIPGVELCSVDRLGLLTLAP 245
Query: 421 GGHLG 435
GGH+G
Sbjct: 246 GGHVG 250
Score = 35.9 bits (79), Expect = 0.37
Identities = 17/51 (33%), Positives = 21/51 (41%)
Frame = +3
Query: 18 WRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPELPLVVADKS 170
WRRWH ARGH +E +PE+PLVV D +
Sbjct: 111 WRRWHRRVNIKEKRYAVCSAIAASAVPSLLLARGHRVEGVPEVPLVVDDSA 161
>UniRef50_P09180 Cluster: 60S ribosomal protein L4; n=96;
Eukaryota|Rep: 60S ribosomal protein L4 - Drosophila
melanogaster (Fruit fly)
Length = 401
Score = 79.0 bits (186), Expect = 4e-14
Identities = 33/60 (55%), Positives = 44/60 (73%)
Frame = +1
Query: 256 RLRAGKGKMRNRRRIQRKGPLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLG 435
R RAG+G MR+RRRI R+GPL++++KD+GL +AFRNIPG+E APGGH+G
Sbjct: 191 RFRAGRGTMRDRRRIARRGPLVVYDKDEGLRKAFRNIPGIETINVDKLNLLKLAPGGHVG 250
Score = 55.2 bits (127), Expect = 6e-07
Identities = 25/35 (71%), Positives = 30/35 (85%)
Frame = +2
Query: 158 SGQVQEINKTKQAVIFLRRLKAWSDILKVYKSRVF 262
S +VQ++ KTKQAVIFLRRLK W+DI KVYKS+ F
Sbjct: 158 SDEVQKVQKTKQAVIFLRRLKIWADIQKVYKSQRF 192
Score = 39.9 bits (89), Expect = 0.023
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = +3
Query: 3 APTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPELPLVVADKSRR 176
APTK +RRWH Q++GH+I+ + E PLVV+D+ ++
Sbjct: 106 APTKTFRRWHRKVNVNQRRYALVSAIAASGVPALVQSKGHVIDGVSEFPLVVSDEVQK 163
>UniRef50_Q0U8Q3 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 349
Score = 72.1 bits (169), Expect = 5e-12
Identities = 35/63 (55%), Positives = 42/63 (66%), Gaps = 3/63 (4%)
Frame = +1
Query: 256 RLRAGKGKMRNRRRIQRKGPLIIFNKDQG---LTRAFRNIPGVEXXXXXXXXXXXXAPGG 426
+LRAGKGK+R RR QR+GPL+I+N D+ L +AFRNIPGVE APGG
Sbjct: 167 KLRAGKGKLRGRRHKQRRGPLVIYNPDEDGKELVKAFRNIPGVETSSVYSMNLLQLAPGG 226
Query: 427 HLG 435
HLG
Sbjct: 227 HLG 229
Score = 39.5 bits (88), Expect = 0.030
Identities = 17/53 (32%), Positives = 23/53 (43%)
Frame = +3
Query: 3 APTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPELPLVVA 161
APTK WR+WH ARGH + +PE+PLV++
Sbjct: 79 APTKVWRKWHQKINLNQKRFATASALAASGSPALLMARGHNVSTVPEVPLVIS 131
>UniRef50_A7R5H8 Cluster: Chromosome undetermined scaffold_974,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome undetermined scaffold_974, whole genome
shotgun sequence - Vitis vinifera (Grape)
Length = 386
Score = 67.7 bits (158), Expect = 1e-10
Identities = 33/60 (55%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Frame = +1
Query: 259 LRAGKGKMRNRRRIQRKGPLIIFNKDQG-LTRAFRNIPGVEXXXXXXXXXXXXAPGGHLG 435
+ GKGKMRNRR I RKGPLI++ + L +AFRNIPGVE APGGHLG
Sbjct: 52 IHPGKGKMRNRRYISRKGPLIVYGMEGAKLVKAFRNIPGVEVANVDRLNLLKLAPGGHLG 111
Score = 33.5 bits (73), Expect = 2.0
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = +3
Query: 111 ARGHIIEKIPELPLVVADKS 170
ARGH IE +PELPLV+ D +
Sbjct: 2 ARGHRIESVPELPLVIGDSA 21
>UniRef50_A7E7X3 Cluster: 60S ribosomal protein L4; n=2;
Sclerotiniaceae|Rep: 60S ribosomal protein L4 -
Sclerotinia sclerotiorum 1980
Length = 373
Score = 66.5 bits (155), Expect = 2e-10
Identities = 32/63 (50%), Positives = 41/63 (65%), Gaps = 3/63 (4%)
Frame = +1
Query: 256 RLRAGKGKMRNRRRIQRKGPLIIFN---KDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGG 426
+LRAGKGK+R RR QR+GPL++++ + L RAFRN+PGVE APGG
Sbjct: 190 KLRAGKGKLRGRRHRQRRGPLVVYDGATDGKELVRAFRNLPGVETCDVYSLNLLQLAPGG 249
Query: 427 HLG 435
HLG
Sbjct: 250 HLG 252
Score = 35.9 bits (79), Expect = 0.37
Identities = 17/52 (32%), Positives = 22/52 (42%)
Frame = +3
Query: 3 APTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPELPLVV 158
APTK WR+WH ARGH I ++ E+PLV+
Sbjct: 102 APTKVWRKWHQKINLGQKRFATVSALAASGVPALLFARGHQISEVAEVPLVI 153
>UniRef50_Q1KYM6 Cluster: RPL4; n=1; Streblomastix strix|Rep: RPL4 -
Streblomastix strix
Length = 492
Score = 65.3 bits (152), Expect = 5e-10
Identities = 31/60 (51%), Positives = 39/60 (65%)
Frame = +1
Query: 256 RLRAGKGKMRNRRRIQRKGPLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLG 435
R+R G GK RNRR QR+G LI+ ++++GL AFRNI GV+ APGGHLG
Sbjct: 188 RIRVGSGKARNRRYTQRRGVLIVHDQNEGLANAFRNISGVDISNVXRLNIRDLAPGGHLG 247
Score = 41.9 bits (94), Expect = 0.006
Identities = 20/54 (37%), Positives = 24/54 (44%)
Frame = +3
Query: 3 APTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPELPLVVAD 164
+P K WRRWH ARGH I+ +PELPLVV+D
Sbjct: 103 SPLKVWRRWHRMVNVTQRRFAMCSAIAASSNPSLVLARGHKIDNVPELPLVVSD 156
>UniRef50_Q7R0P2 Cluster: GLP_79_45017_44067; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_79_45017_44067 - Giardia lamblia
ATCC 50803
Length = 316
Score = 64.5 bits (150), Expect = 9e-10
Identities = 30/59 (50%), Positives = 38/59 (64%)
Frame = +1
Query: 259 LRAGKGKMRNRRRIQRKGPLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLG 435
+RAG+GKMRNRR I RKGPL+I+N + + R FRN+PGV+ APG H G
Sbjct: 177 IRAGRGKMRNRRYITRKGPLVIYNTED-VARGFRNLPGVDLCHVSSIRLLELAPGSHPG 234
>UniRef50_Q4XUM2 Cluster: 60S ribosomal subunit protein L4/L1,
putative; n=5; Plasmodium|Rep: 60S ribosomal subunit
protein L4/L1, putative - Plasmodium chabaudi
Length = 411
Score = 61.7 bits (143), Expect = 7e-09
Identities = 29/64 (45%), Positives = 39/64 (60%)
Frame = +1
Query: 244 VQVSRLRAGKGKMRNRRRIQRKGPLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPG 423
++ +LRA GKMRNR+ GPLII++ D G+ +AFRNIPGV+ APG
Sbjct: 184 IKSXKLRARXGKMRNRKYKISNGPLIIYSXDSGIKKAFRNIPGVDLCNVTKLNLLKLAPG 243
Query: 424 GHLG 435
G +G
Sbjct: 244 GSIG 247
>UniRef50_A3FPV6 Cluster: 60S ribosomal protein-like, putative; n=4;
Cryptosporidium|Rep: 60S ribosomal protein-like,
putative - Cryptosporidium parvum Iowa II
Length = 394
Score = 61.7 bits (143), Expect = 7e-09
Identities = 27/59 (45%), Positives = 36/59 (61%)
Frame = +1
Query: 259 LRAGKGKMRNRRRIQRKGPLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLG 435
+R GKGKMRNRRR+ GPL+++ +D G+ +A RNI GV+ APGG G
Sbjct: 192 IRCGKGKMRNRRRVCAVGPLVVYAEDNGIVKAMRNIKGVDTCSVERLNLLRLAPGGTFG 250
Score = 33.1 bits (72), Expect = 2.6
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = +3
Query: 3 APTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPELPLVVADK 167
+P K +RR+H ARGH I +PELPLV++++
Sbjct: 104 SPNKTYRRFHRKINTTEKRHAVAAAIAATGCPSLVMARGHRINNVPELPLVISNE 158
>UniRef50_UPI0000499FAF Cluster: 60S ribosomal protein L4; n=5;
Entamoeba histolytica HM-1:IMSS|Rep: 60S ribosomal
protein L4 - Entamoeba histolytica HM-1:IMSS
Length = 431
Score = 58.8 bits (136), Expect = 5e-08
Identities = 28/60 (46%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Frame = +1
Query: 259 LRAGKGKMRNRRRIQRKGPLIIF-NKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLG 435
+RAG+GKMR R+ +RKGPL+++ N D +AFRNIPGV+ APG H+G
Sbjct: 190 VRAGQGKMRGRKIKERKGPLVVYGNDDLQAVKAFRNIPGVDTCRVENLSVLNLAPGCHIG 249
Score = 36.3 bits (80), Expect = 0.28
Identities = 16/33 (48%), Positives = 23/33 (69%)
Frame = +2
Query: 158 SGQVQEINKTKQAVIFLRRLKAWSDILKVYKSR 256
S + I KTKQAV L+++ A+SD+LKV S+
Sbjct: 156 SKSISVIKKTKQAVYLLKKINAYSDVLKVIASK 188
>UniRef50_O28355 Cluster: 50S ribosomal protein L4P; n=9;
Euryarchaeota|Rep: 50S ribosomal protein L4P -
Archaeoglobus fulgidus
Length = 252
Score = 56.8 bits (131), Expect = 2e-07
Identities = 25/60 (41%), Positives = 36/60 (60%)
Frame = +1
Query: 256 RLRAGKGKMRNRRRIQRKGPLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLG 435
R RAG+GKMR RR +++K L++ KD G+ +A +N+PGV+ APG H G
Sbjct: 175 RYRAGRGKMRGRRYVKKKSVLLVVGKDDGVVKAAKNLPGVDAVVVKDLNVELLAPGCHPG 234
>UniRef50_A2E1Z6 Cluster: Ribosomal protein, putative; n=3;
Trichomonas vaginalis G3|Rep: Ribosomal protein,
putative - Trichomonas vaginalis G3
Length = 370
Score = 56.4 bits (130), Expect = 2e-07
Identities = 25/58 (43%), Positives = 34/58 (58%)
Frame = +1
Query: 262 RAGKGKMRNRRRIQRKGPLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLG 435
R+ KGK R +KGPL+I+N+D+G+ +AFRNIPGVE AP +G
Sbjct: 187 RSSKGKFRRAAYKTKKGPLVIYNEDKGIVKAFRNIPGVETISVKALALAKLAPAAQVG 244
>UniRef50_Q95YH2 Cluster: Ribosomal protein L4; n=1; Paramecium
caudatum|Rep: Ribosomal protein L4 - Paramecium caudatum
Length = 252
Score = 56.0 bits (129), Expect = 3e-07
Identities = 28/65 (43%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Frame = +1
Query: 244 VQVSRLRAGKGKMRNRRRIQRKGPLII-FNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAP 420
V +RAG K R ++ RKGPL++ FN++ L +AFRN+PGVE AP
Sbjct: 31 VSTKTIRAGVSKSRGKKYRVRKGPLVVYFNENAKLLKAFRNVPGVEVVNVTRLNLLQLAP 90
Query: 421 GGHLG 435
GG LG
Sbjct: 91 GGQLG 95
>UniRef50_Q4FXU6 Cluster: Ribosomal protein L1a, putative; n=1;
Leishmania major strain Friedlin|Rep: Ribosomal protein
L1a, putative - Leishmania major strain Friedlin
Length = 432
Score = 56.0 bits (129), Expect = 3e-07
Identities = 26/56 (46%), Positives = 37/56 (66%)
Frame = +1
Query: 259 LRAGKGKMRNRRRIQRKGPLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGG 426
+RAG+GKMRNRR + R+GP+++ ++G TRAFRNI G++ APGG
Sbjct: 188 IRAGRGKMRNRRYVARRGPMLVMPNNKG-TRAFRNIFGLDLANVSALTLLHLAPGG 242
Score = 37.1 bits (82), Expect = 0.16
Identities = 19/54 (35%), Positives = 23/54 (42%)
Frame = +3
Query: 3 APTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPELPLVVAD 164
APTK +RRWH +RGH I +PE+PLVV D
Sbjct: 102 APTKIFRRWHRKINLHQKRFAVVSALAASSVPSLVMSRGHQIGNVPEVPLVVED 155
>UniRef50_Q3SEA6 Cluster: Ribosomal protein L4, putative; n=2;
Oligohymenophorea|Rep: Ribosomal protein L4, putative -
Paramecium tetraurelia
Length = 406
Score = 54.8 bits (126), Expect = 7e-07
Identities = 28/65 (43%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Frame = +1
Query: 244 VQVSRLRAGKGKMRNRRRIQRKGPLII-FNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAP 420
V +RAG K R ++ RKGPL++ FN++ L +AFRN+PGVE AP
Sbjct: 185 VSTKVVRAGISKQRGKKYRVRKGPLVVYFNENAKLLKAFRNVPGVEVVNVTRLNLLQLAP 244
Query: 421 GGHLG 435
GG LG
Sbjct: 245 GGQLG 249
Score = 40.3 bits (90), Expect = 0.017
Identities = 19/54 (35%), Positives = 23/54 (42%)
Frame = +3
Query: 6 PTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPELPLVVADK 167
P K WRRWH ARGH I ++P++PLVV DK
Sbjct: 105 PIKVWRRWHRRVNIKQKRHAAATAVAATGIVPLVLARGHRISQVPQIPLVVEDK 158
>UniRef50_Q8TY91 Cluster: 50S ribosomal protein L4P; n=13;
Euryarchaeota|Rep: 50S ribosomal protein L4P -
Methanopyrus kandleri
Length = 260
Score = 52.8 bits (121), Expect = 3e-06
Identities = 25/60 (41%), Positives = 34/60 (56%)
Frame = +1
Query: 256 RLRAGKGKMRNRRRIQRKGPLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLG 435
R+RAGKGK R RR ++ K LI+ ++D+G+ RN PGV+ APG H G
Sbjct: 182 RIRAGKGKRRGRRYVKPKSVLIVVDEDEGIKLGARNHPGVDVVEAMHLGVEHLAPGAHPG 241
>UniRef50_UPI00005A2ACC Cluster: PREDICTED: similar to ribosomal
protein L4; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to ribosomal protein L4 - Canis familiaris
Length = 248
Score = 52.0 bits (119), Expect = 5e-06
Identities = 22/33 (66%), Positives = 28/33 (84%)
Frame = +1
Query: 256 RLRAGKGKMRNRRRIQRKGPLIIFNKDQGLTRA 354
R+RAGKGKMRNRR IQR+G II+N+D G+ +A
Sbjct: 129 RMRAGKGKMRNRRPIQRRGSCIIYNEDNGIIKA 161
Score = 39.1 bits (87), Expect = 0.040
Identities = 16/31 (51%), Positives = 24/31 (77%)
Frame = +2
Query: 164 QVQEINKTKQAVIFLRRLKAWSDILKVYKSR 256
+V+ KTK+ V+ L++LKAW+DI KVY S+
Sbjct: 98 KVEGYKKTKEEVLLLKKLKAWNDIKKVYASQ 128
>UniRef50_Q8SRC2 Cluster: 60S RIBOSOMAL PROTEIN L4; n=1;
Encephalitozoon cuniculi|Rep: 60S RIBOSOMAL PROTEIN L4 -
Encephalitozoon cuniculi
Length = 335
Score = 50.0 bits (114), Expect = 2e-05
Identities = 30/65 (46%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = +1
Query: 244 VQVSR-LRAGKGKMRNRRRIQRKGPLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAP 420
V+ SR +R GKGKMRNRR QRKG LI+ + + FRNI GV+ AP
Sbjct: 180 VEKSRGVRCGKGKMRNRRYTQRKGILIVHGESSEML-GFRNIRGVDQMSIDSLDLLELAP 238
Query: 421 GGHLG 435
GG G
Sbjct: 239 GGVAG 243
>UniRef50_Q98S44 Cluster: 60s ribosomal protein L1; n=2;
Cryptomonadaceae|Rep: 60s ribosomal protein L1 -
Guillardia theta (Cryptomonas phi)
Length = 255
Score = 49.6 bits (113), Expect = 3e-05
Identities = 24/60 (40%), Positives = 35/60 (58%)
Frame = +1
Query: 256 RLRAGKGKMRNRRRIQRKGPLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLG 435
+L++GKGKMRNRR + GPL++F + ++ RNI ++ APGGHLG
Sbjct: 182 KLKSGKGKMRNRRFKKPTGPLLVFKNN---LKSLRNIANIDCMKISALNLTKLAPGGHLG 238
Score = 31.9 bits (69), Expect = 6.0
Identities = 14/53 (26%), Positives = 21/53 (39%)
Frame = +3
Query: 6 PTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPELPLVVAD 164
PT WR+WH +RG+ ++ IPE+P V+ D
Sbjct: 99 PTTIWRKWHHKINKNQRKSAIFSAIASSSIVSIIVSRGYRVKTIPEIPFVIED 151
>UniRef50_Q673S8 Cluster: Ribosomal protein L4; n=3; cellular
organisms|Rep: Ribosomal protein L4 - uncultured marine
group II euryarchaeote DeepAnt-JyKC7
Length = 304
Score = 48.4 bits (110), Expect = 7e-05
Identities = 24/59 (40%), Positives = 32/59 (54%)
Frame = +1
Query: 259 LRAGKGKMRNRRRIQRKGPLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLG 435
+RAGKG MR R+ K L++ ++ GL +A RNIPGV+ APGG G
Sbjct: 232 IRAGKGTMRGRKYRTPKSILLVVSQTNGLAKAARNIPGVDIVVAKDLSAEDLAPGGDAG 290
>UniRef50_P60847 Cluster: 50S ribosomal protein L4P; n=1;
Nanoarchaeum equitans|Rep: 50S ribosomal protein L4P -
Nanoarchaeum equitans
Length = 268
Score = 48.0 bits (109), Expect = 9e-05
Identities = 26/59 (44%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +1
Query: 262 RAGKGKMRNRRRIQRKGPLIIFNK-DQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLG 435
RAGKGK R R I+RKGPLI+ N ++ L +A NIPG++ APG G
Sbjct: 190 RAGKGKRRGRAYIERKGPLIVVNDYNEQLFKAVDNIPGLDIEEVPNLNVELLAPGAKPG 248
>UniRef50_Q2NFV7 Cluster: 50S ribosomal protein L4P; n=2;
Euryarchaeota|Rep: 50S ribosomal protein L4P -
Methanosphaera stadtmanae (strain DSM 3091)
Length = 259
Score = 48.0 bits (109), Expect = 9e-05
Identities = 21/60 (35%), Positives = 33/60 (55%)
Frame = +1
Query: 256 RLRAGKGKMRNRRRIQRKGPLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLG 435
++++GKGK+R R+ KGPL++ D+G++ RN GV+ APG H G
Sbjct: 178 KIKSGKGKLRGRKYRTPKGPLVVVGNDRGISLGARNHAGVDVVEVNNINAELLAPGTHAG 237
>UniRef50_Q9UXA6 Cluster: 50S ribosomal protein L4P; n=3;
Archaea|Rep: 50S ribosomal protein L4P - Sulfolobus
solfataricus
Length = 267
Score = 46.4 bits (105), Expect = 3e-04
Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Frame = +1
Query: 256 RLRAGKGKMRNRRRIQRKGPLII-FNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHL 432
R+RAGKGKMR R+ + GPLII + + + +A RN+ GV+ APG H
Sbjct: 184 RIRAGKGKMRGRKYKEPIGPLIIVHDSNSPIIKAARNLAGVDVVNAKDVSVIHLAPGAHP 243
Query: 433 G 435
G
Sbjct: 244 G 244
>UniRef50_Q9HIR0 Cluster: 50S ribosomal protein L4P; n=4;
Thermoplasmatales|Rep: 50S ribosomal protein L4P -
Thermoplasma acidophilum
Length = 255
Score = 44.8 bits (101), Expect = 8e-04
Identities = 23/56 (41%), Positives = 31/56 (55%)
Frame = +1
Query: 259 LRAGKGKMRNRRRIQRKGPLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGG 426
+RAG+GKMR RR Q K LI+ + +AFR++PGV+ APGG
Sbjct: 180 IRAGRGKMRGRRYKQPKSVLIVARNSSAM-KAFRSLPGVDIASPNSLSIRKLAPGG 234
>UniRef50_Q8ZW51 Cluster: 50S ribosomal protein L4P; n=9;
Archaea|Rep: 50S ribosomal protein L4P - Pyrobaculum
aerophilum
Length = 283
Score = 42.3 bits (95), Expect = 0.004
Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +1
Query: 256 RLRAGKGKMRNRRRIQRKGPLIIFNK-DQGLTRAFRNIPGVEXXXXXXXXXXXXAPGG 426
++RAGKGKMR RR + K L++ + + L A RN PGV+ APGG
Sbjct: 205 KIRAGKGKMRGRRYKEPKSVLVVVSDLNAPLIAAVRNFPGVDVVAVNNLNILVLAPGG 262
Score = 33.9 bits (74), Expect = 1.5
Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = +3
Query: 111 ARGHIIEKIPELPLVV---ADKSRRSTRPNRLSSS*G 212
ARGH++EK+P LP+VV A+K R+ +L + G
Sbjct: 156 ARGHVVEKVPSLPVVVVGDAEKINRAKEAKKLFEALG 192
>UniRef50_Q4UES5 Cluster: 60S ribosomal subunit protein L4/L1,
putative; n=2; Theileria|Rep: 60S ribosomal subunit
protein L4/L1, putative - Theileria annulata
Length = 426
Score = 41.5 bits (93), Expect = 0.007
Identities = 19/61 (31%), Positives = 25/61 (40%)
Frame = +3
Query: 3 APTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPELPLVVADKSRRST 182
APT+ WR WH +RGH +E +PELPLV+ D T
Sbjct: 102 APTRTWRHWHRKINLKEKRLALAVSVAATASVPLVMSRGHRVESVPELPLVLDDTMETLT 161
Query: 183 R 185
+
Sbjct: 162 K 162
Score = 31.9 bits (69), Expect = 6.0
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Frame = +1
Query: 283 RNRRRIQRK--GPLIIFNKD--QGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLG 435
R +R+ +++ GPL++ +G RAFRNIPGV+ AP G LG
Sbjct: 187 RTKRKGKKRPVGPLVVMRSTAVEG-KRAFRNIPGVDVMSVEHMNLLKLAPAGTLG 240
>UniRef50_A7AUF0 Cluster: Ribosomal protein RPL4A; n=1; Babesia
bovis|Rep: Ribosomal protein RPL4A - Babesia bovis
Length = 360
Score = 41.1 bits (92), Expect = 0.010
Identities = 26/67 (38%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Frame = +1
Query: 241 GVQVSRLRAGKGKMRNRRRIQRKGPLIIFNKD--QGLTRAFRNIPGVEXXXXXXXXXXXX 414
G ++ R+ G+ R+ R+ + GPLII +G RAFRNIPGVE
Sbjct: 176 GAELKRIDKVTGRARDGRKKRPVGPLIILRATAVEG-KRAFRNIPGVEVACVERLNLLKL 234
Query: 415 APGGHLG 435
AP G LG
Sbjct: 235 APAGALG 241
Score = 37.5 bits (83), Expect = 0.12
Identities = 18/54 (33%), Positives = 23/54 (42%)
Frame = +3
Query: 3 APTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPELPLVVAD 164
APT+ WRRWH +RGH IE + E+P+VV D
Sbjct: 102 APTRVWRRWHRKVNLKEKRQALASALAATAVVPVVMSRGHRIEALREVPMVVDD 155
>UniRef50_UPI00005A24EF Cluster: PREDICTED: similar to ribosomal
protein L4; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to ribosomal protein L4 - Canis familiaris
Length = 253
Score = 39.5 bits (88), Expect = 0.030
Identities = 16/31 (51%), Positives = 25/31 (80%)
Frame = +2
Query: 164 QVQEINKTKQAVIFLRRLKAWSDILKVYKSR 256
+V+ KT++AV+ L++LKAW+DI KVY S+
Sbjct: 20 KVEGYKKTEEAVLLLKKLKAWNDIKKVYASQ 50
>UniRef50_Q9YFM1 Cluster: 50S ribosomal protein L4P; n=8;
Archaea|Rep: 50S ribosomal protein L4P - Aeropyrum
pernix
Length = 272
Score = 39.5 bits (88), Expect = 0.030
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +1
Query: 256 RLRAGKGKMRNRRRIQRKGPLIIFNKDQG-LTRAFRNIPGVEXXXXXXXXXXXXAPGGHL 432
R AGKGKMR RR K L + + L A + +PGV+ APGGH
Sbjct: 190 RYNAGKGKMRGRRYKVPKSVLFVLEDPRSPLALAVKGMPGVDVVTPTLLSVLHLAPGGHP 249
Query: 433 G 435
G
Sbjct: 250 G 250
>UniRef50_UPI0000F2E6E2 Cluster: PREDICTED: hypothetical protein;
n=1; Monodelphis domestica|Rep: PREDICTED: hypothetical
protein - Monodelphis domestica
Length = 293
Score = 35.9 bits (79), Expect = 0.37
Identities = 19/37 (51%), Positives = 20/37 (54%)
Frame = +2
Query: 2 RPHEALAALAPSRQPPTAESGLGGSGCCYRRPSARSG 112
RP A AA P RQ P E GGSG Y P+ RSG
Sbjct: 122 RPGPAQAARPPPRQWPCTECPGGGSGVVYHLPTERSG 158
>UniRef50_A1FG00 Cluster: Putative uncharacterized protein; n=1;
Pseudomonas putida W619|Rep: Putative uncharacterized
protein - Pseudomonas putida W619
Length = 852
Score = 35.1 bits (77), Expect = 0.65
Identities = 18/48 (37%), Positives = 22/48 (45%)
Frame = +1
Query: 7 PRSPGGVGTVASTSDSGERPWRQRLLLPASQRSFRLEDTLLKRFPSFP 150
P P V +V SD G WRQ L + + FRL LK P+ P
Sbjct: 318 PHWPAFVSSVVKVSDRGPYTWRQALAISDAALKFRLNIGKLKASPALP 365
>UniRef50_A1W4P0 Cluster: ABC-type transport system involved in
cytochrome c biogenesis ATPase component-like protein;
n=1; Acidovorax sp. JS42|Rep: ABC-type transport system
involved in cytochrome c biogenesis ATPase
component-like protein - Acidovorax sp. (strain JS42)
Length = 201
Score = 34.3 bits (75), Expect = 1.1
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +1
Query: 1 SPPRSPGGVGTVASTSDSGERPWRQRLLLP 90
S PR+PG V VA G+ PWR R++LP
Sbjct: 171 SAPRTPGRVLVVAHYDALGDLPWRHRVVLP 200
>UniRef50_Q2H7T6 Cluster: Putative uncharacterized protein; n=1;
Chaetomium globosum|Rep: Putative uncharacterized
protein - Chaetomium globosum (Soil fungus)
Length = 455
Score = 32.7 bits (71), Expect = 3.5
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = -3
Query: 119 SSSLNERWDAGSSNRCRQGRSPLSEVDA 36
+SSL RWD+G +N CR+ P+ E DA
Sbjct: 54 TSSLVIRWDSGDTNHCRKVSLPVVESDA 81
>UniRef50_A5CR50 Cluster: Putative short chain
dehydrogenase/oxidoreductase; n=1; Clavibacter
michiganensis subsp. michiganensis NCPPB 382|Rep:
Putative short chain dehydrogenase/oxidoreductase -
Clavibacter michiganensis subsp. michiganensis (strain
NCPPB 382)
Length = 309
Score = 32.3 bits (70), Expect = 4.6
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = -3
Query: 173 PGLVRYNQGKLGNLFNNVSSSLNERWDAGSSNRCRQGRSPLSEVDATVP 27
P LVRY + K + +++ L+ RW A S+R P VDA P
Sbjct: 168 PALVRYGRSKTACMV--IAAELDRRWRAAGSDRVALAAHPGYSVDALTP 214
>UniRef50_Q57U61 Cluster: Putative uncharacterized protein; n=1;
Trypanosoma brucei|Rep: Putative uncharacterized protein
- Trypanosoma brucei
Length = 504
Score = 32.3 bits (70), Expect = 4.6
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = -2
Query: 399 QLVNIQELHTGDVAEGASQTLILVEDYEGSLTLDTTTV-AHFTLTSTKTRD 250
Q V++Q L T A GA+ T ED +GS + TTV + F+LT ++D
Sbjct: 317 QAVSVQLLSTAKPATGATPTEEEEEDVQGSSSTTATTVLSGFSLTQHSSKD 367
>UniRef50_UPI000155CE06 Cluster: PREDICTED: similar to MAPA protein;
n=1; Ornithorhynchus anatinus|Rep: PREDICTED: similar to
MAPA protein - Ornithorhynchus anatinus
Length = 712
Score = 31.9 bits (69), Expect = 6.0
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = +1
Query: 166 SPGDQQDQTGCHLPEAPQGMV 228
SPGD++D+TG PEAP+G V
Sbjct: 624 SPGDREDRTGDREPEAPRGDV 644
>UniRef50_Q6I535 Cluster: DNA replication and repair protein recF;
n=135; Bacilli|Rep: DNA replication and repair protein
recF - Bacillus anthracis
Length = 375
Score = 31.9 bits (69), Expect = 6.0
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -2
Query: 252 DLYTLRISDHALRRLRKMTACLVLLISWTCPLQPGEAR 139
D++TL++ +H + LRK L LL W P+ G +R
Sbjct: 179 DVFTLQLIEHGTKILRKRFEFLHLLQEWAAPIHRGISR 216
>UniRef50_A0J096 Cluster: Conserved repeat domain precursor; n=1;
Shewanella woodyi ATCC 51908|Rep: Conserved repeat
domain precursor - Shewanella woodyi ATCC 51908
Length = 1109
Score = 31.5 bits (68), Expect = 8.0
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -3
Query: 176 SPGLVRYNQGKLGNLFNNVSSSLNERWDAGSSNRCRQGRSP 54
SP ++ GK G+ +V SSL WD G + R+G P
Sbjct: 734 SPSRLKIKGGKTGSFTVSVDSSLASGWDFGQVDIARRGDGP 774
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 426,457,505
Number of Sequences: 1657284
Number of extensions: 8147247
Number of successful extensions: 26593
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 25479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26561
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 21496989549
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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