Silkworm BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10406
         (813 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A5B9M9 Cluster: Putative uncharacterized protein; n=1; ...    34   3.7  
UniRef50_A2FTR2 Cluster: Putative uncharacterized protein; n=2; ...    34   4.9  
UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    34   4.9  
UniRef50_A7R482 Cluster: Chromosome chr18 scaffold_628, whole ge...    33   6.5  

>UniRef50_A5B9M9 Cluster: Putative uncharacterized protein; n=1;
           Vitis vinifera|Rep: Putative uncharacterized protein -
           Vitis vinifera (Grape)
          Length = 359

 Score = 34.3 bits (75), Expect = 3.7
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = -2

Query: 440 TLILSQQCEANRFCNARNCEFVDLVRQLCA*CEFLNVLDSVKVNSNTRTP 291
           +++L  Q   ++FC  +   F+D V   CA   F+ V+D    N N RTP
Sbjct: 186 SVVLKDQLFVDQFCEKQLYSFIDYVSSGCA-LNFMVVVDFTASNGNPRTP 234


>UniRef50_A2FTR2 Cluster: Putative uncharacterized protein; n=2;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 378

 Score = 33.9 bits (74), Expect = 4.9
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = +3

Query: 327 ENVKKLALSTQLTHEVNELAVSCVT--KTVRFTLLAQY*SELYLNKCICCRIKGRF 488
           ++ + + +S ++T    E  +S +   K  RF L+ QY  +   N+CICC +   F
Sbjct: 10  DDERNIPVSEEITMVQEEEDISTLNQEKLARFALIKQYIEKFVNNQCICCELLSEF 65


>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 33.9 bits (74), Expect = 4.9
 Identities = 12/14 (85%), Positives = 13/14 (92%)
 Frame = +1

Query: 124 WYPPARTHKRSYHQ 165
           WY PARTHKRSYH+
Sbjct: 572 WYLPARTHKRSYHR 585


>UniRef50_A7R482 Cluster: Chromosome chr18 scaffold_628, whole
           genome shotgun sequence; n=2; Vitis vinifera|Rep:
           Chromosome chr18 scaffold_628, whole genome shotgun
           sequence - Vitis vinifera (Grape)
          Length = 1281

 Score = 33.5 bits (73), Expect = 6.5
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = -2

Query: 434 ILSQQCEANRFCNARNCEFVDLVRQLCA*CEFLNVLDSVKVNSNTRTP 291
           +L  Q   ++FC  +   F+D V   CA   F+ V+D    N N RTP
Sbjct: 264 VLKDQLFVDQFCEKQLYSFIDYVSSGCA-LNFMVVVDFTASNGNPRTP 310


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 712,806,500
Number of Sequences: 1657284
Number of extensions: 12880836
Number of successful extensions: 25356
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 24714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25351
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 70377768045
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)