Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30154
         (459 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q1HPQ5 Cluster: Serine proteinase-like protein; n=3; Ob...    53   3e-06
UniRef50_Q011V3 Cluster: Homology to unknown gene; n=2; Ostreoco...    33   2.2  
UniRef50_Q4TVW4 Cluster: Internal virion protein C; n=1; Vibriop...    32   5.2  
UniRef50_Q8LMB1 Cluster: Putative uncharacterized protein OSJNBa...    32   6.8  
UniRef50_A1VH41 Cluster: Putative uncharacterized protein; n=2; ...    31   9.0  
UniRef50_Q01GP0 Cluster: Chromosome 01 contig 1, DNA sequence; n...    31   9.0  
UniRef50_A0DWH2 Cluster: Chromosome undetermined scaffold_67, wh...    31   9.0  

>UniRef50_Q1HPQ5 Cluster: Serine proteinase-like protein; n=3;
           Obtectomera|Rep: Serine proteinase-like protein - Bombyx
           mori (Silk moth)
          Length = 399

 Score = 52.8 bits (121), Expect = 3e-06
 Identities = 34/80 (42%), Positives = 39/80 (48%)
 Frame = +3

Query: 186 MRSXXXXXXXXXXXXQDTTLDPACF*TXXXXXXXXXXXXXGNLEDIIVKPTESNKRVYG* 365
           MRS            QDTTLDPA                 GNLEDIIVKPTESN  V+  
Sbjct: 1   MRSLLLAVLVTVGLAQDTTLDPALLLNIFGTPPTPAKPGTGNLEDIIVKPTESNS-VFTD 59

Query: 366 ETGESLQNAVPYYFV*QRNQ 425
           + GES +  VPYY   + N+
Sbjct: 60  KNGESCK-CVPYYLCNKNNE 78


>UniRef50_Q011V3 Cluster: Homology to unknown gene; n=2;
           Ostreococcus|Rep: Homology to unknown gene -
           Ostreococcus tauri
          Length = 381

 Score = 33.5 bits (73), Expect = 2.2
 Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
 Frame = -3

Query: 322 MSSRFPGAR-LRRRGGRSEDVQKQAGSKVVSWARQTVTSTASKSERIALL--LLKHSEKE 152
           MS  FP  + L    GR        G K + WAR+T+ S A+  E++ +L  LL H +  
Sbjct: 211 MSGTFPYFKDLEGLQGRWVPFNGGLGKKQLEWARETIRSAAASGEKVLILTHLLVHPDST 270

Query: 151 NQQNFTSLYYE 119
            +++  +L ++
Sbjct: 271 AKRSGKTLMWD 281


>UniRef50_Q4TVW4 Cluster: Internal virion protein C; n=1;
           Vibriophage VP4|Rep: Internal virion protein C -
           Vibriophage VP4
          Length = 725

 Score = 32.3 bits (70), Expect = 5.2
 Identities = 17/53 (32%), Positives = 29/53 (54%)
 Frame = -3

Query: 295 LRRRGGRSEDVQKQAGSKVVSWARQTVTSTASKSERIALLLLKHSEKENQQNF 137
           L +R    E +++ A SKV  W  +T  + A  +E + LL+L   EK+ Q ++
Sbjct: 248 LAQRPDGVEALKEMANSKVTLWGEETTYAEAIGTEAMNLLILNAHEKQFQNDW 300


>UniRef50_Q8LMB1 Cluster: Putative uncharacterized protein
           OSJNBa0035F15.12; n=1; Oryza sativa (japonica
           cultivar-group)|Rep: Putative uncharacterized protein
           OSJNBa0035F15.12 - Oryza sativa subsp. japonica (Rice)
          Length = 428

 Score = 31.9 bits (69), Expect = 6.8
 Identities = 19/34 (55%), Positives = 23/34 (67%)
 Frame = -2

Query: 338 RRLNDDVFQVPRCPASPAWGAFRRCSEAGRV*GR 237
           RR  +D  QVPRC  +PA  A RRC+ AGR+ GR
Sbjct: 320 RRDGED--QVPRC--APARRATRRCAPAGRLTGR 349


>UniRef50_A1VH41 Cluster: Putative uncharacterized protein; n=2;
           Desulfovibrio vulgaris subsp. vulgaris DP4|Rep: Putative
           uncharacterized protein - Desulfovibrio vulgaris subsp.
           vulgaris (strain DP4)
          Length = 312

 Score = 31.5 bits (68), Expect = 9.0
 Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -2

Query: 344 ALRRLNDDVFQVPRCPASPAWG-AFRRCSEAGRV*GRVLG 228
           AL  L +D F+VP  P  PAWG A  R    GR     LG
Sbjct: 161 ALATLEEDKFKVPPAPGYPAWGKASPRRGATGRATDVALG 200


>UniRef50_Q01GP0 Cluster: Chromosome 01 contig 1, DNA sequence; n=1;
           Ostreococcus tauri|Rep: Chromosome 01 contig 1, DNA
           sequence - Ostreococcus tauri
          Length = 405

 Score = 31.5 bits (68), Expect = 9.0
 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = -3

Query: 331 LTMMSSRFPGARLRRRGGRSEDVQKQAGSKV--VSWARQTVTSTASKSERIALLLL 170
           LT +      ARLR+RG     +    G  V  VSWA   V+S A KSE +   L+
Sbjct: 202 LTALDGTVTAARLRKRGDFVRALASSTGLMVKDVSWAIGAVSSHAMKSEIVPYALV 257


>UniRef50_A0DWH2 Cluster: Chromosome undetermined scaffold_67, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_67,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 738

 Score = 31.5 bits (68), Expect = 9.0
 Identities = 15/46 (32%), Positives = 27/46 (58%)
 Frame = -2

Query: 437 TPFQLVSLLHKIVGDRILQRFPRFLSVNTLVALRRLNDDVFQVPRC 300
           T F L+S+LH + G  +++    ++  N  +ALR L++DV +   C
Sbjct: 234 TVFLLLSILHTVFGCLVIRNGQFWVPTNDQLALRALHNDVIEDMGC 279


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 433,214,945
Number of Sequences: 1657284
Number of extensions: 7649745
Number of successful extensions: 19606
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 19247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19586
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 24351434270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)